Chy12G206710 (gene) Cucumber (hystrix) v1

Overview


Name	Chy12G206710
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Rho_N domain-containing protein
Location	chrH12: 633282 .. 634506 (+)
RNA-Seq Expression	Chy12G206710
Synteny	Chy12G206710

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGCAGTAGTTTTCCTGCCTCGAATTCTAATCCGTTTTCCCAATTTAATCTCTTTGAGAAGAAGACCCACGTTCGCTTCGAAAGGTATCACAAGCTTGAAACTCCCAAAAACCAGTCTTGAACTTAGCAAATCCATTGTTTACTTAGCCAAATGTTTAAAATGAAAAATTTATTTGAGTTTTGTCAACACTTTTTATTGCAGAATTTGTAGATCTTGTGTACTTCTCACAAGCTGAGGGATTAATTTTTGATGCAGCTTGTTAAATTTGGCAGACGTTGCAGATGTTTTTCCCAGTAAGAACACTCAACCATCTGTTTCGAAAAATAGGCCAGATGGGAATGCCGGGAATCGACCTCCTCGTAGAAACTCTGTGCCAGGAAAAACAAGGAAGAGTGAATCTTCTTCGAGGAAAACAGAAACCCCTCAGAATGAGGAAAACGTAAAAAAATCAGAAACCAATGACCAGGAGGAAGTAATTGCTCTGTTCAGGAAGATTCAGATTTCCATTGCTCAGGAATCGGCAAGCTCCATTGATGAAGAATCCCGCAAGGATGAAAATGGAGCCGCATCTATTCTAGAGACCCTTCGTGAATCAAGAAAGCAGTTGAAAGGTAATTTAATTTCTTTATTGTCACATCTAATGCTTTTGTGGGAAATTTGGTCCACCTTTAATCCATGAATGCATCTCACAAGAACTAAAATTTACAGTTTACAAACATCTCACAAGAAACAAGTGACCACCATTCCCAACCACATACCACATAGACATCAAGCACATTTAGCAGTATCATTGTTGTTACCTTGTGAAACAACATGGCGACACTTCCATGTGAATATACATTGTCACTAGGTATTATTAAAAAAATTCGATCAATTATGTTTACTAAATAATAGAGCTATGGACAGGCAAAACTTCAAAGAAGGCAGGAGCTAAAGTGTTGAGAAGTAAAGGCACGTCTGAAGAGAAGGAAATGCATGATCCTTCACCGCCACCAGCTGCAGATTTCAAGTTGGTTCGACCACCCTCTAAATTTGTGAAGAGATCACCAATCCCTCTTAAAGTTGATGCATCTCAGGCAATAGCTGAAAGCAGAGAATTGAAGTTCCCAAGTATAGAGAATATGAAACTTACCGAGCTGAAAGCACTAGCAAAATCTAGAGGAATTAAGGGTTACTCCAAATTGAAGAAAAATGAGCTCATGGAAATTCTGAGATCCTAA

mRNA sequence

ATGGAAGCAGTAGTTTTCCTGCCTCGAATTCTAATCCGTTTTCCCAATTTAATCTCTTTGAGAAGAAGACCCACGTTCGCTTCGAAAGACGTTGCAGATGTTTTTCCCAGTAAGAACACTCAACCATCTGTTTCGAAAAATAGGCCAGATGGGAATGCCGGGAATCGACCTCCTCGTAGAAACTCTGTGCCAGGAAAAACAAGGAAGAGTGAATCTTCTTCGAGGAAAACAGAAACCCCTCAGAATGAGGAAAACGTAAAAAAATCAGAAACCAATGACCAGGAGGAAGTAATTGCTCTGTTCAGGAAGATTCAGATTTCCATTGCTCAGGAATCGGCAAGCTCCATTGATGAAGAATCCCGCAAGGATGAAAATGGAGCCGCATCTATTCTAGAGACCCTTCGTGAATCAAGAAAGCAGTTGAAAGGCAAAACTTCAAAGAAGGCAGGAGCTAAAGTGTTGAGAAGTAAAGGCACGTCTGAAGAGAAGGAAATGCATGATCCTTCACCGCCACCAGCTGCAGATTTCAAGTTGGTTCGACCACCCTCTAAATTTGTGAAGAGATCACCAATCCCTCTTAAAGTTGATGCATCTCAGGCAATAGCTGAAAGCAGAGAATTGAAGTTCCCAAGTATAGAGAATATGAAACTTACCGAGCTGAAAGCACTAGCAAAATCTAGAGGAATTAAGGGTTACTCCAAATTGAAGAAAAATGAGCTCATGGAAATTCTGAGATCCTAA

Coding sequence (CDS)

ATGGAAGCAGTAGTTTTCCTGCCTCGAATTCTAATCCGTTTTCCCAATTTAATCTCTTTGAGAAGAAGACCCACGTTCGCTTCGAAAGACGTTGCAGATGTTTTTCCCAGTAAGAACACTCAACCATCTGTTTCGAAAAATAGGCCAGATGGGAATGCCGGGAATCGACCTCCTCGTAGAAACTCTGTGCCAGGAAAAACAAGGAAGAGTGAATCTTCTTCGAGGAAAACAGAAACCCCTCAGAATGAGGAAAACGTAAAAAAATCAGAAACCAATGACCAGGAGGAAGTAATTGCTCTGTTCAGGAAGATTCAGATTTCCATTGCTCAGGAATCGGCAAGCTCCATTGATGAAGAATCCCGCAAGGATGAAAATGGAGCCGCATCTATTCTAGAGACCCTTCGTGAATCAAGAAAGCAGTTGAAAGGCAAAACTTCAAAGAAGGCAGGAGCTAAAGTGTTGAGAAGTAAAGGCACGTCTGAAGAGAAGGAAATGCATGATCCTTCACCGCCACCAGCTGCAGATTTCAAGTTGGTTCGACCACCCTCTAAATTTGTGAAGAGATCACCAATCCCTCTTAAAGTTGATGCATCTCAGGCAATAGCTGAAAGCAGAGAATTGAAGTTCCCAAGTATAGAGAATATGAAACTTACCGAGCTGAAAGCACTAGCAAAATCTAGAGGAATTAAGGGTTACTCCAAATTGAAGAAAAATGAGCTCATGGAAATTCTGAGATCCTAA

Protein sequence

MEAVVFLPRILIRFPNLISLRRRPTFASKDVADVFPSKNTQPSVSKNRPDGNAGNRPPRRNSVPGKTRKSESSSRKTETPQNEENVKKSETNDQEEVIALFRKIQISIAQESASSIDEESRKDENGAASILETLRESRKQLKGKTSKKAGAKVLRSKGTSEEKEMHDPSPPPAADFKLVRPPSKFVKRSPIPLKVDASQAIAESRELKFPSIENMKLTELKALAKSRGIKGYSKLKKNELMEILRS*

Homology

[Close]

BLAST of Chy12G206710 vs. ExPASy Swiss-Prot
Match: Q94K75 (Rho-N domain-containing protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RHON1 PE=1 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 2.8e-04
Identity = 24/51 (47.06%), Postives = 34/51 (66.67%), Query Frame = 0


Query: 196 DASQAIAESRELKFPSIENMKLTELKALAKSRGIKGYSKLKKNELMEILRS 247
           DA +   E+ E     +  +KL EL+ +AKSRG+KG SK+KK EL+E+L S
Sbjct: 348 DADEDSDEAEEEAVKDLSELKLVELRGIAKSRGLKGLSKMKKAELVELLGS 398

[Close]

BLAST of Chy12G206710 vs. ExPASy TrEMBL
Match: A0A0A0LX66 (Rho_N domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G470300 PE=4 SV=1)

HSP 1 Score: 417.2 bits (1071), Expect = 4.9e-113
Identity = 232/246 (94.31%), Postives = 239/246 (97.15%), Query Frame = 0


Query: 1   MEAVVFLPRILIRFPNLISLRRRPTFASKDVADVFPSKNTQPSVSKNRPDGNAGNRPPRR 60
           MEAVVFLPRILIRFPNLISLRRRPTFASKDVADV+PSKN QPSVSK+RPDGNAGNRPPRR
Sbjct: 1   MEAVVFLPRILIRFPNLISLRRRPTFASKDVADVYPSKNIQPSVSKSRPDGNAGNRPPRR 60

Query: 61  NSVPGKTRKSESSSRKTETPQNEENVKKSETNDQEEVIALFRKIQISIAQESASSIDEES 120
           NS+PGK RKSESSSRKTETP++EE+VKKSETNDQEEVIALFRKIQ SIA+ESASSIDEES
Sbjct: 61  NSLPGKARKSESSSRKTETPKDEESVKKSETNDQEEVIALFRKIQTSIAKESASSIDEES 120

Query: 121 RKDENGAASILETLRESRKQLKGKTSKKAGAKVLRSKGTSEEKEMHDPSPPPAADFKLVR 180
           RKDEN  ASILETLRESRKQLKGKTSKKAGAKVLRSKG SEEKEMHDPSPPPAADFKLVR
Sbjct: 121 RKDEN--ASILETLRESRKQLKGKTSKKAGAKVLRSKGKSEEKEMHDPSPPPAADFKLVR 180

Query: 181 PPSKFVKRSPIPLKVDASQAIAESRELKFPSIENMKLTELKALAKSRGIKGYSKLKKNEL 240
           PPSKFVKRSPIPLKVDASQAIAESRELKFPS ENMKLTELKALAKSRGIKGYSKLKKNEL
Sbjct: 181 PPSKFVKRSPIPLKVDASQAIAESRELKFPSTENMKLTELKALAKSRGIKGYSKLKKNEL 240

Query: 241 MEILRS 247
           MEILRS
Sbjct: 241 MEILRS 244

[Close]

BLAST of Chy12G206710 vs. ExPASy TrEMBL
Match: A0A5A7UMB7 (SAP-like protein BP-73 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold96G002410 PE=4 SV=1)

HSP 1 Score: 353.6 bits (906), Expect = 6.7e-94
Identity = 199/242 (82.23%), Postives = 214/242 (88.43%), Query Frame = 0


Query: 5   VFLPRILIRFPNLISLRRRPTFASKDVADVFPSKNTQPSVSKNRPDGNAGNRPPRRNSVP 64
           +F  +  +RF +L++L         D+ADV+PSKN Q SVS NRPDGNA NRPPRRNS+P
Sbjct: 41  LFEKKTHVRFESLLNL--------ADIADVYPSKNIQLSVSNNRPDGNARNRPPRRNSLP 100

Query: 65  GKTRKSESSSRKTETPQNEENVKKSETNDQEEVIALFRKIQISIAQESASSIDEESRKDE 124
           GKTRKSESSSRK E P+NEEN+KKS+ NDQEE+IALFRKIQ SIA+ESASSIDEES KDE
Sbjct: 101 GKTRKSESSSRKKEAPKNEENIKKSKPNDQEEIIALFRKIQASIAKESASSIDEESHKDE 160

Query: 125 NGAASILETLRESRKQLKGKTSKKAGAKVLRSKGTSEEKEMHDPSPPPAADFKLVRPPSK 184
           +GA SILETLRE RKQLKGKTSKKAGAKV RSKGTSEEKEMHDPSPPPAADFKLVRPPSK
Sbjct: 161 HGATSILETLREPRKQLKGKTSKKAGAKVFRSKGTSEEKEMHDPSPPPAADFKLVRPPSK 220

Query: 185 FVKRSPIPLKVDASQAIAESRELKFPSIENMKLTELKALAKSRGIKGYSKLKKNELMEIL 244
           FVKRSPIP KVDASQAIAESRELKFPSIENMKL ELKALAKSRGIKGYSKLKKNELMEIL
Sbjct: 221 FVKRSPIPPKVDASQAIAESRELKFPSIENMKLAELKALAKSRGIKGYSKLKKNELMEIL 274

Query: 245 RS 247
           RS
Sbjct: 281 RS 274

[Close]

BLAST of Chy12G206710 vs. ExPASy TrEMBL
Match: A0A1S3BFQ9 (SAP-like protein BP-73 OS=Cucumis melo OX=3656 GN=LOC103489342 PE=4 SV=1)

HSP 1 Score: 353.6 bits (906), Expect = 6.7e-94
Identity = 199/242 (82.23%), Postives = 214/242 (88.43%), Query Frame = 0


Query: 5   VFLPRILIRFPNLISLRRRPTFASKDVADVFPSKNTQPSVSKNRPDGNAGNRPPRRNSVP 64
           +F  +  +RF +L++L         D+ADV+PSKN Q SVS NRPDGNA NRPPRRNS+P
Sbjct: 41  LFEKKTHVRFESLLNL--------ADIADVYPSKNIQLSVSNNRPDGNARNRPPRRNSLP 100

Query: 65  GKTRKSESSSRKTETPQNEENVKKSETNDQEEVIALFRKIQISIAQESASSIDEESRKDE 124
           GKTRKSESSSRK E P+NEEN+KKS+ NDQEE+IALFRKIQ SIA+ESASSIDEES KDE
Sbjct: 101 GKTRKSESSSRKKEAPKNEENIKKSKPNDQEEIIALFRKIQASIAKESASSIDEESHKDE 160

Query: 125 NGAASILETLRESRKQLKGKTSKKAGAKVLRSKGTSEEKEMHDPSPPPAADFKLVRPPSK 184
           +GA SILETLRE RKQLKGKTSKKAGAKV RSKGTSEEKEMHDPSPPPAADFKLVRPPSK
Sbjct: 161 HGATSILETLREPRKQLKGKTSKKAGAKVFRSKGTSEEKEMHDPSPPPAADFKLVRPPSK 220

Query: 185 FVKRSPIPLKVDASQAIAESRELKFPSIENMKLTELKALAKSRGIKGYSKLKKNELMEIL 244
           FVKRSPIP KVDASQAIAESRELKFPSIENMKL ELKALAKSRGIKGYSKLKKNELMEIL
Sbjct: 221 FVKRSPIPPKVDASQAIAESRELKFPSIENMKLAELKALAKSRGIKGYSKLKKNELMEIL 274

Query: 245 RS 247
           RS
Sbjct: 281 RS 274

[Close]

BLAST of Chy12G206710 vs. ExPASy TrEMBL
Match: A0A6J1CGN3 (uncharacterized protein LOC111010657 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111010657 PE=4 SV=1)

HSP 1 Score: 269.2 bits (687), Expect = 1.7e-68
Identity = 166/257 (64.59%), Postives = 199/257 (77.43%), Query Frame = 0


Query: 1   MEAVVFLPRILIRFPNLISLRRRPTFASKDVADVFPSKNTQPSVSKNRPDGNAGNRPPRR 60
           MEAVVF  R L RFPNL+S  RRP FA K++A V  SK  Q SV+ N   GNAG RPPRR
Sbjct: 1   MEAVVFQSRTL-RFPNLVSFGRRPIFALKEIAAVNSSKGIQVSVTSN-GGGNAGQRPPRR 60

Query: 61  NSVPGKTRKSESSSRKTETPQNEENVKKSETNDQEEVIALFRKIQISIAQESASSIDEES 120
           +S PG+TRK+E +  +       E++K  ++N+QEE+IALFRKIQ SIA++SA++ DE+S
Sbjct: 61  SSGPGRTRKNEPNRNEA-----AEDLKNPKSNNQEEIIALFRKIQTSIAKDSATTKDEDS 120

Query: 121 RKDENGAASILETLRESRKQLKGKTSKKAGAKVLRSKGTSEEKEMHDPSPPPAADFKLVR 180
            +DE GA SILE+LRESRKQ+KG+TSKKAG KVLR KG SEE EM+  S  PAA+FKLVR
Sbjct: 121 HEDEIGAESILESLRESRKQVKGRTSKKAGVKVLRRKGISEEPEMYHTS--PAAEFKLVR 180

Query: 181 PPSKFVKRSPIP-----------LKVDASQAIAESRELKFPSIENMKLTELKALAKSRGI 240
           PPSKFVKRSPIP           L+ + SQAIAESRE+KFPS+ENMKLTELKA+AKSRGI
Sbjct: 181 PPSKFVKRSPIPSPPGRNGSRSQLREEPSQAIAESREMKFPSVENMKLTELKAVAKSRGI 240

Query: 241 KGYSKLKKNELMEILRS 247
           KGYSKLKKNEL+E+LRS
Sbjct: 241 KGYSKLKKNELLELLRS 248

[Close]

BLAST of Chy12G206710 vs. ExPASy TrEMBL
Match: A0A6J1K6B8 (uncharacterized protein LOC111490473 OS=Cucurbita maxima OX=3661 GN=LOC111490473 PE=4 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 2.4e-59
Identity = 149/247 (60.32%), Postives = 181/247 (73.28%), Query Frame = 0


Query: 1   MEAVVFLPRILIRFPNLISL-RRRPTFASKDVADVFPSKNTQPSVSKNRPDGNAGNRPPR 60
           MEAVVF  R LIRFPNL+S  RRRP F  K++AD + S + Q +VS N  DGNAG++P R
Sbjct: 1   MEAVVFQSRTLIRFPNLVSFTRRRPIFTLKEIADGYRSNSIQLAVSSNGKDGNAGHQPVR 60

Query: 61  RNSVPGKTRKSESSSRKTETPQNEENVKKSETNDQEEVIALFRKIQISIAQESASSIDEE 120
           R+S PG+TRK+  S RKT+T +NE+ +KK ++N+QEE+IALFRKIQ SIA+E+ASSIDE+
Sbjct: 61  RSSAPGRTRKNVPSLRKTDTHKNED-MKKPKSNNQEEIIALFRKIQTSIAEEAASSIDED 120

Query: 121 SRKDENGAASILETLRESRKQLKGKTSKKAGAKVLRSKGTSEEKEMHDPSPPPAADFKLV 180
           S KDE+G  SILE L ESRKQ+KGKT K AG K LR K TSE           AA+FKLV
Sbjct: 121 SNKDEDGTESILEALTESRKQVKGKTLKNAGVKGLRRKDTSE----------AAAEFKLV 180

Query: 181 RPPSKFVKRSPIPLKVDASQAIAESRELKFPSIENMKLTELKALAKSRGIKGYSKLKKNE 240
           RPPS FVKRSPIP     + +          ++ENMKL ELKA+AKSRGIKGYSKLKKNE
Sbjct: 181 RPPSNFVKRSPIPTPAGGNGS--------HLTVENMKLKELKAVAKSRGIKGYSKLKKNE 228

Query: 241 LMEILRS 247
           L+E+L S
Sbjct: 241 LLELLTS 228

[Close]

BLAST of Chy12G206710 vs. NCBI nr
Match: KGN65614.1 (hypothetical protein Csa_019894 [Cucumis sativus])

HSP 1 Score: 418 bits (1075), Expect = 2.87e-146
Identity = 232/246 (94.31%), Postives = 239/246 (97.15%), Query Frame = 0


Query: 1   MEAVVFLPRILIRFPNLISLRRRPTFASKDVADVFPSKNTQPSVSKNRPDGNAGNRPPRR 60
           MEAVVFLPRILIRFPNLISLRRRPTFASKDVADV+PSKN QPSVSK+RPDGNAGNRPPRR
Sbjct: 1   MEAVVFLPRILIRFPNLISLRRRPTFASKDVADVYPSKNIQPSVSKSRPDGNAGNRPPRR 60

Query: 61  NSVPGKTRKSESSSRKTETPQNEENVKKSETNDQEEVIALFRKIQISIAQESASSIDEES 120
           NS+PGK RKSESSSRKTETP++EE+VKKSETNDQEEVIALFRKIQ SIA+ESASSIDEES
Sbjct: 61  NSLPGKARKSESSSRKTETPKDEESVKKSETNDQEEVIALFRKIQTSIAKESASSIDEES 120

Query: 121 RKDENGAASILETLRESRKQLKGKTSKKAGAKVLRSKGTSEEKEMHDPSPPPAADFKLVR 180
           RKDEN  ASILETLRESRKQLKGKTSKKAGAKVLRSKG SEEKEMHDPSPPPAADFKLVR
Sbjct: 121 RKDEN--ASILETLRESRKQLKGKTSKKAGAKVLRSKGKSEEKEMHDPSPPPAADFKLVR 180

Query: 181 PPSKFVKRSPIPLKVDASQAIAESRELKFPSIENMKLTELKALAKSRGIKGYSKLKKNEL 240
           PPSKFVKRSPIPLKVDASQAIAESRELKFPS ENMKLTELKALAKSRGIKGYSKLKKNEL
Sbjct: 181 PPSKFVKRSPIPLKVDASQAIAESRELKFPSTENMKLTELKALAKSRGIKGYSKLKKNEL 240

Query: 241 MEILRS 246
           MEILRS
Sbjct: 241 MEILRS 244

[Close]

BLAST of Chy12G206710 vs. NCBI nr
Match: XP_011648505.1 (uncharacterized protein LOC105434499, partial [Cucumis sativus])

HSP 1 Score: 366 bits (939), Expect = 3.10e-125
Identity = 207/235 (88.09%), Postives = 218/235 (92.77%), Query Frame = 0


Query: 12  IRFPNLISLRRRPTFASKDVADVFPSKNTQPSVSKNRPDGNAGNRPPRRNSVPGKTRKSE 71
           +RF +L++L         DVADV+PSKN QPSVSK+RPDGNAGNRPPRRNS+PGK RKSE
Sbjct: 41  VRFESLLNLA--------DVADVYPSKNIQPSVSKSRPDGNAGNRPPRRNSLPGKARKSE 100

Query: 72  SSSRKTETPQNEENVKKSETNDQEEVIALFRKIQISIAQESASSIDEESRKDENGAASIL 131
           SSSRKTETP++EE+VKKSETNDQEEVIALFRKIQ SIA+ESASSIDEESRKDEN  ASIL
Sbjct: 101 SSSRKTETPKDEESVKKSETNDQEEVIALFRKIQTSIAKESASSIDEESRKDEN--ASIL 160

Query: 132 ETLRESRKQLKGKTSKKAGAKVLRSKGTSEEKEMHDPSPPPAADFKLVRPPSKFVKRSPI 191
           ETLRESRKQLKGKTSKKAGAKVLRSKG SEEKEMHDPSPPPAADFKLVRPPSKFVKRSPI
Sbjct: 161 ETLRESRKQLKGKTSKKAGAKVLRSKGKSEEKEMHDPSPPPAADFKLVRPPSKFVKRSPI 220

Query: 192 PLKVDASQAIAESRELKFPSIENMKLTELKALAKSRGIKGYSKLKKNELMEILRS 246
           PLKVDASQAIAESRELKFPS ENMKLTELKALAKSRGIKGYSKLKKNELMEILRS
Sbjct: 221 PLKVDASQAIAESRELKFPSTENMKLTELKALAKSRGIKGYSKLKKNELMEILRS 265

[Close]

BLAST of Chy12G206710 vs. NCBI nr
Match: XP_008446702.1 (PREDICTED: SAP-like protein BP-73 [Cucumis melo] >KAA0057053.1 SAP-like protein BP-73 [Cucumis melo var. makuwa])

HSP 1 Score: 355 bits (911), Expect = 7.74e-121
Identity = 198/235 (84.26%), Postives = 211/235 (89.79%), Query Frame = 0


Query: 12  IRFPNLISLRRRPTFASKDVADVFPSKNTQPSVSKNRPDGNAGNRPPRRNSVPGKTRKSE 71
           +RF +L++L         D+ADV+PSKN Q SVS NRPDGNA NRPPRRNS+PGKTRKSE
Sbjct: 48  VRFESLLNLA--------DIADVYPSKNIQLSVSNNRPDGNARNRPPRRNSLPGKTRKSE 107

Query: 72  SSSRKTETPQNEENVKKSETNDQEEVIALFRKIQISIAQESASSIDEESRKDENGAASIL 131
           SSSRK E P+NEEN+KKS+ NDQEE+IALFRKIQ SIA+ESASSIDEES KDE+GA SIL
Sbjct: 108 SSSRKKEAPKNEENIKKSKPNDQEEIIALFRKIQASIAKESASSIDEESHKDEHGATSIL 167

Query: 132 ETLRESRKQLKGKTSKKAGAKVLRSKGTSEEKEMHDPSPPPAADFKLVRPPSKFVKRSPI 191
           ETLRE RKQLKGKTSKKAGAKV RSKGTSEEKEMHDPSPPPAADFKLVRPPSKFVKRSPI
Sbjct: 168 ETLREPRKQLKGKTSKKAGAKVFRSKGTSEEKEMHDPSPPPAADFKLVRPPSKFVKRSPI 227

Query: 192 PLKVDASQAIAESRELKFPSIENMKLTELKALAKSRGIKGYSKLKKNELMEILRS 246
           P KVDASQAIAESRELKFPSIENMKL ELKALAKSRGIKGYSKLKKNELMEILRS
Sbjct: 228 PPKVDASQAIAESRELKFPSIENMKLAELKALAKSRGIKGYSKLKKNELMEILRS 274

[Close]

BLAST of Chy12G206710 vs. NCBI nr
Match: XP_038893912.1 (SAP-like protein BP-73 isoform X3 [Benincasa hispida])

HSP 1 Score: 347 bits (889), Expect = 9.86e-118
Identity = 200/259 (77.22%), Postives = 223/259 (86.10%), Query Frame = 0


Query: 1   MEAVVFLPRILIRFPNLISLRRRPTFASKDVADVFPSKNTQPSVSKNRPDGNAGNRPPRR 60
           MEAV+F PRILIRFP L+SL RRPTFASKD+ADV+PSK  Q SVS NRPDG AGNRPPRR
Sbjct: 1   MEAVIFQPRILIRFPKLVSLGRRPTFASKDIADVYPSKGIQLSVSNNRPDGKAGNRPPRR 60

Query: 61  NSVPGKTRKSESSSRKTETPQNEENVKKSETNDQEEVIALFRKIQISIAQESASSIDEES 120
            S PGKTRK+E SSRKTE   NEE++KKS+ N+QEE+IALFRKI+ SIA+ESASS DEES
Sbjct: 61  ISAPGKTRKNEPSSRKTEAHMNEEDLKKSKYNNQEEIIALFRKIETSIAKESASSNDEES 120

Query: 121 RKDENGAASILETLRESRKQLK----GKTSKKAGAKVLRSKGTSEEKEMHDPSPPPAADF 180
            KDE+GA SILETLRESRKQ+K    GK+SKKAGAK LRS+GTSEEKE+HDPSPP AADF
Sbjct: 121 CKDEHGAESILETLRESRKQVKELWTGKSSKKAGAKALRSEGTSEEKEIHDPSPP-AADF 180

Query: 181 KLVRPPSKFVKRSPIPL---------KVDASQAIAESRELKFPSIENMKLTELKALAKSR 240
           +LVRPPSKFVKRSPIP          +VDA+QAIAESRELKFPSI+NMKLTELKALAKSR
Sbjct: 181 QLVRPPSKFVKRSPIPSPPRGNGSHPRVDATQAIAESRELKFPSIKNMKLTELKALAKSR 240

Query: 241 GIKGYSKLKKNELMEILRS 246
           GIKGYSKLKKNEL+E+L S
Sbjct: 241 GIKGYSKLKKNELIELLGS 258

[Close]

BLAST of Chy12G206710 vs. NCBI nr
Match: XP_038893911.1 (SAP-like protein BP-73 isoform X2 [Benincasa hispida])

HSP 1 Score: 340 bits (872), Expect = 6.85e-115
Identity = 200/276 (72.46%), Postives = 223/276 (80.80%), Query Frame = 0


Query: 1   MEAVVFLPRILIRFPNLISLRRRPTFASK---------------------DVADVFPSKN 60
           MEAV+F PRILIRFP L+SL RRPTFASK                     D+ADV+PSK 
Sbjct: 1   MEAVIFQPRILIRFPKLVSLGRRPTFASKGIEPEIVLNFANPLFNLLNLADIADVYPSKG 60

Query: 61  TQPSVSKNRPDGNAGNRPPRRNSVPGKTRKSESSSRKTETPQNEENVKKSETNDQEEVIA 120
            Q SVS NRPDG AGNRPPRR S PGKTRK+E SSRKTE   NEE++KKS+ N+QEE+IA
Sbjct: 61  IQLSVSNNRPDGKAGNRPPRRISAPGKTRKNEPSSRKTEAHMNEEDLKKSKYNNQEEIIA 120

Query: 121 LFRKIQISIAQESASSIDEESRKDENGAASILETLRESRKQLKGKTSKKAGAKVLRSKGT 180
           LFRKI+ SIA+ESASS DEES KDE+GA SILETLRESRKQ+KGK+SKKAGAK LRS+GT
Sbjct: 121 LFRKIETSIAKESASSNDEESCKDEHGAESILETLRESRKQVKGKSSKKAGAKALRSEGT 180

Query: 181 SEEKEMHDPSPPPAADFKLVRPPSKFVKRSPIPL---------KVDASQAIAESRELKFP 240
           SEEKE+HDPSPP AADF+LVRPPSKFVKRSPIP          +VDA+QAIAESRELKFP
Sbjct: 181 SEEKEIHDPSPP-AADFQLVRPPSKFVKRSPIPSPPRGNGSHPRVDATQAIAESRELKFP 240

Query: 241 SIENMKLTELKALAKSRGIKGYSKLKKNELMEILRS 246
           SI+NMKLTELKALAKSRGIKGYSKLKKNEL+E+L S
Sbjct: 241 SIKNMKLTELKALAKSRGIKGYSKLKKNELIELLGS 275

[Close]

BLAST of Chy12G206710 vs. TAIR 10
Match: AT4G18740.1 (Rho termination factor )

HSP 1 Score: 83.2 bits (204), Expect = 3.2e-16
Identity = 69/199 (34.67%), Postives = 103/199 (51.76%), Query Frame = 0


Query: 65  GKTRKSESSSRKTETPQNEENVKKSETNDQEEVIALFRKIQISIAQESASSIDEESRKDE 124
           G+++K     +K   P +      S++N QEE+I+L ++IQ SI++  +  ++EE   DE
Sbjct: 70  GRSKKGCVCCKK---PSDRRTSNPSKSN-QEEIISLLKRIQSSISKGESRGVEEEKNSDE 129

Query: 125 NG-----AASILETLRESRKQLKGKTSKKAGAKVLRSKGTSEEKEMHDPSPPPAADFKLV 184
           +        +IL+ L +SRK+ +G TS K                      PP    +L 
Sbjct: 130 SSKEKPLTKAILDVLEKSRKKTEGDTSVK--------------------EKPPKRQVELP 189

Query: 185 RPPSKFVKRSPIPLKV------------DASQAIAESRELKFPSIENMKLTELKALAKSR 244
           RPPS FVKR+P+                D +      +E K   IE MKL ELK +AK+R
Sbjct: 190 RPPSSFVKRTPLSSSASGPRGKLPVSNSDKALGKLTKKEEKASLIETMKLAELKEVAKNR 244

Query: 245 GIKGYSKLKKNELMEILRS 247
           GIKGYSKL+K+EL+E++RS
Sbjct: 250 GIKGYSKLRKSELLELIRS 244

[Close]

BLAST of Chy12G206710 vs. TAIR 10
Match: AT4G18740.2 (Rho termination factor )

HSP 1 Score: 71.2 bits (173), Expect = 1.3e-12
Identity = 61/187 (32.62%), Postives = 94/187 (50.27%), Query Frame = 0


Query: 65  GKTRKSESSSRKTETPQNEENVKKSETNDQEEVIALFRKIQISIAQESASSIDEESRKDE 124
           G+++K     +K   P +      S++N QEE+I+L ++IQ SI++  +  ++EE   DE
Sbjct: 70  GRSKKGCVCCKK---PSDRRTSNPSKSN-QEEIISLLKRIQSSISKGESRGVEEEKNSDE 129

Query: 125 NG-----AASILETLRESRKQLKGKTSKKAGAKVLRSKGTSEEKEMHDPSPPPAADFKLV 184
           +        +IL+ L +SRK+ +G TS K                      PP    +L 
Sbjct: 130 SSKEKPLTKAILDVLEKSRKKTEGDTSVK--------------------EKPPKRQVELP 189

Query: 185 RPPSKFVKRSPIPLKVDASQAIAESRELKFPSIENMKLTELKALAKSRGIKGYSKLKKNE 244
           RPPS FVKR+P+       +                   ELK +AK+RGIKGYSKL+K+E
Sbjct: 190 RPPSSFVKRTPLSSSASGPR-------------------ELKEVAKNRGIKGYSKLRKSE 213

Query: 245 LMEILRS 247
           L+E++RS
Sbjct: 250 LLELIRS 213

[Close]

BLAST of Chy12G206710 vs. TAIR 10
Match: AT4G18740.3 (Rho termination factor )

HSP 1 Score: 71.2 bits (173), Expect = 1.3e-12
Identity = 61/187 (32.62%), Postives = 94/187 (50.27%), Query Frame = 0


Query: 65  GKTRKSESSSRKTETPQNEENVKKSETNDQEEVIALFRKIQISIAQESASSIDEESRKDE 124
           G+++K     +K   P +      S++N QEE+I+L ++IQ SI++  +  ++EE   DE
Sbjct: 45  GRSKKGCVCCKK---PSDRRTSNPSKSN-QEEIISLLKRIQSSISKGESRGVEEEKNSDE 104

Query: 125 NG-----AASILETLRESRKQLKGKTSKKAGAKVLRSKGTSEEKEMHDPSPPPAADFKLV 184
           +        +IL+ L +SRK+ +G TS K                      PP    +L 
Sbjct: 105 SSKEKPLTKAILDVLEKSRKKTEGDTSVK--------------------EKPPKRQVELP 164

Query: 185 RPPSKFVKRSPIPLKVDASQAIAESRELKFPSIENMKLTELKALAKSRGIKGYSKLKKNE 244
           RPPS FVKR+P+       +                   ELK +AK+RGIKGYSKL+K+E
Sbjct: 165 RPPSSFVKRTPLSSSASGPR-------------------ELKEVAKNRGIKGYSKLRKSE 188

Query: 245 LMEILRS 247
           L+E++RS
Sbjct: 225 LLELIRS 188

[Close]

BLAST of Chy12G206710 vs. TAIR 10
Match: AT1G06190.1 (Rho termination factor )

HSP 1 Score: 47.4 bits (111), Expect = 2.0e-05
Identity = 24/51 (47.06%), Postives = 34/51 (66.67%), Query Frame = 0


Query: 196 DASQAIAESRELKFPSIENMKLTELKALAKSRGIKGYSKLKKNELMEILRS 247
           DA +   E+ E     +  +KL EL+ +AKSRG+KG SK+KK EL+E+L S
Sbjct: 348 DADEDSDEAEEEAVKDLSELKLVELRGIAKSRGLKGLSKMKKAELVELLGS 398

The following BLAST results are available for this feature:

BLAST of Chy12G206710 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94K75	2.8e-04	47.06	Rho-N domain-containing protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702...	[more]

BLAST of Chy12G206710 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LX66	4.9e-113	94.31	Rho_N domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G470300 PE=4 ...	[more]
A0A5A7UMB7	6.7e-94	82.23	SAP-like protein BP-73 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold9...	[more]
A0A1S3BFQ9	6.7e-94	82.23	SAP-like protein BP-73 OS=Cucumis melo OX=3656 GN=LOC103489342 PE=4 SV=1	[more]
A0A6J1CGN3	1.7e-68	64.59	uncharacterized protein LOC111010657 isoform X2 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1K6B8	2.4e-59	60.32	uncharacterized protein LOC111490473 OS=Cucurbita maxima OX=3661 GN=LOC111490473...	[more]

BLAST of Chy12G206710 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN65614.1	2.87e-146	94.31	hypothetical protein Csa_019894 [Cucumis sativus]	[more]
XP_011648505.1	3.10e-125	88.09	uncharacterized protein LOC105434499, partial [Cucumis sativus]	[more]
XP_008446702.1	7.74e-121	84.26	PREDICTED: SAP-like protein BP-73 [Cucumis melo] >KAA0057053.1 SAP-like protein ...	[more]
XP_038893912.1	9.86e-118	77.22	SAP-like protein BP-73 isoform X3 [Benincasa hispida]	[more]
XP_038893911.1	6.85e-115	72.46	SAP-like protein BP-73 isoform X2 [Benincasa hispida]	[more]

BLAST of Chy12G206710 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G18740.1	3.2e-16	34.67	Rho termination factor	[more]
AT4G18740.2	1.3e-12	32.62	Rho termination factor	[more]
AT4G18740.3	1.3e-12	32.62	Rho termination factor	[more]
AT1G06190.1	2.0e-05	47.06	Rho termination factor	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.10.720.10		coord: 201..246 e-value: 3.6E-7 score: 31.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 137..178
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 34..50
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 64..92
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 154..170
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 32..92
None	No IPR available	PANTHER	PTHR34449:SF2	RHO TERMINATION FACTOR	coord: 1..246
None	No IPR available	PANTHER	PTHR34449	RHO TERMINATION FACTOR	coord: 1..246
IPR011112	Rho termination factor, N-terminal	PFAM	PF07498	Rho_N	coord: 213..244 e-value: 5.5E-9 score: 35.8
IPR036269	Rho termination factor, N-terminal domain superfamily	SUPERFAMILY	68912	Rho N-terminal domain-like	coord: 209..242

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy12G206710.1	Chy12G206710.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006353	DNA-templated transcription, termination