Chy11G193980 (gene) Cucumber (hystrix) v1

Overview
NameChy11G193980
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
Descriptionexosome complex component RRP41-like
LocationchrH11: 11715929 .. 11718730 (-)
RNA-Seq ExpressionChy11G193980
SyntenyChy11G193980
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCAAAAAAGCGACACCAACTACCACAACGTATTCTCCGTCTCCTACTGTCCACAAAACCAGGCCACCCCTCTTCAGAACCGACGACGTCAACTGGGTTCGTCCCGATGGCCGTGGCTTCCATCAATGCCGCCCTGCTTGTATGTCTATCTTGCCCGTTCCTGTTTTTCTCATTTGCTCTGTCTTGCTGCTTTTCACAATATATCGTTAGGTTATTGTTTCATTTAATGTCCATTTGAGGTTATTGTTTCTAATTGCTGCTAGTTCGAGGTTATTGTTCTCGATCAGTTTATCCTAAGTACTAAGCACCCGCGCTTTATTTCTGCTGTCTCAATCTTGTGACCAGGTAATCAAATTTGCCATGTATTTGTATGCTTAAGATGTCTTTTCCATGATGATGGTCCTGTTGAGGATCCCAGGTGGTGATAGATGAGTTACTTCTTCCACTGTCAATTTATTTTGAGATGGAGCCACGTTATCTAATAGGCTTGAGAATCTTAGTTTATCTAATAGCCATGTTATCTTAGTTTATTGATGGAAAAATTGGTTGATGCCATGATTTTAATAAATAAGCGTTGACTGAGAAGTAGAAAATGACATGGTTAAGAATGTTTTGTCTTGACTCTCAACGTTGAAGTCTAACTGGAAGGTTCTTCCTTCGTGGCATGATTCAGTTCAGTTAGTAGTTGATCATGGAGTCCTTGAGGATTTTGAACATATGTTACTTTACTTGGTGGTTTTGACATTTTTTGTTGTTGAATCTTGAAAAAAATATCATCTGTTTAGAAACCAAAGTTGTCATTCCTTTGCAGTTTTCAGGACTGGAGCTGTAAATGCTGCTTCAGGATCTGCTTATGCAGAATTTGGTAATACCAAGGTCATTGTTTCTGTGTAAGTTCTAGCTTACCTCCGACTCCAAGTATGAGCTCTTTGTGACTTCTAGGTTTCTCTTTGAGAGTTTGAGCACCAGTGCCTAATCCAATTGGTCATTTGATGAACTTGCTATTCCTTTCCTTTTATCATTTAAATCATTTCCTACTTTTTTGCAGTTTTTTGTGTCCAGTTTCCTTTCTTTATTCAAATGCTGTATTCTTTGCATCAGATTTGGCCCCAGAGAAAGTAAGAAAGCAATGATGTACAGTGATATTGGCCGGCTCAATTGTAGTGTTAGTTATACAACATTTTCCACTCCAGTTCGTGGACAGGTGTGAAGATACCCCTCTTCTTTTATTTGGTGTATAACTTTTTACTGCCGTCATTTGACTATCTCATTTTGTCTTGACTTCATTTGTTAGGGATCGGAAAACAAGGACTTCTCCTCAATGTTACATAAATCTTTGGAAGGGGCAATAATATTGGAATCATTCCCCAAAACAACAGTGGACGTATTTGCCTTGGTGTTGGAATCTGGAGGCAGTAAGTATAGGATTTTTTTCAATGTGTCTGATCTATAAGACGACTTTACGGTGAAGAAGATAGACTATTATGGTTAATGAATATGAACCAGTATTCAAAGCTTATTTGCATGTGGGAGTACGATGACTCGTAATTTTGAAGTATAACAAACTAAGACCATTTTGAGAAGATTCAAAAGTAACATGTTTTAATCTCATTACACTATGGAAACTTTCAGTTGCCGGTTATTCTTTCTTTAAAACAATGGTCCATTAGCTAAGTGGAGAATGTTGGTTATTTTTTTGGGCTGCATAACTATTTGTTATCAATGGCTTTCATGCCAAGGTATCCATGATGTAATTTCTTTCCGTATTGGCATCAAGTTGGAACCAGATCCAACCATTTTTCTCCTTAGCTCCCTGCATTACCCTCAGATTTTCTACTTTTTATGCAAATTACAGTATGCAACTAAGGTTACCTTTTCTCTAGATTGATATTCTGTTGTTGCAGGTGATCTTCCTGTTGTAATATCATGTGCCAGTCTTGCTCTTGCTGATGCTGGAATTATGCTTTATGATCTTGTTGCCTCAGTTTCTGTGGTATGCATATGCACATTCTCAACTATCATGTTTCTTCTATAACTAATTTTGTATTTCTAGCATTAAACCTATCCTCAACATGCATTTGATTTTGCTAAGTTTATCATGCGTTCTCTTTCCATTCAACTAGCTCTTTGATTACAAAGGGTTATGCAAGTATACAGTTATTCAGGTTGCTGATAATTGAATCCTAAAAGTAGGAGATTGTAGTTCTCTGTGTTCTCTGGCCTATTTTCTCCTCTCTGCAACTGAGGAAGATATTTTTCTGCACAAAATGACCTTTCGCATTGGCTGTCTTGATGGCAGAACTTCATTTAAAAAAAAAAATATTCGGGTTCTGTTTCCAACATAAAGCACCGATGGATCTTTATTCTATCATGATTATGTAACTCTCGTTGTCTACCATACGAACTACTATTTTAAGTTCTAATACATTACTCTCATATGTTAACTAGAGCTGCTTTGGCAAGAATCTTCTTATTGATCCTATATTGGAAGAAGAAAACTACCAAGATGGAAGTCTTATGATAACTTGTATGCCATCTCGTTACGAAGTCACTCAGCTCACAATTACAGGTGAATGGACAACTTCTAAAATTAATGAGGTAAAGCATCAACTCTTAACTTCACATTCATTCTGAAGAAAGTTTTTAGTACTAAAACAGCATCTGATAATGGTTTTTCTTGTTTGTTTGTTTTTATTACCACAAAAGGGTATGCAACTTTGCCTTGATGCTTCATGCAAGCTTGTGGAGATCATGAGATCATGCTTGAAGGAATCTGCCGCCACCATTTCAGAGGAATAA

mRNA sequence

ATGGCCAAAAAAGCGACACCAACTACCACAACGTATTCTCCGTCTCCTACTGTCCACAAAACCAGGCCACCCCTCTTCAGAACCGACGACGTCAACTGGGTTCGTCCCGATGGCCGTGGCTTCCATCAATGCCGCCCTGCTTTTTTCAGGACTGGAGCTGTAAATGCTGCTTCAGGATCTGCTTATGCAGAATTTGGTAATACCAAGGTCATTGTTTCTGTATTTGGCCCCAGAGAAAGTAAGAAAGCAATGATGTACAGTGATATTGGCCGGCTCAATTGTAGTGTTAGTTATACAACATTTTCCACTCCAGTTCGTGGACAGGGATCGGAAAACAAGGACTTCTCCTCAATGTTACATAAATCTTTGGAAGGGGCAATAATATTGGAATCATTCCCCAAAACAACAGTGGACGTATTTGCCTTGGTGTTGGAATCTGGAGGCAGTGATCTTCCTGTTGTAATATCATGTGCCAGTCTTGCTCTTGCTGATGCTGGAATTATGCTTTATGATCTTGTTGCCTCAGTTTCTGTGAGCTGCTTTGGCAAGAATCTTCTTATTGATCCTATATTGGAAGAAGAAAACTACCAAGATGGAAGTCTTATGATAACTTGTATGCCATCTCGTTACGAAGTCACTCAGCTCACAATTACAGGTGAATGGACAACTTCTAAAATTAATGAGGGTATGCAACTTTGCCTTGATGCTTCATGCAAGCTTGTGGAGATCATGAGATCATGCTTGAAGGAATCTGCCGCCACCATTTCAGAGGAATAA

Coding sequence (CDS)

ATGGCCAAAAAAGCGACACCAACTACCACAACGTATTCTCCGTCTCCTACTGTCCACAAAACCAGGCCACCCCTCTTCAGAACCGACGACGTCAACTGGGTTCGTCCCGATGGCCGTGGCTTCCATCAATGCCGCCCTGCTTTTTTCAGGACTGGAGCTGTAAATGCTGCTTCAGGATCTGCTTATGCAGAATTTGGTAATACCAAGGTCATTGTTTCTGTATTTGGCCCCAGAGAAAGTAAGAAAGCAATGATGTACAGTGATATTGGCCGGCTCAATTGTAGTGTTAGTTATACAACATTTTCCACTCCAGTTCGTGGACAGGGATCGGAAAACAAGGACTTCTCCTCAATGTTACATAAATCTTTGGAAGGGGCAATAATATTGGAATCATTCCCCAAAACAACAGTGGACGTATTTGCCTTGGTGTTGGAATCTGGAGGCAGTGATCTTCCTGTTGTAATATCATGTGCCAGTCTTGCTCTTGCTGATGCTGGAATTATGCTTTATGATCTTGTTGCCTCAGTTTCTGTGAGCTGCTTTGGCAAGAATCTTCTTATTGATCCTATATTGGAAGAAGAAAACTACCAAGATGGAAGTCTTATGATAACTTGTATGCCATCTCGTTACGAAGTCACTCAGCTCACAATTACAGGTGAATGGACAACTTCTAAAATTAATGAGGGTATGCAACTTTGCCTTGATGCTTCATGCAAGCTTGTGGAGATCATGAGATCATGCTTGAAGGAATCTGCCGCCACCATTTCAGAGGAATAA

Protein sequence

MAKKATPTTTTYSPSPTVHKTRPPLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKDFSSMLHKSLEGAIILESFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPILEEENYQDGSLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCKLVEIMRSCLKESAATISEE*
Homology
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BLAST of Chy11G193980 vs. ExPASy Swiss-Prot
Match: A2RVK7 (Exosome complex component RRP41-like OS=Arabidopsis thaliana OX=3702 GN=RRP41L PE=2 SV=1)

HSP 1 Score: 380.2 bits (975), Expect = 1.9e-104
Identity = 186/257 (72.37%), Postives = 221/257 (85.99%), Query Frame = 0 

Query: 1   MAKKATPTTTTYSPSPTVHKTRPPLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASGS 60
           MA K    T TYSP   V ++R P+F+  D++W RPDGRGFHQCRPA  +TGAV++ASGS
Sbjct: 1   MAAKPGAATPTYSPK-IVGRSRLPIFKDSDLDWSRPDGRGFHQCRPALLQTGAVSSASGS 60

Query: 61  AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKDFSSMLH 120
           AYAEFGNTKVIVSVFGPRESKKAM+YSD+GRLNC+VSYT F++P  GQG+++K++SSMLH
Sbjct: 61  AYAEFGNTKVIVSVFGPRESKKAMVYSDVGRLNCNVSYTNFASPTLGQGTDHKEYSSMLH 120

Query: 121 KSLEGAIILESFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSC 180
           K+LEG I++E+FPKTTVDVFALVLESGGSDL V+ISCASLALADAGIM+YDL+ +VSVSC
Sbjct: 121 KALEGVIMMETFPKTTVDVFALVLESGGSDLSVLISCASLALADAGIMMYDLITAVSVSC 180

Query: 181 FGKNLLIDPILEEENYQDGSLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCKL 240
            GK+L+IDP+ EEE  +DGS M+TCMPSRYE+TQLTITGEWTT  INE MQLCLDAS KL
Sbjct: 181 IGKSLMIDPVTEEEGCEDGSFMMTCMPSRYEITQLTITGEWTTPNINEAMQLCLDASSKL 240

Query: 241 VEIMRSCLKESAATISE 258
            EIMR CLK+SA+   E
Sbjct: 241 GEIMRDCLKQSASASDE 256

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BLAST of Chy11G193980 vs. ExPASy Swiss-Prot
Match: Q6P0I8 (Exosome complex component MTR3 OS=Danio rerio OX=7955 GN=exosc6 PE=2 SV=2)

HSP 1 Score: 139.0 bits (349), Expect = 7.4e-32
Identity = 85/222 (38.29%), Postives = 122/222 (54.95%), Query Frame = 0 

Query: 39  RGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRES-KKAMMYSDIGRLNCSVS 98
           RG    RP F R G V+ A GSAY E GNTK+I SV+GP+E+ ++       GRL C   
Sbjct: 37  RGNGDVRPVFARCGLVSQAKGSAYIEAGNTKIICSVYGPKETERRDETDMKTGRLVCDFR 96

Query: 99  YTTFSTPVRG---QGSENKDFSSMLHKSLEGAIILESFPKTTVDVFALVLESGGSDLPVV 158
              FS   RG   QGSE +D S+ L +SL   + L  +P++ +DV  +VLE+ GS L   
Sbjct: 97  LAPFSCVKRGAWIQGSEERDLSATLMESLRPGVCLHRYPRSQIDVNVMVLENDGSVLAHA 156

Query: 159 ISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPILEE------ENYQD--GSLMITCM 218
           ++CAS+ALADAGI +YD+V   ++   G   L+DP   E      E Y D  G + +  +
Sbjct: 157 VTCASMALADAGIEMYDIVLGCTLRQSGNACLVDPSYAEECGSWQEGYGDNQGCVTLALL 216

Query: 219 PSRYEVTQLTITGEWTTSKINEGMQLCLDASCKLVEIMRSCL 249
           P+  +V+ L   GE     + E M+ C+D   KL  +++  L
Sbjct: 217 PNLNQVSGLNADGEMREDTLTEAMRTCMDGCHKLYPVVQQAL 258

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BLAST of Chy11G193980 vs. ExPASy Swiss-Prot
Match: Q8U0L9 (Exosome complex component Rrp41 OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) OX=186497 GN=rrp41 PE=3 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.3e-28
Identity = 81/241 (33.61%), Postives = 127/241 (52.70%), Query Frame = 0 

Query: 22  RPPLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRE-S 81
           +P   +  D N  R DGR  ++ RP   + G +  A+GSAY E+G  K+I +V+GPRE  
Sbjct: 4   KPEGLKLIDENGRRLDGRKKYELRPIKMKVGVLKNANGSAYIEWGKNKIIAAVYGPREIH 63

Query: 82  KKAMMYSDIGRLNCSVSYTTFSTPVR---GQGSENKDFSSMLHKSLEGAIILESFPKTTV 141
            K +   D   L    +   FS   R   G    + + S ++  +LE A+ILE FP+T +
Sbjct: 64  PKHLQRPDRAILRVRYNMAPFSVEERKKPGPDRRSIEISKVIRGALEPALILEMFPRTAI 123

Query: 142 DVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPILEEENYQ 201
           DVF  VL++        I+ ASLALADAGI + DLVA+ S       +++D   EE+NY 
Sbjct: 124 DVFIEVLQADAGTRVAGITAASLALADAGIPMRDLVAACSAGKIEGEIVLDLNKEEDNYG 183

Query: 202 DGSLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCKLVEIMRSCLKESAATISE 259
           +  + +  MP + ++T L + G  T  +  E ++L +  +  + +  R  LKE    I++
Sbjct: 184 EADVPVAIMPIKNDITLLQMDGYLTKEEFIEAVKLAIKGAKAVYQKQREALKEKYLKIAQ 243

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BLAST of Chy11G193980 vs. ExPASy Swiss-Prot
Match: O59223 (Exosome complex component Rrp41 OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) OX=70601 GN=rrp41 PE=3 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 2.2e-28
Identity = 80/241 (33.20%), Postives = 128/241 (53.11%), Query Frame = 0 

Query: 22  RPPLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRE-S 81
           +P   +  D N  R DGR  ++ RP   + G +  A+GSAY E+G  K+I +V+GPRE  
Sbjct: 4   KPEGLKLIDENGRRIDGRKKYELRPIKMKVGVLKNANGSAYIEWGRNKIIAAVYGPRELH 63

Query: 82  KKAMMYSDIGRLNCSVSYTTFSTPVR---GQGSENKDFSSMLHKSLEGAIILESFPKTTV 141
            K +   D   L    +   FS   R   G    + + S ++  +LE A+ILE FP+T++
Sbjct: 64  SKHLQRPDRAILRVRYNMAPFSVEERKKPGPDRRSIEISKVIKGALEPALILEMFPRTSI 123

Query: 142 DVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPILEEENYQ 201
           DVF  VL++        I+ ASLALADAGI + DLVA+ +       +++D   EE+NY 
Sbjct: 124 DVFIEVLQADAGTRVAGITAASLALADAGIPMRDLVAACAAGKIEGEIVLDLNKEEDNYG 183

Query: 202 DGSLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCKLVEIMRSCLKESAATISE 259
           +  + +  MP + ++T L + G  T  +  E ++L +  +  + +  R  LKE    I++
Sbjct: 184 EADVPVAIMPLKNDITLLQMDGYLTKEEFIEAVRLAIKGAKAVYQKQREALKEKYLKIAQ 243

[Close]
BLAST of Chy11G193980 vs. ExPASy Swiss-Prot
Match: B6YSI2 (Exosome complex component Rrp41 OS=Thermococcus onnurineus (strain NA1) OX=523850 GN=rrp41 PE=3 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 3.8e-28
Identity = 79/241 (32.78%), Postives = 125/241 (51.87%), Query Frame = 0 

Query: 22  RPPLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRE-S 81
           +P   +  D N  R DGR  ++ RP     G +  A GSAY E+G  K++ +V+GPRE  
Sbjct: 4   KPEDLKLIDENGRRIDGRKKYELRPIKMEVGVLKNADGSAYVEWGKNKILAAVYGPREIH 63

Query: 82  KKAMMYSDIGRLNCSVSYTTFSTPVR---GQGSENKDFSSMLHKSLEGAIILESFPKTTV 141
            K +   D   L    +   FS   R   G    + + S ++  +LE A+ILE FP+T +
Sbjct: 64  PKHLQRPDRAILRVRYNMAPFSVEERKKPGPDRRSVEISKVIRGALEPALILEMFPRTAI 123

Query: 142 DVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPILEEENYQ 201
           D+F  VL++        I+ ASLALADAGI + DLVA+ +       +++D   EE+NY 
Sbjct: 124 DIFIEVLQADAGTRVAGITAASLALADAGIPMRDLVAACAAGKIEGEIVLDLNKEEDNYG 183

Query: 202 DGSLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCKLVEIMRSCLKESAATISE 259
           +  + +  MP + ++T L + G  T  +  E ++L +  +  + +  R  LKE    I+E
Sbjct: 184 EADVPVAIMPLKNDITLLQMDGYLTRDEFIEAVRLAIKGAKAVYQKQREALKEKYLKIAE 243

[Close]
BLAST of Chy11G193980 vs. ExPASy TrEMBL
Match: A0A1S3CKF3 (exosome complex component RRP41-like OS=Cucumis melo OX=3656 GN=LOC103501959 PE=4 SV=1)

HSP 1 Score: 503.8 bits (1296), Expect = 4.2e-139
Identity = 256/259 (98.84%), Postives = 258/259 (99.61%), Query Frame = 0 

Query: 1   MAKKATP-TTTTYSPSPTVHKTRPPLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASG 60
           MAKKATP TTTTYSPSPTVHKTRPPLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASG
Sbjct: 1   MAKKATPTTTTTYSPSPTVHKTRPPLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASG 60

Query: 61  SAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKDFSSML 120
           SAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENK+FSSML
Sbjct: 61  SAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKEFSSML 120

Query: 121 HKSLEGAIILESFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVS 180
           HKSLEGAIILE+FPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVS
Sbjct: 121 HKSLEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVS 180

Query: 181 CFGKNLLIDPILEEENYQDGSLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCK 240
           CFGKNLLIDPILEEENYQDGSLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCK
Sbjct: 181 CFGKNLLIDPILEEENYQDGSLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCK 240

Query: 241 LVEIMRSCLKESAATISEE 259
           LVEIMRSCLKESAATISEE
Sbjct: 241 LVEIMRSCLKESAATISEE 259

[Close]
BLAST of Chy11G193980 vs. ExPASy TrEMBL
Match: A0A0A0KEK6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G146430 PE=4 SV=1)

HSP 1 Score: 503.1 bits (1294), Expect = 7.2e-139
Identity = 254/258 (98.45%), Postives = 255/258 (98.84%), Query Frame = 0 

Query: 1   MAKKATPTTTTYSPSPTVHKTRPPLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASGS 60
           MAKKATPTTTTYSPSPTVHKTRP LFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASGS
Sbjct: 1   MAKKATPTTTTYSPSPTVHKTRPSLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASGS 60

Query: 61  AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKDFSSMLH 120
           AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKDFSSMLH
Sbjct: 61  AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKDFSSMLH 120

Query: 121 KSLEGAIILESFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSC 180
           KSLEGAIILESFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSC
Sbjct: 121 KSLEGAIILESFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSC 180

Query: 181 FGKNLLIDPILEEENYQDGSLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCKL 240
           FGKNLLID +LEEENYQDGSLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCKL
Sbjct: 181 FGKNLLIDTVLEEENYQDGSLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCKL 240

Query: 241 VEIMRSCLKESAATISEE 259
           VEIMRSCLKESA TISEE
Sbjct: 241 VEIMRSCLKESAVTISEE 258

[Close]
BLAST of Chy11G193980 vs. ExPASy TrEMBL
Match: A0A6J1JDA9 (exosome complex component RRP41-like OS=Cucurbita maxima OX=3661 GN=LOC111483981 PE=4 SV=1)

HSP 1 Score: 488.4 bits (1256), Expect = 1.8e-134
Identity = 243/258 (94.19%), Postives = 253/258 (98.06%), Query Frame = 0 

Query: 1   MAKKATPTTTTYSPSPTVHKTRPPLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASGS 60
           MAKKATP T+TYSPSPT HKTRPP+FR+DDV+WVRPDGR FHQCRPAFFRTGAVNAASGS
Sbjct: 1   MAKKATPATSTYSPSPTTHKTRPPIFRSDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGS 60

Query: 61  AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKDFSSMLH 120
           AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENK+FSSMLH
Sbjct: 61  AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKEFSSMLH 120

Query: 121 KSLEGAIILESFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSC 180
           K+LEGAIILE+FPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSC
Sbjct: 121 KALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSC 180

Query: 181 FGKNLLIDPILEEENYQDGSLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCKL 240
           FGKNLLIDP LEEENYQDGSLMITCMPSRYEVTQLTITGEW+T+KINEGMQLCLDASCKL
Sbjct: 181 FGKNLLIDPALEEENYQDGSLMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKL 240

Query: 241 VEIMRSCLKESAATISEE 259
           V IMRSCLKESAAT+SEE
Sbjct: 241 VTIMRSCLKESAATVSEE 258

[Close]
BLAST of Chy11G193980 vs. ExPASy TrEMBL
Match: A0A6J1FYV1 (exosome complex component RRP41-like OS=Cucurbita moschata OX=3662 GN=LOC111449089 PE=4 SV=1)

HSP 1 Score: 488.4 bits (1256), Expect = 1.8e-134
Identity = 243/258 (94.19%), Postives = 252/258 (97.67%), Query Frame = 0 

Query: 1   MAKKATPTTTTYSPSPTVHKTRPPLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASGS 60
           MAKKATP TTTYSPSPT HKTRPP+FR+DDV+WVRPDGR FHQCRPAFFRTGAVNAASGS
Sbjct: 1   MAKKATPATTTYSPSPTTHKTRPPIFRSDDVDWVRPDGRSFHQCRPAFFRTGAVNAASGS 60

Query: 61  AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKDFSSMLH 120
           AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENK+FSSMLH
Sbjct: 61  AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKEFSSMLH 120

Query: 121 KSLEGAIILESFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSC 180
           K+LEGAII E+FPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSC
Sbjct: 121 KALEGAIIFETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSC 180

Query: 181 FGKNLLIDPILEEENYQDGSLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCKL 240
           FGKNLLIDP LEEENYQDGSLMITCMPSRYEVTQLTITGEW+T+KINEGMQLCLDASCKL
Sbjct: 181 FGKNLLIDPALEEENYQDGSLMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKL 240

Query: 241 VEIMRSCLKESAATISEE 259
           V IMRSCLKESAAT+SEE
Sbjct: 241 VTIMRSCLKESAATVSEE 258

[Close]
BLAST of Chy11G193980 vs. ExPASy TrEMBL
Match: A0A6J1CHT0 (exosome complex component RRP41-like OS=Momordica charantia OX=3673 GN=LOC111011303 PE=4 SV=1)

HSP 1 Score: 482.3 bits (1240), Expect = 1.3e-132
Identity = 239/258 (92.64%), Postives = 255/258 (98.84%), Query Frame = 0 

Query: 1   MAKKATPTTTTYSPSPTVHKTRPPLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASGS 60
           MAKKATP TTTYSPSPT+HKTRPP+FR+D+ +WVRPDGRGFHQCRPAFFRTGAVNAASGS
Sbjct: 1   MAKKATPATTTYSPSPTIHKTRPPIFRSDEADWVRPDGRGFHQCRPAFFRTGAVNAASGS 60

Query: 61  AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKDFSSMLH 120
           AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTF+TPVRGQGSENK+FSSMLH
Sbjct: 61  AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFATPVRGQGSENKEFSSMLH 120

Query: 121 KSLEGAIILESFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSC 180
           K+LEGAIILE+FPKTTVD+FALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSC
Sbjct: 121 KALEGAIILETFPKTTVDIFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSC 180

Query: 181 FGKNLLIDPILEEENYQDGSLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCKL 240
           FGKNLLIDP+LEEENYQDGSLMITCMPSRYEVTQLTITGEW+T+KINEGMQLCLDASCKL
Sbjct: 181 FGKNLLIDPMLEEENYQDGSLMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKL 240

Query: 241 VEIMRSCLKESAATISEE 259
           V+IMRSCLKES ATIS++
Sbjct: 241 VKIMRSCLKES-ATISQD 257

[Close]
BLAST of Chy11G193980 vs. NCBI nr
Match: XP_008463959.1 (PREDICTED: exosome complex component RRP41-like [Cucumis melo])

HSP 1 Score: 501 bits (1290), Expect = 1.37e-178
Identity = 256/259 (98.84%), Postives = 258/259 (99.61%), Query Frame = 0 

Query: 1   MAKKATPTTTT-YSPSPTVHKTRPPLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASG 60
           MAKKATPTTTT YSPSPTVHKTRPPLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASG
Sbjct: 1   MAKKATPTTTTTYSPSPTVHKTRPPLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASG 60

Query: 61  SAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKDFSSML 120
           SAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENK+FSSML
Sbjct: 61  SAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKEFSSML 120

Query: 121 HKSLEGAIILESFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVS 180
           HKSLEGAIILE+FPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVS
Sbjct: 121 HKSLEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVS 180

Query: 181 CFGKNLLIDPILEEENYQDGSLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCK 240
           CFGKNLLIDPILEEENYQDGSLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCK
Sbjct: 181 CFGKNLLIDPILEEENYQDGSLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCK 240

Query: 241 LVEIMRSCLKESAATISEE 258
           LVEIMRSCLKESAATISEE
Sbjct: 241 LVEIMRSCLKESAATISEE 259

[Close]
BLAST of Chy11G193980 vs. NCBI nr
Match: XP_004145749.1 (exosome complex component RRP41-like [Cucumis sativus] >KGN46847.1 hypothetical protein Csa_020883 [Cucumis sativus])

HSP 1 Score: 500 bits (1288), Expect = 2.66e-178
Identity = 254/258 (98.45%), Postives = 255/258 (98.84%), Query Frame = 0 

Query: 1   MAKKATPTTTTYSPSPTVHKTRPPLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASGS 60
           MAKKATPTTTTYSPSPTVHKTRP LFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASGS
Sbjct: 1   MAKKATPTTTTYSPSPTVHKTRPSLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASGS 60

Query: 61  AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKDFSSMLH 120
           AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKDFSSMLH
Sbjct: 61  AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKDFSSMLH 120

Query: 121 KSLEGAIILESFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSC 180
           KSLEGAIILESFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSC
Sbjct: 121 KSLEGAIILESFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSC 180

Query: 181 FGKNLLIDPILEEENYQDGSLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCKL 240
           FGKNLLID +LEEENYQDGSLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCKL
Sbjct: 181 FGKNLLIDTVLEEENYQDGSLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCKL 240

Query: 241 VEIMRSCLKESAATISEE 258
           VEIMRSCLKESA TISEE
Sbjct: 241 VEIMRSCLKESAVTISEE 258

[Close]
BLAST of Chy11G193980 vs. NCBI nr
Match: XP_038900607.1 (exosome complex component RRP41-like isoform X1 [Benincasa hispida] >XP_038900608.1 exosome complex component RRP41-like isoform X1 [Benincasa hispida] >XP_038900609.1 exosome complex component RRP41-like isoform X1 [Benincasa hispida])

HSP 1 Score: 487 bits (1253), Expect = 5.76e-173
Identity = 245/258 (94.96%), Postives = 254/258 (98.45%), Query Frame = 0 

Query: 1   MAKKATPTTTTYSPSPTVHKTRPPLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASGS 60
           MAKKATPTTTTYSPSPT+ KTRPP+FRT DV+WVR DGRGFHQCRPAFFRTGAVNAASGS
Sbjct: 1   MAKKATPTTTTYSPSPTIQKTRPPIFRTGDVDWVRSDGRGFHQCRPAFFRTGAVNAASGS 60

Query: 61  AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKDFSSMLH 120
           AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENK+FSSMLH
Sbjct: 61  AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKEFSSMLH 120

Query: 121 KSLEGAIILESFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSC 180
           K+LEGAI+LE+FPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSC
Sbjct: 121 KALEGAIMLETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSC 180

Query: 181 FGKNLLIDPILEEENYQDGSLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCKL 240
           FGKNLLIDP LEEENYQDGSLMITCMPSRYEVTQLTITGEW+T+KINEGMQLCLDASCKL
Sbjct: 181 FGKNLLIDPTLEEENYQDGSLMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKL 240

Query: 241 VEIMRSCLKESAATISEE 258
           VEIMRSCLKESAATISEE
Sbjct: 241 VEIMRSCLKESAATISEE 258

[Close]
BLAST of Chy11G193980 vs. NCBI nr
Match: KAG6570792.1 (Exosome complex component RRP41-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 486 bits (1250), Expect = 1.65e-172
Identity = 243/258 (94.19%), Postives = 253/258 (98.06%), Query Frame = 0 

Query: 1   MAKKATPTTTTYSPSPTVHKTRPPLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASGS 60
           MAKKATP T+TYSPSPT HKTRPP+FR+DDV+WVRPDGR FHQCRPAFFRTGAVNAASGS
Sbjct: 1   MAKKATPATSTYSPSPTTHKTRPPIFRSDDVDWVRPDGRSFHQCRPAFFRTGAVNAASGS 60

Query: 61  AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKDFSSMLH 120
           AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENK+FSSMLH
Sbjct: 61  AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKEFSSMLH 120

Query: 121 KSLEGAIILESFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSC 180
           K+LEGAIILE+FPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSC
Sbjct: 121 KALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSC 180

Query: 181 FGKNLLIDPILEEENYQDGSLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCKL 240
           FGKNLLIDP LEEENYQDGSLMITCMPSRYEVTQLTITGEW+T+KINEGMQLCLDASCKL
Sbjct: 181 FGKNLLIDPALEEENYQDGSLMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKL 240

Query: 241 VEIMRSCLKESAATISEE 258
           V IMRSCLKESAAT+SEE
Sbjct: 241 VTIMRSCLKESAATVSEE 258

[Close]
BLAST of Chy11G193980 vs. NCBI nr
Match: XP_022986160.1 (exosome complex component RRP41-like [Cucurbita maxima])

HSP 1 Score: 486 bits (1250), Expect = 1.65e-172
Identity = 243/258 (94.19%), Postives = 253/258 (98.06%), Query Frame = 0 

Query: 1   MAKKATPTTTTYSPSPTVHKTRPPLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASGS 60
           MAKKATP T+TYSPSPT HKTRPP+FR+DDV+WVRPDGR FHQCRPAFFRTGAVNAASGS
Sbjct: 1   MAKKATPATSTYSPSPTTHKTRPPIFRSDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGS 60

Query: 61  AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKDFSSMLH 120
           AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENK+FSSMLH
Sbjct: 61  AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKEFSSMLH 120

Query: 121 KSLEGAIILESFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSC 180
           K+LEGAIILE+FPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSC
Sbjct: 121 KALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSC 180

Query: 181 FGKNLLIDPILEEENYQDGSLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCKL 240
           FGKNLLIDP LEEENYQDGSLMITCMPSRYEVTQLTITGEW+T+KINEGMQLCLDASCKL
Sbjct: 181 FGKNLLIDPALEEENYQDGSLMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKL 240

Query: 241 VEIMRSCLKESAATISEE 258
           V IMRSCLKESAAT+SEE
Sbjct: 241 VTIMRSCLKESAATVSEE 258

[Close]
BLAST of Chy11G193980 vs. TAIR 10
Match: AT4G27490.1 (3'-5'-exoribonuclease family protein )

HSP 1 Score: 380.2 bits (975), Expect = 1.3e-105
Identity = 186/257 (72.37%), Postives = 221/257 (85.99%), Query Frame = 0 

Query: 1   MAKKATPTTTTYSPSPTVHKTRPPLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASGS 60
           MA K    T TYSP   V ++R P+F+  D++W RPDGRGFHQCRPA  +TGAV++ASGS
Sbjct: 1   MAAKPGAATPTYSPK-IVGRSRLPIFKDSDLDWSRPDGRGFHQCRPALLQTGAVSSASGS 60

Query: 61  AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKDFSSMLH 120
           AYAEFGNTKVIVSVFGPRESKKAM+YSD+GRLNC+VSYT F++P  GQG+++K++SSMLH
Sbjct: 61  AYAEFGNTKVIVSVFGPRESKKAMVYSDVGRLNCNVSYTNFASPTLGQGTDHKEYSSMLH 120

Query: 121 KSLEGAIILESFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSC 180
           K+LEG I++E+FPKTTVDVFALVLESGGSDL V+ISCASLALADAGIM+YDL+ +VSVSC
Sbjct: 121 KALEGVIMMETFPKTTVDVFALVLESGGSDLSVLISCASLALADAGIMMYDLITAVSVSC 180

Query: 181 FGKNLLIDPILEEENYQDGSLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCKL 240
            GK+L+IDP+ EEE  +DGS M+TCMPSRYE+TQLTITGEWTT  INE MQLCLDAS KL
Sbjct: 181 IGKSLMIDPVTEEEGCEDGSFMMTCMPSRYEITQLTITGEWTTPNINEAMQLCLDASSKL 240

Query: 241 VEIMRSCLKESAATISE 258
            EIMR CLK+SA+   E
Sbjct: 241 GEIMRDCLKQSASASDE 256

[Close]
BLAST of Chy11G193980 vs. TAIR 10
Match: AT3G61620.1 (3'-5'-exoribonuclease family protein )

HSP 1 Score: 99.4 bits (246), Expect = 4.6e-21
Identity = 67/223 (30.04%), Postives = 108/223 (48.43%), Query Frame = 0 

Query: 34  VRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRE--SKKAMMYSDIGR 93
           +R DGR F++ R      G V+ A GSA  E GNTKVI +V+GPRE  +K     +D   
Sbjct: 9   LRLDGRRFNEMRQIVAEVGVVSKADGSAVFEMGNTKVIAAVYGPREIQNKSQQKKNDHAV 68

Query: 94  LNCSVSYTTFSTPVRGQ---GSENKDFSSMLHKSLEGAIILESFPKTTVDVFALVLESGG 153
           + C  S   FST  R +      + + S ++ +++E  I+ E  P + +D+F  VL++ G
Sbjct: 69  VLCEYSMAQFSTGDRRRQKFDRRSTELSLVIRQTMEACILTELMPHSQIDIFLQVLQADG 128

Query: 154 SDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPILEEENYQDGSLMITCMPS 213
                 I+ A+LALADAGI + DL  S S        L+D    E++     + +  +P 
Sbjct: 129 GTRSACINAATLALADAGIPMRDLAVSCSAGYLNSTPLLDLNYVEDSAGGADVTVGILPK 188

Query: 214 RYEVTQLTITGEWTTSKINEGMQLCLDASCKLVEIMRSCLKES 252
             +V+ L +  +           L  +    + E +R  L+E+
Sbjct: 189 LDKVSLLQMDAKLPMETFETVFALASEGCKAIAERIREVLQEN 231

[Close]
BLAST of Chy11G193980 vs. TAIR 10
Match: AT3G61620.2 (3'-5'-exoribonuclease family protein )

HSP 1 Score: 99.4 bits (246), Expect = 4.6e-21
Identity = 67/223 (30.04%), Postives = 108/223 (48.43%), Query Frame = 0 

Query: 34  VRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRE--SKKAMMYSDIGR 93
           +R DGR F++ R      G V+ A GSA  E GNTKVI +V+GPRE  +K     +D   
Sbjct: 9   LRLDGRRFNEMRQIVAEVGVVSKADGSAVFEMGNTKVIAAVYGPREIQNKSQQKKNDHAV 68

Query: 94  LNCSVSYTTFSTPVRGQ---GSENKDFSSMLHKSLEGAIILESFPKTTVDVFALVLESGG 153
           + C  S   FST  R +      + + S ++ +++E  I+ E  P + +D+F  VL++ G
Sbjct: 69  VLCEYSMAQFSTGDRRRQKFDRRSTELSLVIRQTMEACILTELMPHSQIDIFLQVLQADG 128

Query: 154 SDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPILEEENYQDGSLMITCMPS 213
                 I+ A+LALADAGI + DL  S S        L+D    E++     + +  +P 
Sbjct: 129 GTRSACINAATLALADAGIPMRDLAVSCSAGYLNSTPLLDLNYVEDSAGGADVTVGILPK 188

Query: 214 RYEVTQLTITGEWTTSKINEGMQLCLDASCKLVEIMRSCLKES 252
             +V+ L +  +           L  +    + E +R  L+E+
Sbjct: 189 LDKVSLLQMDAKLPMETFETVFALASEGCKAIAERIREVLQEN 231

[Close]
BLAST of Chy11G193980 vs. TAIR 10
Match: AT3G46210.1 (Ribosomal protein S5 domain 2-like superfamily protein )

HSP 1 Score: 67.0 bits (162), Expect = 2.5e-11
Identity = 50/163 (30.67%), Postives = 77/163 (47.24%), Query Frame = 0 

Query: 35  RPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNC 94
           R DGR  +Q RP       ++   GSA    G+TKV+ +V+GP+   K    ++      
Sbjct: 5   REDGRTPNQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKAGTKKNENAE------ 64

Query: 95  SVSYTTFSTPVRGQ-GSENKDFSSMLHKSLEGAIILESFPKTTVDVFALVLESGGSDLPV 154
              +     P  GQ G   K++  +L ++++   +L   P TT  V   V+   GS LP 
Sbjct: 65  KACFEVIWKPKSGQIGKVEKEYEMILKRTIQSICVLTVNPNTTTSVIIQVVHDDGSLLPC 124

Query: 155 VISCASLALADAGIMLYDLVASVSVSCFGKN--LLIDPILEEE 195
            I+ A  AL DAGI +  L  ++   C  +N  L++DP   EE
Sbjct: 125 AINAACAALVDAGIPMKHLAVAI-CCCLAENGYLVLDPNKLEE 160

[Close]
BLAST of Chy11G193980 vs. TAIR 10
Match: AT3G46210.2 (Ribosomal protein S5 domain 2-like superfamily protein )

HSP 1 Score: 67.0 bits (162), Expect = 2.5e-11
Identity = 50/163 (30.67%), Postives = 77/163 (47.24%), Query Frame = 0 

Query: 35  RPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNC 94
           R DGR  +Q RP       ++   GSA    G+TKV+ +V+GP+   K    ++      
Sbjct: 5   REDGRTPNQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKAGTKKNENAE------ 64

Query: 95  SVSYTTFSTPVRGQ-GSENKDFSSMLHKSLEGAIILESFPKTTVDVFALVLESGGSDLPV 154
              +     P  GQ G   K++  +L ++++   +L   P TT  V   V+   GS LP 
Sbjct: 65  KACFEVIWKPKSGQIGKVEKEYEMILKRTIQSICVLTVNPNTTTSVIIQVVHDDGSLLPC 124

Query: 155 VISCASLALADAGIMLYDLVASVSVSCFGKN--LLIDPILEEE 195
            I+ A  AL DAGI +  L  ++   C  +N  L++DP   EE
Sbjct: 125 AINAACAALVDAGIPMKHLAVAI-CCCLAENGYLVLDPNKLEE 160

The following BLAST results are available for this feature:
BLAST of Chy11G193980 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
A2RVK71.9e-10472.37Exosome complex component RRP41-like OS=Arabidopsis thaliana OX=3702 GN=RRP41L P... [more]
Q6P0I87.4e-3238.29Exosome complex component MTR3 OS=Danio rerio OX=7955 GN=exosc6 PE=2 SV=2[more]
Q8U0L91.3e-2833.61Exosome complex component Rrp41 OS=Pyrococcus furiosus (strain ATCC 43587 / DSM ... [more]
O592232.2e-2833.20Exosome complex component Rrp41 OS=Pyrococcus horikoshii (strain ATCC 700860 / D... [more]
B6YSI23.8e-2832.78Exosome complex component Rrp41 OS=Thermococcus onnurineus (strain NA1) OX=52385... [more]
BLAST of Chy11G193980 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3CKF34.2e-13998.84exosome complex component RRP41-like OS=Cucumis melo OX=3656 GN=LOC103501959 PE=... [more]
A0A0A0KEK67.2e-13998.45Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G146430 PE=4 SV=1[more]
A0A6J1JDA91.8e-13494.19exosome complex component RRP41-like OS=Cucurbita maxima OX=3661 GN=LOC111483981... [more]
A0A6J1FYV11.8e-13494.19exosome complex component RRP41-like OS=Cucurbita moschata OX=3662 GN=LOC1114490... [more]
A0A6J1CHT01.3e-13292.64exosome complex component RRP41-like OS=Momordica charantia OX=3673 GN=LOC111011... [more]
BLAST of Chy11G193980 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008463959.11.37e-17898.84PREDICTED: exosome complex component RRP41-like [Cucumis melo][more]
XP_004145749.12.66e-17898.45exosome complex component RRP41-like [Cucumis sativus] >KGN46847.1 hypothetical ... [more]
XP_038900607.15.76e-17394.96exosome complex component RRP41-like isoform X1 [Benincasa hispida] >XP_03890060... [more]
KAG6570792.11.65e-17294.19Exosome complex component RRP41-like protein, partial [Cucurbita argyrosperma su... [more]
XP_022986160.11.65e-17294.19exosome complex component RRP41-like [Cucurbita maxima][more]
BLAST of Chy11G193980 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G27490.11.3e-10572.373'-5'-exoribonuclease family protein [more]
AT3G61620.14.6e-2130.043'-5'-exoribonuclease family protein [more]
AT3G61620.24.6e-2130.043'-5'-exoribonuclease family protein [more]
AT3G46210.12.5e-1130.67Ribosomal protein S5 domain 2-like superfamily protein [more]
AT3G46210.22.5e-1130.67Ribosomal protein S5 domain 2-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR027408PNPase/RNase PH domain superfamilyGENE3D3.30.230.70coord: 31..256
e-value: 1.2E-60
score: 206.9
IPR015847Exoribonuclease, phosphorolytic domain 2PFAMPF03725RNase_PH_Ccoord: 171..231
e-value: 1.3E-6
score: 28.3
IPR001247Exoribonuclease, phosphorolytic domain 1PFAMPF01138RNase_PHcoord: 43..167
e-value: 4.0E-29
score: 101.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..24
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..18
NoneNo IPR availablePANTHERPTHR11953:SF2EXOSOME COMPLEX COMPONENT MTR3coord: 10..252
NoneNo IPR availablePANTHERPTHR11953EXOSOME COMPLEX COMPONENTcoord: 10..252
NoneNo IPR availableCDDcd11371RNase_PH_MTR3coord: 44..250
e-value: 9.91009E-103
score: 295.629
IPR036345Exoribonuclease, PH domain 2 superfamilySUPERFAMILY55666Ribonuclease PH domain 2-likecoord: 169..256
IPR020568Ribosomal protein S5 domain 2-type foldSUPERFAMILY54211Ribosomal protein S5 domain 2-likecoord: 32..198

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy11G193980.1Chy11G193980.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0071028 nuclear mRNA surveillance
biological_process GO:0034427 nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
biological_process GO:0090305 nucleic acid phosphodiester bond hydrolysis
biological_process GO:0071051 polyadenylation-dependent snoRNA 3'-end processing
biological_process GO:0016075 rRNA catabolic process
biological_process GO:0009845 seed germination
biological_process GO:0034475 U4 snRNA 3'-end processing
cellular_component GO:0000177 cytoplasmic exosome (RNase complex)
cellular_component GO:0000176 nuclear exosome (RNase complex)
cellular_component GO:0005730 nucleolus
molecular_function GO:0008408 3'-5' exonuclease activity
molecular_function GO:0016740 transferase activity