Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGAAACACAGTTAGTGAATTTGGTATGTCAGTTTGGGACCCAACATATCCAAAGAAGGAGACTTGGGTGTCTTTCTTTTCAACATTGAGTTCTGTAAATGTCATATGGAAGGCTCAATGGATGCCTTTGAAGGCAGTAATTTACAGATGTGGAGATTTTCATAGTGTGCCTTTGTTGGGACCATGGGGAGGTGTTAATTATACACCATTGTTAGTTTTGCGTCAGGTGGGGCTCAAACAGTTTATACCACACCAACTCATAATCTACAAGAGTCTGACTTTTCATATGATCTTGAAGACTGTCAAGGAAAAAAACATCGAGCAGTATGTGCATGGAAGTCTGTGAAGAAGATAAAAGACAAAGAACACTATGAAGGGTTACCAGTGGATATGAGGCATGGCAGACAAACAGAAGGAAGAATGTAATATATACCTTAAGGGAGGTAGTTGAAAAGGTAGAAGAGACGAGCTCTGAACAACCAGACCAGTGGGTTGAGTAGACCATTAAATTAGAAGAGAAAAATCGACTCTTAGAGCAAGAGAATGAGAAACTTCAAAAGGAGACGAGCCAATGGATGGATCATGTGACTTTTTTGCAGAAAGAGCTTGAAAAGACCAAGAGTTTCTTAAAAAGTCAAGATAAGTTAGAAAAGAATCTTGAGGTGTTAGATAAAGAGATGAGGCTAATGAATAAAGCGAATAGAAGCTTAAAAAATGAAAAGACAATATTACAGCCAACAGTAGAATCGCAAGATGAATGTATTAAAGATTTAGAAAGCAGGAAGGAATATTCTCTCAAGCTTGTAAATGATTTGAATACATCAATTGGTAAACAGGAAGCACAAATAGTAGATTTGGAAGTACACAATCAGTCTCTACGCCAAACTGTTGATAGCCTACATGTGAAGATGGTCTAGCACTCTGAAGAGTATAAGATACTGAAAATTTTTGCTGATTCCTTACACCATCAATTTACTGCATTTCAAAATTCAAGTGAGAGGATAGTGCAAGAATACGAATTATTGAAGACAGATTAAACGTAAATGAAGGTTGATTATGATTTGCAAAGGAGAGATTTTCAAGCGTTAGTTGAACGTGTAGATCAAACAATTGGATTTCTCAGAATAGTGTCTAAAAGAGCAAATG
mRNA sequence
ATGCGAAACACAGTTAGTGAATTTGGTATGTCAGTTTGGGACCCAACATATCCAAAGAAGGAGACTTGGGTGTCTTTCTTTTCAACATTGAGTTCTGTAAATGTCATATGGAAGGCTCAATGGATGCCTTTGAAGGCAGTAATTTACAGATGTGGAGATTTTCATAGTGTGCCTTTGTTGGGACCATGGGGAGGTGTTAATTATACACCATTGTTAGTTTTGCGTCAGGTGGGGCTCAAACAGTTTATACCACACCAACTCATAATCTACAAGAGTCTGACTTTTCATATGATCTTGAAGACTGTCAAGGAAAAAAACATCGAGCAGTATGTGCATGGAAGTCTGTGAAGAAGATAAAAGACAAAGAACACTATGAAGGGTTACCAGTGGATATGAGGCATGGCAGACAAACAGAAGGAAGAATGTAATATATACCTTAAGGGAGGTAGTTGAAAAGGTAGAAGAGACGAGCTCTGAACAACCAGACCAGTGGGTTGAGTAGACCATTAAATTAGAAGAGAAAAATCGACTCTTAGAGCAAGAGAATGAGAAACTTCAAAAGGAGACGAGCCAATGGATGGATCATGTGACTTTTTTGCAGAAAGAGCTTGAAAAGACCAAGAGTTTCTTAAAAAGTCAAGATAAGTTAGAAAAGAATCTTGAGGTGTTAGATAAAGAGATGAGGCTAATGAATAAAGCGAATAGAAGCTTAAAAAATGAAAAGACAATATTACAGCCAACAGTAGAATCGCAAGATGAATGTATTAAAGATTTAGAAAGCAGGAAGGAATATTCTCTCAAGCTTGTAAATGATTTGAATACATCAATTGGTAAACAGGAAGCACAAATAGTAGATTTGGAAGTACACAATCAGTCTCTACGCCAAACTGTTGATAGCCTACATGTGAAGATGGTCTAGCACTCTGAAGAGTATAAGATACTGAAAATTTTTGCTGATTCCTTACACCATCAATTTACTGCATTTCAAAATTCAAGTGAGAGGATAGTGCAAGAATACGAATTATTGAAGACAGATTAAACGTAAATGAAGGTTGATTATGATTTGCAAAGGAGAGATTTTCAAGCGTTAGTTGAACGTGTAGATCAAACAATTGGATTTCTCAGAATAGTGTCTAAAAGAGCAAATG
Coding sequence (CDS)
ATGCGAAACACAGTTAGTGAATTTGGTATGTCAGTTTGGGACCCAACATATCCAAAGAAGGAGACTTGGGTGTCTTTCTTTTCAACATTGAGTTCTGTAAATGTCATATGGAAGGCTCAATGGATGCCTTTGAAGGCAGTAATTTACAGATGTGGAGATTTTCATAGTGTGCCTTTGTTGGGACCATGGGGAGGTGTTAATTATACACCATTGTTAGTTTTGCGTCAGGTGGGGCTCAAACAGTTTATACCACACCAACTCATAATCTACAAGAGTCTGACTTTTCATATGATCTTGAAGACTGTCAAGGAAAAAAACATCGAGCAGTATGTGCATGGAAGTCTGTGAAGAAGATAAAAGACAAAGAACACTATGAAGGGTTACCAGTGGATATGAGGCATGGCAGACAAACAGAAGGAAGAATGTAATATATACCTTAAGGGAGGTAGTTGAAAAGGTAGAAGAGACGAGCTCTGAACAACCAGACCAGTGGGTTGAGTAGACCATTAAATTAGAAGAGAAAAATCGACTCTTAGAGCAAGAGAATGAGAAACTTCAAAAGGAGACGAGCCAATGGATGGATCATGTGACTTTTTTGCAGAAAGAGCTTGAAAAGACCAAGAGTTTCTTAAAAAGTCAAGATAAGTTAGAAAAGAATCTTGAGGTGTTAGATAAAGAGATGAGGCTAATGAATAAAGCGAATAGAAGCTTAAAAAATGAAAAGACAATATTACAGCCAACAGTAGAATCGCAAGATGAATGTATTAAAGATTTAGAAAGCAGGAAGGAATATTCTCTCAAGCTTGTAAATGATTTGAATACATCAATTGGTAAACAGGAAGCACAAATAGTAGATTTGGAAGTACACAATCAGTCTCTACGCCAAACTGTTGATAGCCTACATGTGAAGATGGTCTAGCACTCTGAAGAGTATAAGATACTGAAAATTTTTGCTGATTCCTTACACCATCAATTTACTGCATTTCAAAATTCAAGTGAGAGGATAGTGCAAGAATACGAATTATTGAAGACAGATTAAACGTAAATGAAGGTTGATTATGATTTGCAAAGGAGAGATTTTCAAGCGTTAGTTGAACGTGTAGATCAAACAATTGGATTTCTCAGAATAGTGTCTAAAAGAGCAAATG
Protein sequence
MRNTVSEFGMSVWDPTYPKKETWVSFFSTLSSVNVIWKAQWMPLKAVIYRCGDFHSVPLLGPWGGVNYTPLLVLRQVGLKQFIPHQLIIYKSLTFHMILKTVKEKNIEQYVHGSL*RR*KTKNTMKGYQWI*GMADKQKEECNIYLKGGS*KGRRDEL*TTRPVG*VDH*IRREKSTLRARE*ETSKGDEPMDGSCDFFAERA*KDQEFLKKSR*VRKES*GVR*RDEANE*SE*KLKK*KDNITANSRIAR*MY*RFRKQEGIFSQACK*FEYINW*TGSTNSRFGSTQSVSTPNC**PTCEDGLAL*RV*DTENFC*FLTPSIYCISKFK*EDSARIRIIEDRLNVNEG*L*FAKERFSSVS*TCRSNNWISQNSV*KSKX
Homology
BLAST of Chy12G207170 vs. ExPASy TrEMBL
Match:
A0A5A7TAR5 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold118G00080 PE=4 SV=1)
HSP 1 Score: 171.0 bits (432), Expect = 9.5e-39
Identity = 79/115 (68.70%), Postives = 93/115 (80.87%), Query Frame = 0
Query: 1 MRNTVSEFGMSVWDPTYPKKETWVSFFSTLSSVNVIWKAQWMPLKAVIYRCGDFHSVPLL 60
MRNT+SEFG++VWDPTYP+KE W+SFF+ L+S NVIWKAQWMPLKAVIYRCGDFHSV LL
Sbjct: 44 MRNTISEFGLAVWDPTYPRKEAWLSFFAKLTSENVIWKAQWMPLKAVIYRCGDFHSVSLL 103
Query: 61 GPWGGVNYTPLLVLRQVGLKQFIPHQLIIYKSLTFHMILKTVKEKNIEQYVHGSL 116
GPW GVNYTPLLVLRQ+ KQFIP + +S F + + KN+EQY HG+L
Sbjct: 104 GPWRGVNYTPLLVLRQMWFKQFIPPTHNLQES-DFSYDPEDCQGKNVEQYAHGNL 157
BLAST of Chy12G207170 vs. ExPASy TrEMBL
Match:
A0A5A7T5S7 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G00170 PE=4 SV=1)
HSP 1 Score: 169.5 bits (428), Expect = 2.8e-38
Identity = 74/84 (88.10%), Postives = 80/84 (95.24%), Query Frame = 0
Query: 1 MRNTVSEFGMSVWDPTYPKKETWVSFFSTLSSVNVIWKAQWMPLKAVIYRCGDFHSVPLL 60
MRNT+SEFGM+VWDPTYP+KE W+SFF+ L+S NVIWKAQWMPLKAVIYRCGDFHSVPLL
Sbjct: 257 MRNTISEFGMAVWDPTYPRKEAWLSFFAKLTSENVIWKAQWMPLKAVIYRCGDFHSVPLL 316
Query: 61 GPWGGVNYTPLLVLRQVGLKQFIP 85
GPWGGVNYTPLLVLRQV LKQFIP
Sbjct: 317 GPWGGVNYTPLLVLRQVWLKQFIP 340
BLAST of Chy12G207170 vs. ExPASy TrEMBL
Match:
A0A5A7T1W2 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G00060 PE=4 SV=1)
HSP 1 Score: 169.5 bits (428), Expect = 2.8e-38
Identity = 74/84 (88.10%), Postives = 80/84 (95.24%), Query Frame = 0
Query: 1 MRNTVSEFGMSVWDPTYPKKETWVSFFSTLSSVNVIWKAQWMPLKAVIYRCGDFHSVPLL 60
MRNT+SEFGM+VWDPTYP+KE W+SFF+ L+S NVIWKAQWMPLKAVIYRCGDFHSVPLL
Sbjct: 236 MRNTISEFGMAVWDPTYPRKEAWLSFFAKLTSENVIWKAQWMPLKAVIYRCGDFHSVPLL 295
Query: 61 GPWGGVNYTPLLVLRQVGLKQFIP 85
GPWGGVNYTPLLVLRQV LKQFIP
Sbjct: 296 GPWGGVNYTPLLVLRQVWLKQFIP 319
BLAST of Chy12G207170 vs. ExPASy TrEMBL
Match:
A0A5A7T494 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold277G002790 PE=4 SV=1)
HSP 1 Score: 167.5 bits (423), Expect = 1.1e-37
Identity = 73/84 (86.90%), Postives = 79/84 (94.05%), Query Frame = 0
Query: 1 MRNTVSEFGMSVWDPTYPKKETWVSFFSTLSSVNVIWKAQWMPLKAVIYRCGDFHSVPLL 60
MRNT+SEFGM+VWDPTYP+KE W+SFF+ L+S N IWKAQWMPLKAVIYRCGDFHSVPLL
Sbjct: 107 MRNTISEFGMAVWDPTYPRKEAWLSFFAKLTSENFIWKAQWMPLKAVIYRCGDFHSVPLL 166
Query: 61 GPWGGVNYTPLLVLRQVGLKQFIP 85
GPWGGVNYTPLLVLRQV LKQFIP
Sbjct: 167 GPWGGVNYTPLLVLRQVWLKQFIP 190
BLAST of Chy12G207170 vs. ExPASy TrEMBL
Match:
A0A5D3BYI1 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold298G00630 PE=4 SV=1)
HSP 1 Score: 167.2 bits (422), Expect = 1.4e-37
Identity = 73/84 (86.90%), Postives = 79/84 (94.05%), Query Frame = 0
Query: 1 MRNTVSEFGMSVWDPTYPKKETWVSFFSTLSSVNVIWKAQWMPLKAVIYRCGDFHSVPLL 60
MRNT+SEF M+VWDPTYP+KE W+SFF+ L+S NVIWKAQWMPLKAVIYRCGDFHSVPLL
Sbjct: 68 MRNTISEFAMAVWDPTYPRKEAWLSFFAKLTSENVIWKAQWMPLKAVIYRCGDFHSVPLL 127
Query: 61 GPWGGVNYTPLLVLRQVGLKQFIP 85
GPWGGVNYTPLLVLRQV LKQFIP
Sbjct: 128 GPWGGVNYTPLLVLRQVWLKQFIP 151
BLAST of Chy12G207170 vs. NCBI nr
Match:
KAA0040173.1 (girdin-like [Cucumis melo var. makuwa])
HSP 1 Score: 171 bits (433), Expect = 3.01e-48
Identity = 79/115 (68.70%), Postives = 93/115 (80.87%), Query Frame = 0
Query: 1 MRNTVSEFGMSVWDPTYPKKETWVSFFSTLSSVNVIWKAQWMPLKAVIYRCGDFHSVPLL 60
MRNT+SEFG++VWDPTYP+KE W+SFF+ L+S NVIWKAQWMPLKAVIYRCGDFHSV LL
Sbjct: 44 MRNTISEFGLAVWDPTYPRKEAWLSFFAKLTSENVIWKAQWMPLKAVIYRCGDFHSVSLL 103
Query: 61 GPWGGVNYTPLLVLRQVGLKQFIPHQLIIYKSLTFHMILKTVKEKNIEQYVHGSL 115
GPW GVNYTPLLVLRQ+ KQFIP + +S F + + KN+EQY HG+L
Sbjct: 104 GPWRGVNYTPLLVLRQMWFKQFIPPTHNLQES-DFSYDPEDCQGKNVEQYAHGNL 157
BLAST of Chy12G207170 vs. NCBI nr
Match:
XP_031739496.1 (uncharacterized protein LOC116403043 [Cucumis sativus])
HSP 1 Score: 174 bits (442), Expect = 2.55e-47
Identity = 78/84 (92.86%), Postives = 82/84 (97.62%), Query Frame = 0
Query: 1 MRNTVSEFGMSVWDPTYPKKETWVSFFSTLSSVNVIWKAQWMPLKAVIYRCGDFHSVPLL 60
MRNT+SEFGM+VW+PTYPKKETWVSFFSTLSS +VIWKAQWMPLKAVIYRCGDFHSVPLL
Sbjct: 107 MRNTISEFGMAVWNPTYPKKETWVSFFSTLSSEDVIWKAQWMPLKAVIYRCGDFHSVPLL 166
Query: 61 GPWGGVNYTPLLVLRQVGLKQFIP 84
GPWGGVNYTPLLVLRQV LKQFIP
Sbjct: 167 GPWGGVNYTPLLVLRQVWLKQFIP 190
BLAST of Chy12G207170 vs. NCBI nr
Match:
XP_031740432.1 (uncharacterized protein LOC116403430 [Cucumis sativus])
HSP 1 Score: 174 bits (442), Expect = 5.12e-47
Identity = 78/84 (92.86%), Postives = 82/84 (97.62%), Query Frame = 0
Query: 1 MRNTVSEFGMSVWDPTYPKKETWVSFFSTLSSVNVIWKAQWMPLKAVIYRCGDFHSVPLL 60
MRNT+SEFGM+VW+PTYPKKETWVSFFSTLSS +VIWKAQWMPLKAVIYRCGDFHSVPLL
Sbjct: 106 MRNTISEFGMAVWNPTYPKKETWVSFFSTLSSEDVIWKAQWMPLKAVIYRCGDFHSVPLL 165
Query: 61 GPWGGVNYTPLLVLRQVGLKQFIP 84
GPWGGVNYTPLLVLRQV LKQFIP
Sbjct: 166 GPWGGVNYTPLLVLRQVWLKQFIP 189
BLAST of Chy12G207170 vs. NCBI nr
Match:
KAA0037618.1 (uncharacterized protein E6C27_scaffold277G002790 [Cucumis melo var. makuwa])
HSP 1 Score: 167 bits (424), Expect = 4.17e-46
Identity = 73/84 (86.90%), Postives = 79/84 (94.05%), Query Frame = 0
Query: 1 MRNTVSEFGMSVWDPTYPKKETWVSFFSTLSSVNVIWKAQWMPLKAVIYRCGDFHSVPLL 60
MRNT+SEFGM+VWDPTYP+KE W+SFF+ L+S N IWKAQWMPLKAVIYRCGDFHSVPLL
Sbjct: 107 MRNTISEFGMAVWDPTYPRKEAWLSFFAKLTSENFIWKAQWMPLKAVIYRCGDFHSVPLL 166
Query: 61 GPWGGVNYTPLLVLRQVGLKQFIP 84
GPWGGVNYTPLLVLRQV LKQFIP
Sbjct: 167 GPWGGVNYTPLLVLRQVWLKQFIP 190
BLAST of Chy12G207170 vs. NCBI nr
Match:
KAA0046902.1 (girdin-like [Cucumis melo var. makuwa] >TYK03246.1 girdin-like [Cucumis melo var. makuwa])
HSP 1 Score: 167 bits (423), Expect = 5.05e-46
Identity = 73/84 (86.90%), Postives = 79/84 (94.05%), Query Frame = 0
Query: 1 MRNTVSEFGMSVWDPTYPKKETWVSFFSTLSSVNVIWKAQWMPLKAVIYRCGDFHSVPLL 60
MRNT+SEF M+VWDPTYP+KE W+SFF+ L+S NVIWKAQWMPLKAVIYRCGDFHSVPLL
Sbjct: 68 MRNTISEFAMAVWDPTYPRKEAWLSFFAKLTSENVIWKAQWMPLKAVIYRCGDFHSVPLL 127
Query: 61 GPWGGVNYTPLLVLRQVGLKQFIP 84
GPWGGVNYTPLLVLRQV LKQFIP
Sbjct: 128 GPWGGVNYTPLLVLRQVWLKQFIP 151
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7TAR5 | 9.5e-39 | 68.70 | Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold118G00080 PE... | [more] |
| A0A5A7T5S7 | 2.8e-38 | 88.10 | Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G00170 PE=... | [more] |
| A0A5A7T1W2 | 2.8e-38 | 88.10 | Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... | [more] |
| A0A5A7T494 | 1.1e-37 | 86.90 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
| A0A5D3BYI1 | 1.4e-37 | 86.90 | Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold298G00630 PE... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KAA0040173.1 | 3.01e-48 | 68.70 | girdin-like [Cucumis melo var. makuwa] | [more] |
| XP_031739496.1 | 2.55e-47 | 92.86 | uncharacterized protein LOC116403043 [Cucumis sativus] | [more] |
| XP_031740432.1 | 5.12e-47 | 92.86 | uncharacterized protein LOC116403430 [Cucumis sativus] | [more] |
| KAA0037618.1 | 4.17e-46 | 86.90 | uncharacterized protein E6C27_scaffold277G002790 [Cucumis melo var. makuwa] | [more] |
| KAA0046902.1 | 5.05e-46 | 86.90 | girdin-like [Cucumis melo var. makuwa] >TYK03246.1 girdin-like [Cucumis melo var... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
