Chy11G192660 (gene) Cucumber (hystrix) v1

Overview


Name	Chy11G192660
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Flocculation protein FLO11-like
Location	chrH11: 8694939 .. 8695420 (-)
RNA-Seq Expression	Chy11G192660
Synteny	Chy11G192660

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCAATTCCTCTGGTTCTGCTTCTTTGTTTGAGGGGTATGTCTCTTCCATCCATGACGCTGCTCCAACACAATAAACCAAAACCTCTGAGGCCTCATCATCTTGTTGTGCCAGGTTTCACATCTTTGACTCTAAATCCATTGAAACCATTATTGTTGATTCTCCTACTCTAGTGAAGACAATGTGATTTTGTCTGATATACTGAAACGAAAAGTCTCAACAACTGTATCCCCTCAGAAAGTTACACTGACAAACAAATGTAAGAAACCTTTTATCTCAAGTCTATCCAACGCTGATGATCTTTACGTTGCCTTATTCGGTACCTCATCTACCCCGCGACATGCCCCATCCATGGGATCTGTTCCGTCATCCTCAAGGCCTGGCTCATCTGCTTCTAAAAAATTACCAAAGACCACTATTGAGGATCTCTTCACTGAGTTCACCAAAGATCCGAAAGAACCCTCCTATAGGGTTCATTAG

mRNA sequence

ATGTCCAATTCCTCTGGTTCTGCTTCTTTGTTTGAGGGTGAAGACAATGTGATTTTGTCTGATATACTGAAACGAAAAGTCTCAACAACTGTATCCCCTCAGAAAGTTACACTGACAAACAAATGTAAGAAACCTTTTATCTCAAGTCTATCCAACGCTGATGATCTTTACGTTGCCTTATTCGGTACCTCATCTACCCCGCGACATGCCCCATCCATGGGATCTGTTCCGTCATCCTCAAGGCCTGGCTCATCTGCTTCTAAAAAATTACCAAAGACCACTATTGAGGATCTCTTCACTGAGTTCACCAAAGATCCGAAAGAACCCTCCTATAGGGTTCATTAG

Coding sequence (CDS)

ATGTCCAATTCCTCTGGTTCTGCTTCTTTGTTTGAGGGTGAAGACAATGTGATTTTGTCTGATATACTGAAACGAAAAGTCTCAACAACTGTATCCCCTCAGAAAGTTACACTGACAAACAAATGTAAGAAACCTTTTATCTCAAGTCTATCCAACGCTGATGATCTTTACGTTGCCTTATTCGGTACCTCATCTACCCCGCGACATGCCCCATCCATGGGATCTGTTCCGTCATCCTCAAGGCCTGGCTCATCTGCTTCTAAAAAATTACCAAAGACCACTATTGAGGATCTCTTCACTGAGTTCACCAAAGATCCGAAAGAACCCTCCTATAGGGTTCATTAG

Protein sequence

MSNSSGSASLFEGEDNVILSDILKRKVSTTVSPQKVTLTNKCKKPFISSLSNADDLYVALFGTSSTPRHAPSMGSVPSSSRPGSSASKKLPKTTIEDLFTEFTKDPKEPSYRVH*

Homology

[Close]

BLAST of Chy11G192660 vs. ExPASy TrEMBL
Match: A0A0A0KYY8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G256930 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 7.6e-16
Identity = 52/78 (66.67%), Postives = 59/78 (75.64%), Query Frame = 0


Query: 37  TLTNKCKKPFISSLSNADDLYVALFGTSSTPRHAPSMGSVPSSSRPGSSASKKLPKTTIE 96
           T  +KCKKPF+S LSNAD+LY ALFGT   PRHA  MGSVPSSS  GSSA +KL KT IE
Sbjct: 27  TPLDKCKKPFVSGLSNADNLYEALFGTFFGPRHALPMGSVPSSSWLGSSAPRKLLKTIIE 86

Query: 97  DLFTEFTKDPKEPSYRVH 115
           DLFTEF +D +  S R+H
Sbjct: 87  DLFTEFAQDLEGLSSRLH 104

[Close]

BLAST of Chy11G192660 vs. ExPASy TrEMBL
Match: A0A5A7UBA4 (Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60G00390 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 7.9e-05
Identity = 36/93 (38.71%), Postives = 48/93 (51.61%), Query Frame = 0


Query: 14  EDNVILSDILKRKVSTTVSPQKVTLTNKCKKPFISSLSNADDLYVALFGTSSTPRHAPSM 73
           EDNV+LS +LKRK +      K     + KKP  +  +N ++LY  LFGT  +   APS 
Sbjct: 111 EDNVVLSHVLKRKATAIAPCAKGDTPERPKKPKTTRPTNVEELYEKLFGTPISSHEAPSS 170

Query: 74  GSVPSSSRPGSSASKKLPKTTIEDLFTEFTKDP 107
           G  PS S   SS        TI++LF +F   P
Sbjct: 171 GKHPSKSTLSSSKIPPTTDETIDNLFAKFFHAP 203

[Close]

BLAST of Chy11G192660 vs. ExPASy TrEMBL
Match: A0A5D3BFA1 (Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold234G00410 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 7.9e-05
Identity = 36/93 (38.71%), Postives = 48/93 (51.61%), Query Frame = 0


Query: 14  EDNVILSDILKRKVSTTVSPQKVTLTNKCKKPFISSLSNADDLYVALFGTSSTPRHAPSM 73
           EDNV+LS +LKRK +      K     + KKP  +  +N ++LY  LFGT  +   APS 
Sbjct: 111 EDNVVLSHVLKRKATAIAPCAKGDTPERPKKPKTTRPTNVEELYEKLFGTPISSHEAPSS 170

Query: 74  GSVPSSSRPGSSASKKLPKTTIEDLFTEFTKDP 107
           G  PS S   SS        TI++LF +F   P
Sbjct: 171 GKHPSKSTLSSSKIPPTTDETIDNLFAKFFHAP 203

[Close]

BLAST of Chy11G192660 vs. NCBI nr
Match: TYJ97943.1 (flocculation protein FLO11-like [Cucumis melo var. makuwa])

HSP 1 Score: 58.2 bits (139), Expect = 5.18e-07
Identity = 39/96 (40.62%), Postives = 52/96 (54.17%), Query Frame = 0


Query: 14  EDNVILSDILKRKVSTTVSPQKVTLTNKCKKPFISSLSNADDLYVALFGTSSTPRHAPSM 73
           EDNV+LS +LKRK +      K     + KKP  +  +N ++LY  LFGT  +   APS 
Sbjct: 111 EDNVVLSHVLKRKATAIAPCAKGDTPERPKKPKTTRPTNVEELYEKLFGTPISSHEAPSS 170

Query: 74  GSVPSSSRPGSSASKKLPKTT---IEDLFTEFTKDP 106
           G  PS S   SS   K+P TT   I++LF +F   P
Sbjct: 171 GKHPSKSTLSSS---KIPPTTDETIDNLFAKFFHAP 203

[Close]

BLAST of Chy11G192660 vs. NCBI nr
Match: KAA0051667.1 (flocculation protein FLO11-like [Cucumis melo var. makuwa])

HSP 1 Score: 58.2 bits (139), Expect = 5.19e-07
Identity = 39/96 (40.62%), Postives = 52/96 (54.17%), Query Frame = 0


Query: 14  EDNVILSDILKRKVSTTVSPQKVTLTNKCKKPFISSLSNADDLYVALFGTSSTPRHAPSM 73
           EDNV+LS +LKRK +      K     + KKP  +  +N ++LY  LFGT  +   APS 
Sbjct: 111 EDNVVLSHVLKRKATAIAPCAKGDTPERPKKPKTTRPTNVEELYEKLFGTPISSHEAPSS 170

Query: 74  GSVPSSSRPGSSASKKLPKTT---IEDLFTEFTKDP 106
           G  PS S   SS   K+P TT   I++LF +F   P
Sbjct: 171 GKHPSKSTLSSS---KIPPTTDETIDNLFAKFFHAP 203

[Close]

BLAST of Chy11G192660 vs. NCBI nr
Match: KAA0032272.1 (uncharacterized protein E6C27_scaffold219G001100 [Cucumis melo var. makuwa] >TYK17076.1 uncharacterized protein E5676_scaffold1327G00250 [Cucumis melo var. makuwa])

HSP 1 Score: 49.7 bits (117), Expect = 1.37e-04
Identity = 30/72 (41.67%), Postives = 44/72 (61.11%), Query Frame = 0


Query: 14  EDNVILSDILKRKVSTTVSPQKVTLTNKCKKPFISSLSNADDLYVALFGTSSTPRHAPSM 73
           +DNV+LS++LKRK S+     K ++++  KKP +   SNA++LY  LFG SS    A S 
Sbjct: 66  DDNVVLSNVLKRKASSKAPICKESVSDLSKKPGVGRSSNANELYEELFGISSLGHKASSA 125

Query: 74  GSVPSSSRPGSS 85
             V ++  P SS
Sbjct: 126 SKVQNTYAPLSS 137

[Close]

BLAST of Chy11G192660 vs. NCBI nr
Match: KAA0043039.1 (flocculation protein FLO11-like [Cucumis melo var. makuwa])

HSP 1 Score: 50.1 bits (118), Expect = 2.95e-04
Identity = 35/94 (37.23%), Postives = 47/94 (50.00%), Query Frame = 0


Query: 9   SLFEGEDNVILSDILKRKVSTTVSPQKVTLTNKCKKPFISSLSNADDLYVALFGTSSTPR 68
           S    +DNV+LSD++K KVS   S  K  +++  K P +   SNAD LY  LFG      
Sbjct: 58  SKLSNDDNVVLSDVMKWKVSDKASICKEGVSDLSKNPRVRRSSNADKLYKELFGIPPLGH 117

Query: 69  HAPSMGSVPSSSRPGSSASKKLPKTTIEDLFTEF 102
            A       ++S   SS        TI+DLFT+F
Sbjct: 118 KASFTCKAHNTSASSSSKPALSNDETIKDLFTKF 151

The following BLAST results are available for this feature:

BLAST of Chy11G192660 vs.


Match Name	E-value	Identity	Description

BLAST of Chy11G192660 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KYY8	7.6e-16	66.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G256930 PE=4 SV=1	[more]
A0A5A7UBA4	7.9e-05	38.71	Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5D3BFA1	7.9e-05	38.71	Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]

BLAST of Chy11G192660 vs. NCBI nr


Match Name	E-value	Identity	Description
TYJ97943.1	5.18e-07	40.63	flocculation protein FLO11-like [Cucumis melo var. makuwa]	[more]
KAA0051667.1	5.19e-07	40.63	flocculation protein FLO11-like [Cucumis melo var. makuwa]	[more]
KAA0032272.1	1.37e-04	41.67	uncharacterized protein E6C27_scaffold219G001100 [Cucumis melo var. makuwa] >TYK...	[more]
KAA0043039.1	2.95e-04	37.23	flocculation protein FLO11-like [Cucumis melo var. makuwa]	[more]

BLAST of Chy11G192660 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 65..91
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 65..92

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy11G192660.1	Chy11G192660.1	mRNA