Chy11G192660 (gene) Cucumber (hystrix) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCCAATTCCTCTGGTTCTGCTTCTTTGTTTGAGGGGTATGTCTCTTCCATCCATGACGCTGCTCCAACACAATAAACCAAAACCTCTGAGGCCTCATCATCTTGTTGTGCCAGGTTTCACATCTTTGACTCTAAATCCATTGAAACCATTATTGTTGATTCTCCTACTCTAGTGAAGACAATGTGATTTTGTCTGATATACTGAAACGAAAAGTCTCAACAACTGTATCCCCTCAGAAAGTTACACTGACAAACAAATGTAAGAAACCTTTTATCTCAAGTCTATCCAACGCTGATGATCTTTACGTTGCCTTATTCGGTACCTCATCTACCCCGCGACATGCCCCATCCATGGGATCTGTTCCGTCATCCTCAAGGCCTGGCTCATCTGCTTCTAAAAAATTACCAAAGACCACTATTGAGGATCTCTTCACTGAGTTCACCAAAGATCCGAAAGAACCCTCCTATAGGGTTCATTAG ATGTCCAATTCCTCTGGTTCTGCTTCTTTGTTTGAGGGTGAAGACAATGTGATTTTGTCTGATATACTGAAACGAAAAGTCTCAACAACTGTATCCCCTCAGAAAGTTACACTGACAAACAAATGTAAGAAACCTTTTATCTCAAGTCTATCCAACGCTGATGATCTTTACGTTGCCTTATTCGGTACCTCATCTACCCCGCGACATGCCCCATCCATGGGATCTGTTCCGTCATCCTCAAGGCCTGGCTCATCTGCTTCTAAAAAATTACCAAAGACCACTATTGAGGATCTCTTCACTGAGTTCACCAAAGATCCGAAAGAACCCTCCTATAGGGTTCATTAG ATGTCCAATTCCTCTGGTTCTGCTTCTTTGTTTGAGGGTGAAGACAATGTGATTTTGTCTGATATACTGAAACGAAAAGTCTCAACAACTGTATCCCCTCAGAAAGTTACACTGACAAACAAATGTAAGAAACCTTTTATCTCAAGTCTATCCAACGCTGATGATCTTTACGTTGCCTTATTCGGTACCTCATCTACCCCGCGACATGCCCCATCCATGGGATCTGTTCCGTCATCCTCAAGGCCTGGCTCATCTGCTTCTAAAAAATTACCAAAGACCACTATTGAGGATCTCTTCACTGAGTTCACCAAAGATCCGAAAGAACCCTCCTATAGGGTTCATTAG MSNSSGSASLFEGEDNVILSDILKRKVSTTVSPQKVTLTNKCKKPFISSLSNADDLYVALFGTSSTPRHAPSMGSVPSSSRPGSSASKKLPKTTIEDLFTEFTKDPKEPSYRVH* Homology
BLAST of Chy11G192660 vs. ExPASy TrEMBL
Match: A0A0A0KYY8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G256930 PE=4 SV=1) HSP 1 Score: 93.2 bits (230), Expect = 7.6e-16 Identity = 52/78 (66.67%), Postives = 59/78 (75.64%), Query Frame = 0
BLAST of Chy11G192660 vs. ExPASy TrEMBL
Match: A0A5A7UBA4 (Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60G00390 PE=4 SV=1) HSP 1 Score: 56.6 bits (135), Expect = 7.9e-05 Identity = 36/93 (38.71%), Postives = 48/93 (51.61%), Query Frame = 0
BLAST of Chy11G192660 vs. ExPASy TrEMBL
Match: A0A5D3BFA1 (Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold234G00410 PE=4 SV=1) HSP 1 Score: 56.6 bits (135), Expect = 7.9e-05 Identity = 36/93 (38.71%), Postives = 48/93 (51.61%), Query Frame = 0
BLAST of Chy11G192660 vs. NCBI nr
Match: TYJ97943.1 (flocculation protein FLO11-like [Cucumis melo var. makuwa]) HSP 1 Score: 58.2 bits (139), Expect = 5.18e-07 Identity = 39/96 (40.62%), Postives = 52/96 (54.17%), Query Frame = 0
BLAST of Chy11G192660 vs. NCBI nr
Match: KAA0051667.1 (flocculation protein FLO11-like [Cucumis melo var. makuwa]) HSP 1 Score: 58.2 bits (139), Expect = 5.19e-07 Identity = 39/96 (40.62%), Postives = 52/96 (54.17%), Query Frame = 0
BLAST of Chy11G192660 vs. NCBI nr
Match: KAA0032272.1 (uncharacterized protein E6C27_scaffold219G001100 [Cucumis melo var. makuwa] >TYK17076.1 uncharacterized protein E5676_scaffold1327G00250 [Cucumis melo var. makuwa]) HSP 1 Score: 49.7 bits (117), Expect = 1.37e-04 Identity = 30/72 (41.67%), Postives = 44/72 (61.11%), Query Frame = 0
BLAST of Chy11G192660 vs. NCBI nr
Match: KAA0043039.1 (flocculation protein FLO11-like [Cucumis melo var. makuwa]) HSP 1 Score: 50.1 bits (118), Expect = 2.95e-04 Identity = 35/94 (37.23%), Postives = 47/94 (50.00%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
|