Chy11G192670 (gene) Cucumber (hystrix) v1

Overview


Name	Chy11G192670
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Transpos_assoc domain-containing protein
Location	chrH11: 8710321 .. 8711341 (+)
RNA-Seq Expression	Chy11G192670
Synteny	Chy11G192670

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGTTTAGGGCTGGATTGGTATTGATTTCATTCTAATTTTCTGCTCATAATTTACTTGATACTTTTTCTTAAGCTCATGAAATGTAGAGATTTTTATTTATACGCTTTGATTTTTTTTTTTTTTTTTTTTTTTTGTTGAATGGGAGATTTTCTTTCTCTACTGATATAATGAAATGTAAATTTAATTTAATTTGTAGGGAACTTATGTTTAGGGCATCAAAGAAGAAGTTGTTTTGTCCCTTGCTCATGCTCTTTCCTTGATAGCATCTGAAGAAGGTTAGAGTAGTATAAAGCTACTTTTAGCATTTGATCTATTGAAATGTACTAATTTTCTAGGTTGGTTATTTGCTGGGTTTACGATTCCTTTAATTGTGTCATTTTGATGGTTTATTATTTTTGTTTTTGTTTCCACATTGTACCTATTCAATACTTAATCATTTTGTTTATCAAACTCCATGCTCCAGTAACATAGAATCAAACCATTAGCATAAATTCAAAGAAAGGAAAGCAGAAACTTAATAGAATTATTAATACAGTCGTACTTAATTGTGTTCCTTAACCCACTTTCAACATATTTATTTCATAGACCATGAGTAATCCTATCATAATTGTGGTGTGGTGAATATTATCTATATTAGGTTTAAGCTTTGCTTATACAAAAATGCCCCTCCATCTCCTAATCTCGATCCATTGGCCTATGTTGACAAATCTAGAGTTGCCATCATAAATCGTTAAATTTATCTAAATCCATCAACAAGGATATAACTTGGATATTTGAAGTCTTAGGTGCTTTCTAAATTCTATCCTCTATTTAATTATTCTATAGGTGTTATTGGATAACATGGATAGAAGTTGGATGCAAATTGGAACTCGAGTATTGGAAGAATACAAAAATGGAGTTAGAAGTTTTTTAGATTTTGAGTTTATGCATACAACATCAAATCATATATCTTGTCCATGCAAGAGATGTAATAATGCAGTACTTAAAACTCAAGATGATGTTAAAGCAGATTTGTTG

mRNA sequence

ATGTTGTTTAGGGCTGGATTGGTGTTATTGGATAACATGGATAGAAGTTGGATGCAAATTGGAACTCGAGTATTGGAAGAATACAAAAATGGAGTTAGAAGTTTTTTAGATTTTGAGTTTATGCATACAACATCAAATCATATATCTTGTCCATGCAAGAGATGTAATAATGCAGTACTTAAAACTCAAGATGATGTTAAAGCAGATTTGTTG

Coding sequence (CDS)

ATGTTGTTTAGGGCTGGATTGGTGTTATTGGATAACATGGATAGAAGTTGGATGCAAATTGGAACTCGAGTATTGGAAGAATACAAAAATGGAGTTAGAAGTTTTTTAGATTTTGAGTTTATGCATACAACATCAAATCATATATCTTGTCCATGCAAGAGATGTAATAATGCAGTACTTAAAACTCAAGATGATGTTAAAGCAGATTTGTTG

Protein sequence

MLFRAGLVLLDNMDRSWMQIGTRVLEEYKNGVRSFLDFEFMHTTSNHISCPCKRCNNAVLKTQDDVKADLL

Homology

[Close]

BLAST of Chy11G192670 vs. ExPASy TrEMBL
Match: A0A7N2LSD7 (Kinesin motor domain-containing protein OS=Quercus lobata OX=97700 PE=3 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 3.5e-11
Identity = 33/60 (55.00%), Postives = 45/60 (75.00%), Query Frame = 0


Query: 13 MDRSWMQIGTRVLEEYKNGVRSFLDFEFMHTT-SNHISCPCKRCNNAVLKTQDDVKADLL 72
          M+R+W+++  R L EY+ G++ FLDF F HTT  + I CPCK+CNN   KT+DDV+ADLL
Sbjct: 1  MERNWVKLRNRALLEYRQGIKDFLDFAFEHTTMGDKIYCPCKKCNNYFAKTRDDVEADLL 60

[Close]

BLAST of Chy11G192670 vs. ExPASy TrEMBL
Match: A0A7N2LJE8 (Kinesin motor domain-containing protein OS=Quercus lobata OX=97700 PE=3 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 2.3e-10
Identity = 32/60 (53.33%), Postives = 44/60 (73.33%), Query Frame = 0


Query: 13 MDRSWMQIGTRVLEEYKNGVRSFLDFEFMHTTSNH-ISCPCKRCNNAVLKTQDDVKADLL 72
          M+ +W+++  R L EY+ G++ FLDF F HTT  + I CPCK+CNN   KT+DDV+ADLL
Sbjct: 1  MEWNWVKLRNRALLEYRQGIKDFLDFAFEHTTMGYKIYCPCKKCNNYFAKTRDDVEADLL 60

[Close]

BLAST of Chy11G192670 vs. ExPASy TrEMBL
Match: A0A7N2KKH6 (Kinesin motor domain-containing protein OS=Quercus lobata OX=97700 PE=3 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 2.3e-10
Identity = 32/60 (53.33%), Postives = 44/60 (73.33%), Query Frame = 0


Query: 13 MDRSWMQIGTRVLEEYKNGVRSFLDFEFMHTTSNH-ISCPCKRCNNAVLKTQDDVKADLL 72
          M+ +W+++  R L EY+ G++ FLDF F HTT  + I CPCK+CNN   KT+DDV+ADLL
Sbjct: 1  MEWNWVKLRNRALLEYRQGIKDFLDFAFEHTTMGYKIYCPCKKCNNYFAKTRDDVEADLL 60

[Close]

BLAST of Chy11G192670 vs. ExPASy TrEMBL
Match: A0A2N9GUI6 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS30961 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.9e-10
Identity = 32/60 (53.33%), Postives = 44/60 (73.33%), Query Frame = 0


Query: 13  MDRSWMQIGTRVLEEYKNGVRSFLDFEFMHTT-SNHISCPCKRCNNAVLKTQDDVKADLL 72
           M+ +W++I  R L EY+ GV+ FLDF F HTT  + I CPCKRCN+   K++DDV+ADL+
Sbjct: 83  MEHNWVKIRNRALPEYRQGVKEFLDFAFEHTTMEDKILCPCKRCNHYFAKSRDDVEADLI 142

[Close]

BLAST of Chy11G192670 vs. ExPASy TrEMBL
Match: A0A2N9HCP8 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS40018 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.9e-10
Identity = 32/60 (53.33%), Postives = 44/60 (73.33%), Query Frame = 0


Query: 13 MDRSWMQIGTRVLEEYKNGVRSFLDFEFMHTT-SNHISCPCKRCNNAVLKTQDDVKADLL 72
          M+ +W++I  R L EY+ GV+ FLDF F HTT  + I CPCKRCN+   K++DDV+ADL+
Sbjct: 1  MEHNWVKIRNRALPEYRQGVKEFLDFAFEHTTMEDKILCPCKRCNHYFAKSRDDVEADLI 60

[Close]

BLAST of Chy11G192670 vs. NCBI nr
Match: XP_038882387.1 (uncharacterized protein LOC120073655 [Benincasa hispida])

HSP 1 Score: 105 bits (262), Expect = 1.50e-25
Identity = 46/59 (77.97%), Postives = 52/59 (88.14%), Query Frame = 0


Query: 13 MDRSWMQIGTRVLEEYKNGVRSFLDFEFMHTTSNHISCPCKRCNNAVLKTQDDVKADLL 71
          MDRSWMQIG RVL+EY+NGVRSFLDF FMH T+  ISCPCKRCNN VLKT+D+V+ DLL
Sbjct: 1  MDRSWMQIGNRVLQEYRNGVRSFLDFAFMHATTTQISCPCKRCNNVVLKTRDNVEEDLL 59

[Close]

BLAST of Chy11G192670 vs. NCBI nr
Match: XP_030950831.1 (uncharacterized protein LOC115974558 [Quercus lobata])

HSP 1 Score: 74.3 bits (181), Expect = 1.50e-14
Identity = 32/60 (53.33%), Postives = 44/60 (73.33%), Query Frame = 0


Query: 13 MDRSWMQIGTRVLEEYKNGVRSFLDFEFMHTTSNH-ISCPCKRCNNAVLKTQDDVKADLL 71
          M+ +W+++  R L EY+ G++ FLDF F HTT  + I CPCK+CNN   KT+DDV+ADLL
Sbjct: 1  MEWNWVKLRNRALLEYRQGIKDFLDFAFEHTTMGYKIYCPCKKCNNYFAKTRDDVEADLL 60

[Close]

BLAST of Chy11G192670 vs. NCBI nr
Match: XP_030953586.1 (uncharacterized protein LOC115976445 [Quercus lobata] >XP_030953587.1 uncharacterized protein LOC115976445 [Quercus lobata])

HSP 1 Score: 75.5 bits (184), Expect = 8.07e-14
Identity = 33/60 (55.00%), Postives = 43/60 (71.67%), Query Frame = 0


Query: 13 MDRSWMQIGTRVLEEYKNGVRSFLDFEFMHTT-SNHISCPCKRCNNAVLKTQDDVKADLL 71
          M+ +W+++ +R   EY+ GV+ FLDF F HTT  N I CPCKRCNN   KT+DDV+ DLL
Sbjct: 1  MEHNWVKLRSRAHPEYRQGVKDFLDFAFEHTTMGNKIFCPCKRCNNYFAKTRDDVEGDLL 60

[Close]

BLAST of Chy11G192670 vs. NCBI nr
Match: KAF3963785.1 (hypothetical protein CMV_011859 [Castanea mollissima])

HSP 1 Score: 75.1 bits (183), Expect = 1.10e-13
Identity = 33/60 (55.00%), Postives = 42/60 (70.00%), Query Frame = 0


Query: 13 MDRSWMQIGTRVLEEYKNGVRSFLDFEFMHTT-SNHISCPCKRCNNAVLKTQDDVKADLL 71
          M+ +W+++  R L EY+ GV+ FLDF F HTT  N   CPCKRCNN   KT+DDV+ DLL
Sbjct: 1  MEHNWVKLRNRALPEYRQGVKDFLDFAFEHTTMGNKNFCPCKRCNNYFAKTRDDVEGDLL 60

[Close]

BLAST of Chy11G192670 vs. NCBI nr
Match: XP_023893229.1 (uncharacterized protein LOC112005206 [Quercus suber])

HSP 1 Score: 75.1 bits (183), Expect = 1.10e-13
Identity = 33/60 (55.00%), Postives = 42/60 (70.00%), Query Frame = 0


Query: 13 MDRSWMQIGTRVLEEYKNGVRSFLDFEFMHTT-SNHISCPCKRCNNAVLKTQDDVKADLL 71
          M+ +W+++  R   EY+ GV+ FLDF F HTT  N I CPCKRCNN   KT+DDV+ DLL
Sbjct: 1  MEHNWVKLRNRAHPEYRQGVKDFLDFAFEHTTMGNKIFCPCKRCNNYFAKTRDDVEGDLL 60

The following BLAST results are available for this feature:

BLAST of Chy11G192670 vs.


Match Name	E-value	Identity	Description

BLAST of Chy11G192670 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7N2LSD7	3.5e-11	55.00	Kinesin motor domain-containing protein OS=Quercus lobata OX=97700 PE=3 SV=1	[more]
A0A7N2LJE8	2.3e-10	53.33	Kinesin motor domain-containing protein OS=Quercus lobata OX=97700 PE=3 SV=1	[more]
A0A7N2KKH6	2.3e-10	53.33	Kinesin motor domain-containing protein OS=Quercus lobata OX=97700 PE=3 SV=1	[more]
A0A2N9GUI6	2.9e-10	53.33	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS30961 PE=4 SV=1	[more]
A0A2N9HCP8	2.9e-10	53.33	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS40018 PE=4 SV=1	[more]

BLAST of Chy11G192670 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038882387.1	1.50e-25	77.97	uncharacterized protein LOC120073655 [Benincasa hispida]	[more]
XP_030950831.1	1.50e-14	53.33	uncharacterized protein LOC115974558 [Quercus lobata]	[more]
XP_030953586.1	8.07e-14	55.00	uncharacterized protein LOC115976445 [Quercus lobata] >XP_030953587.1 uncharacte...	[more]
KAF3963785.1	1.10e-13	55.00	hypothetical protein CMV_011859 [Castanea mollissima]	[more]
XP_023893229.1	1.10e-13	55.00	uncharacterized protein LOC112005206 [Quercus suber]	[more]

BLAST of Chy11G192670 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR029480	Transposase-associated domain	PFAM	PF13963	Transpos_assoc	coord: 15..70 e-value: 8.3E-15 score: 54.7

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy11G192670.1	Chy11G192670.1	mRNA