Chy11G191370 (gene) Cucumber (hystrix) v1

Overview
NameChy11G191370
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
Descriptiontranscription factor MYB44-like
LocationchrH11: 6241022 .. 6242149 (-)
RNA-Seq ExpressionChy11G191370
SyntenyChy11G191370
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CTGTATCCCAACTCCCCCCTCATCTTAACCGCTTTACAGGAACTCCCGCTAACCAATCCCATAACCTCCTCTCTCACCAACGTCCAACCTTCCACCTCCTCTTCCGGTAACCCTTCCCCTCCCTTTTATATATCCCCCAGCTCCCCACGCCCCCATTATAATCCCTCTCCCAAACCTTCTTTCTTTCCTTTCCTTTCCTTTCTTTGTTTTTTGTTTGCTTCCATGTCCAAACAAATCGATCGAATCAAAGGCCCTTGGAGTCCTGAAGAGGACGATGCCCTTCAAAGATTGGTCCATAAATACGGCCCTCGTAACTGGTCCTTGATTAGCAAATCCATTCCTGGCCGCTCCGGCAAATCTTGTCGTCTCCGATGGTGCAACCAGCTCTCCCCTCAGGTGGAACACCGAGCCTTTACCCCCGAGGAAGACGAGACCATCATTAACGCTCAAGCTCTCTACGGCAACAAATGGGCTACCATCGCCAGGCTCCTATCCGGTCGGACGGATAACGCTATCAAGAACCACTGGAACTCGACCTTGAAACGGAAGTGTTCGTCCATGGCTGACGACACCGGGGGCTGTCATGCCAGTTCCCCACCCTTGAAGAGGTCGCTTTCTGCAGGTCTTTATATGCCTCCCAATAGTCCTTCTGGATCCGATGTTAGCGATTCTGGCTTCTTCCCTGCTGTTGAGTCCTCACATGTGTACCGGCCAGTGGCCAAAACCGGCGCCGTTTTGCCTCCCGGGGAAACGGTGTCGTCTTCGAATGACCCGCCGACATCCTTGTCGTTGTCGCTTCCGGGTGCGGACTCATCGGAGGTTAATTTTGTGGCGAATTCGGTACAGGGGATGGGTGGAGTTTCTGAGAGACGGAGTACGGGGTTGGCGTGTTCGGCAACGGCGAATGGAGAAGAACGAATTTCAGGGGAGAAGGAGGAGAGTAATAGTAATGGATTTGGGATATTTAGCTCGGATTTAATGGCGGTGATGCAAGAGATGATAAGGAAGGAGGTGAGAAACTACATGGGTGGATTAATGGAACAGAACGTTGGTGGGGGTGGCGGAGTTTGTTATCAGCAAGCTGCCGCCGGTGGGTTTAGAAACGTCGTGGTTCAGAGGATTGACTGA

mRNA sequence

CTGTATCCCAACTCCCCCCTCATCTTAACCGCTTTACAGGAACTCCCGCTAACCAATCCCATAACCTCCTCTCTCACCAACGTCCAACCTTCCACCTCCTCTTCCGGTAACCCTTCCCCTCCCTTTTATATATCCCCCAGCTCCCCACGCCCCCATTATAATCCCTCTCCCAAACCTTCTTTCTTTCCTTTCCTTTCCTTTCTTTGTTTTTTGTTTGCTTCCATGTCCAAACAAATCGATCGAATCAAAGGCCCTTGGAGTCCTGAAGAGGACGATGCCCTTCAAAGATTGGTCCATAAATACGGCCCTCGTAACTGGTCCTTGATTAGCAAATCCATTCCTGGCCGCTCCGGCAAATCTTGTCGTCTCCGATGGTGCAACCAGCTCTCCCCTCAGGTGGAACACCGAGCCTTTACCCCCGAGGAAGACGAGACCATCATTAACGCTCAAGCTCTCTACGGCAACAAATGGGCTACCATCGCCAGGCTCCTATCCGGTCGGACGGATAACGCTATCAAGAACCACTGGAACTCGACCTTGAAACGGAAGTGTTCGTCCATGGCTGACGACACCGGGGGCTGTCATGCCAGTTCCCCACCCTTGAAGAGGTCGCTTTCTGCAGGTCTTTATATGCCTCCCAATAGTCCTTCTGGATCCGATGTTAGCGATTCTGGCTTCTTCCCTGCTGTTGAGTCCTCACATGTGTACCGGCCAGTGGCCAAAACCGGCGCCGTTTTGCCTCCCGGGGAAACGGTGTCGTCTTCGAATGACCCGCCGACATCCTTGTCGTTGTCGCTTCCGGGTGCGGACTCATCGGAGGTTAATTTTGTGGCGAATTCGGTACAGGGGATGGGTGGAGTTTCTGAGAGACGGAGTACGGGGTTGGCGTGTTCGGCAACGGCGAATGGAGAAGAACGAATTTCAGGGGAGAAGGAGGAGAGTAATAGTAATGGATTTGGGATATTTAGCTCGGATTTAATGGCGGTGATGCAAGAGATGATAAGGAAGGAGGTGAGAAACTACATGGGTGGATTAATGGAACAGAACGTTGGTGGGGGTGGCGGAGTTTGTTATCAGCAAGCTGCCGCCGGTGGGTTTAGAAACGTCGTGGTTCAGAGGATTGACTGA

Coding sequence (CDS)

CTGTATCCCAACTCCCCCCTCATCTTAACCGCTTTACAGGAACTCCCGCTAACCAATCCCATAACCTCCTCTCTCACCAACGTCCAACCTTCCACCTCCTCTTCCGGTAACCCTTCCCCTCCCTTTTATATATCCCCCAGCTCCCCACGCCCCCATTATAATCCCTCTCCCAAACCTTCTTTCTTTCCTTTCCTTTCCTTTCTTTGTTTTTTGTTTGCTTCCATGTCCAAACAAATCGATCGAATCAAAGGCCCTTGGAGTCCTGAAGAGGACGATGCCCTTCAAAGATTGGTCCATAAATACGGCCCTCGTAACTGGTCCTTGATTAGCAAATCCATTCCTGGCCGCTCCGGCAAATCTTGTCGTCTCCGATGGTGCAACCAGCTCTCCCCTCAGGTGGAACACCGAGCCTTTACCCCCGAGGAAGACGAGACCATCATTAACGCTCAAGCTCTCTACGGCAACAAATGGGCTACCATCGCCAGGCTCCTATCCGGTCGGACGGATAACGCTATCAAGAACCACTGGAACTCGACCTTGAAACGGAAGTGTTCGTCCATGGCTGACGACACCGGGGGCTGTCATGCCAGTTCCCCACCCTTGAAGAGGTCGCTTTCTGCAGGTCTTTATATGCCTCCCAATAGTCCTTCTGGATCCGATGTTAGCGATTCTGGCTTCTTCCCTGCTGTTGAGTCCTCACATGTGTACCGGCCAGTGGCCAAAACCGGCGCCGTTTTGCCTCCCGGGGAAACGGTGTCGTCTTCGAATGACCCGCCGACATCCTTGTCGTTGTCGCTTCCGGGTGCGGACTCATCGGAGGTTAATTTTGTGGCGAATTCGGTACAGGGGATGGGTGGAGTTTCTGAGAGACGGAGTACGGGGTTGGCGTGTTCGGCAACGGCGAATGGAGAAGAACGAATTTCAGGGGAGAAGGAGGAGAGTAATAGTAATGGATTTGGGATATTTAGCTCGGATTTAATGGCGGTGATGCAAGAGATGATAAGGAAGGAGGTGAGAAACTACATGGGTGGATTAATGGAACAGAACGTTGGTGGGGGTGGCGGAGTTTGTTATCAGCAAGCTGCCGCCGGTGGGTTTAGAAACGTCGTGGTTCAGAGGATTGACTGA

Protein sequence

LYPNSPLILTALQELPLTNPITSSLTNVQPSTSSSGNPSPPFYISPSSPRPHYNPSPKPSFFPFLSFLCFLFASMSKQIDRIKGPWSPEEDDALQRLVHKYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDETIINAQALYGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSSMADDTGGCHASSPPLKRSLSAGLYMPPNSPSGSDVSDSGFFPAVESSHVYRPVAKTGAVLPPGETVSSSNDPPTSLSLSLPGADSSEVNFVANSVQGMGGVSERRSTGLACSATANGEERISGEKEESNSNGFGIFSSDLMAVMQEMIRKEVRNYMGGLMEQNVGGGGGVCYQQAAAGGFRNVVVQRID*
Homology
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9FDW17.8e-7557.39Transcription factor MYB44 OS=Arabidopsis thaliana OX=3702 GN=MYB44 PE=1 SV=1[more]
O231601.3e-7452.44Transcription factor MYB73 OS=Arabidopsis thaliana OX=3702 GN=MYB73 PE=1 SV=1[more]
Q9SN122.9e-6950.81Transcription factor MYB77 OS=Arabidopsis thaliana OX=3702 GN=MYB77 PE=1 SV=1[more]
O041926.9e-3947.78Transcription factor MYB25 OS=Arabidopsis thaliana OX=3702 GN=MYB25 PE=2 SV=1[more]
Q425754.5e-3847.50Transcription factor MYB1 OS=Arabidopsis thaliana OX=3702 GN=MYB1 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
A0A5D3BRH51.5e-16195.02Transcription factor MYB44-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A1S3CID01.5e-16195.02transcription factor MYB44-like OS=Cucumis melo OX=3656 GN=LOC103501124 PE=4 SV=... [more]
A0A0A0LTE47.4e-16194.35Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G427310 PE=4 SV=1[more]
A0A6J1L4183.2e-11174.41transcription factor MYB44-like OS=Cucurbita maxima OX=3661 GN=LOC111499704 PE=4... [more]
A0A6J1G8454.1e-11174.07transcription factor MYB44-like OS=Cucurbita moschata OX=3662 GN=LOC111451727 PE... [more]
Match NameE-valueIdentityDescription
XP_008462845.15.32e-20595.02PREDICTED: transcription factor MYB44-like [Cucumis melo] >KAA0066430.1 transcri... [more]
XP_011650034.14.36e-20494.35transcription factor MYB44 [Cucumis sativus] >KGN63306.1 hypothetical protein Cs... [more]
XP_038902237.18.67e-18587.42transcription factor MYB44-like [Benincasa hispida][more]
XP_023007104.18.75e-14074.41transcription factor MYB44-like [Cucurbita maxima][more]
XP_022948026.11.24e-13974.07transcription factor MYB44-like [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
AT5G67300.15.5e-7657.39myb domain protein r1 [more]
AT4G37260.19.5e-7652.44myb domain protein 73 [more]
AT3G50060.12.0e-7050.81myb domain protein 77 [more]
AT2G23290.12.3e-6647.85myb domain protein 70 [more]
AT3G55730.15.8e-4167.29myb domain protein 109 [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001005SANT/Myb domainSMARTSM00717santcoord: 82..131
e-value: 1.4E-17
score: 74.4
coord: 134..182
e-value: 2.7E-14
score: 63.5
IPR001005SANT/Myb domainPROSITEPS50090MYB_LIKEcoord: 78..129
score: 11.880894
IPR001005SANT/Myb domainPROSITEPS50090MYB_LIKEcoord: 130..180
score: 9.140367
IPR001005SANT/Myb domainCDDcd00167SANTcoord: 85..127
e-value: 6.07298E-17
score: 71.8378
IPR001005SANT/Myb domainCDDcd00167SANTcoord: 137..180
e-value: 4.96123E-12
score: 57.9706
NoneNo IPR availableGENE3D1.10.10.60coord: 82..134
e-value: 5.7E-23
score: 82.6
NoneNo IPR availableGENE3D1.10.10.60coord: 136..196
e-value: 2.1E-20
score: 74.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 23..41
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 23..51
NoneNo IPR availablePANTHERPTHR45614MYB PROTEIN-RELATEDcoord: 77..283
NoneNo IPR availablePANTHERPTHR45614:SF107TRANSCRIPTION FACTOR MYB44-LIKEcoord: 77..283
IPR017930Myb domainPFAMPF00249Myb_DNA-bindingcoord: 83..128
e-value: 2.8E-17
score: 62.6
coord: 137..178
e-value: 7.6E-14
score: 51.6
IPR017930Myb domainPROSITEPS51294HTH_MYBcoord: 135..184
score: 23.338888
IPR017930Myb domainPROSITEPS51294HTH_MYBcoord: 78..133
score: 26.113581
IPR009057Homeobox-like domain superfamilySUPERFAMILY46689Homeodomain-likecoord: 80..176

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy11G191370.1Chy11G191370.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006357 regulation of transcription by RNA polymerase II
cellular_component GO:0005634 nucleus
molecular_function GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific
molecular_function GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding