Chy12G208590 (gene) Cucumber (hystrix) v1

Overview
NameChy12G208590
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionUnknown protein
LocationchrH12: 2894631 .. 2894978 (+)
RNA-Seq ExpressionChy12G208590
SyntenyChy12G208590
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGTTGCGTGGAGATGTGATTCGCCAGCCAAGCTGGGACAAAGAAAGTCGTTCGGCCCCCCACCGGATTAAGAATGCGAAGGCTTTTAGAAGGAGAAAGAAGAGTCTCTTCAAGGGGGAGCCCCCTCTAACAATGGAAAGATCTCCGTTCGTGATAAGGAATCCTAGAAAAGATCGATTGAGACTCCCTCCCCGATCCCACGAAGGTCTGTACGTACTTGTCCAGTCCAGGATAAGATCTTTTGGTCTGCAGGTGGGAGCAGCTCAAAGAAAGAAGAGTTTGGTCTTAATTTGGGCGTCTTTAAATCAAGCAGAAATCTTCTTTTCACCTCTGCTACGACCTTAA

mRNA sequence

ATGTCGTTGCGTGGAGATGTGATTCGCCAGCCAAGCTGGGACAAAGAAAGTCGTTCGGCCCCCCACCGGATTAAGAATGCGAAGGCTTTTAGAAGGAGAAAGAAGAGTCTCTTCAAGGGGGAGCCCCCTCTAACAATGGAAAGATCTCCGTTCGTGATAAGGAATCCTAGAAAAGATCGATTGAGACTCCCTCCCCGATCCCACGAAGGTCTGTACGTACTTGTCCAGTCCAGGATAAGATCTTTTGGTCTGCAGGTGGGAGCAGCTCAAAGAAAGAAGAGTTTGGTCTTAATTTGGGCGTCTTTAAATCAAGCAGAAATCTTCTTTTCACCTCTGCTACGACCTTAA

Coding sequence (CDS)

ATGTCGTTGCGTGGAGATGTGATTCGCCAGCCAAGCTGGGACAAAGAAAGTCGTTCGGCCCCCCACCGGATTAAGAATGCGAAGGCTTTTAGAAGGAGAAAGAAGAGTCTCTTCAAGGGGGAGCCCCCTCTAACAATGGAAAGATCTCCGTTCGTGATAAGGAATCCTAGAAAAGATCGATTGAGACTCCCTCCCCGATCCCACGAAGGTCTGTACGTACTTGTCCAGTCCAGGATAAGATCTTTTGGTCTGCAGGTGGGAGCAGCTCAAAGAAAGAAGAGTTTGGTCTTAATTTGGGCGTCTTTAAATCAAGCAGAAATCTTCTTTTCACCTCTGCTACGACCTTAA

Protein sequence

MSLRGDVIRQPSWDKESRSAPHRIKNAKAFRRRKKSLFKGEPPLTMERSPFVIRNPRKDRLRLPPRSHEGLYVLVQSRIRSFGLQVGAAQRKKSLVLIWASLNQAEIFFSPLLRP*
Homology
[Close]
BLAST of Chy12G208590 vs. ExPASy TrEMBL
Match: A0A1R3K614 (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_02786 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.7e-07
Identity = 37/62 (59.68%), Postives = 41/62 (66.13%), Query Frame = 0 

Query: 52  VIRNPRKDRLRLPPRSHEGLYVLVQSRIRSF--GLQVGAAQRKKSLVLI--WASLNQAEI 110
           VIRNPRKDRLRLPPRSHE LYVLVQSR         VGAAQ KK+L+ +  WA      +
Sbjct: 52  VIRNPRKDRLRLPPRSHEDLYVLVQSRTTEIFRSACVGAAQTKKNLLALEPWADRPGLSL 111

[Close]
BLAST of Chy12G208590 vs. NCBI nr
Match: OMP02494.1 (hypothetical protein CCACVL1_02786 [Corchorus capsularis])

HSP 1 Score: 64.3 bits (155), Expect = 4.77e-10
Identity = 37/62 (59.68%), Postives = 41/62 (66.13%), Query Frame = 0 

Query: 52  VIRNPRKDRLRLPPRSHEGLYVLVQSRIRSF--GLQVGAAQRKKSLVLI--WASLNQAEI 109
           VIRNPRKDRLRLPPRSHE LYVLVQSR         VGAAQ KK+L+ +  WA      +
Sbjct: 52  VIRNPRKDRLRLPPRSHEDLYVLVQSRTTEIFRSACVGAAQTKKNLLALEPWADRPGLSL 111

[Close]
BLAST of Chy12G208590 vs. NCBI nr
Match: KAG8369217.1 (hypothetical protein BUALT_Bualt15G0128300 [Buddleja alternifolia])

HSP 1 Score: 58.9 bits (141), Expect = 2.38e-07
Identity = 43/79 (54.43%), Postives = 50/79 (63.29%), Query Frame = 0 

Query: 1  MSLRGDVIRQPSWDKESRSAPHRIKNAKAFR----RRKKSLFKGEPPLTMERSPFVIRNP 60
          MSL G+ I Q   +K  R  P+RI+NAKA      +RKK L      LT+    F+I NP
Sbjct: 29 MSLFGNAICQAGANKTVR--PYRIRNAKASPPKGDQRKKEL------LTL----FLILNP 88

Query: 61 RKDRLRLPPRSHEGLYVLV 75
          RKDRLRLPPRSHE LYVLV
Sbjct: 89 RKDRLRLPPRSHEDLYVLV 95

The following BLAST results are available for this feature:
BLAST of Chy12G208590 vs.
Match NameE-valueIdentityDescription
BLAST of Chy12G208590 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1R3K6141.7e-0759.68Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_02786 PE=4 ... [more]
BLAST of Chy12G208590 vs. NCBI nr
Match NameE-valueIdentityDescription
OMP02494.14.77e-1059.68hypothetical protein CCACVL1_02786 [Corchorus capsularis][more]
KAG8369217.12.38e-0754.43hypothetical protein BUALT_Bualt15G0128300 [Buddleja alternifolia][more]
BLAST of Chy12G208590 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy12G208590.1Chy12G208590.1mRNA