Chy11G191200 (gene) Cucumber (hystrix) v1

Overview
NameChy11G191200
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionBUD13-like protein
LocationchrH11: 5967253 .. 5971214 (-)
RNA-Seq ExpressionChy11G191200
SyntenyChy11G191200
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGTCTGCAAAATCGAAGTCCCTTCAGGAATATCTTAAGCGCTATGAAAGTAACACTGAAGAGGAAAAGAAAAAGAAGAAAAAGAAGAAAACAACAGCAACAAACAAACCCAATGCTCTAGGTGTTCTAGTCGTGGATGAAGATCCTGTTTGGCAGAAACCAATAATTATTGAAGAGGATAATGCTGACAACTCAACGGGTAAGTATCAGTGTGGTTTATGAATGGGTTTATTTTGTCCTATGGAAATTTTGGCTATTTTTTTACATCCTTGTTCTCCTATAATGTAGATGAGGAGCCACAAGTTGATGAAGATGTTGAGGTTAAGAGAATGAGGAGGCTTGAAGAGCTTAAAGCCAAGCGACCGTATAATTCCATAAGTGAAGATGGAAGTGGTTGGGTTTCACTCTCTCCAAATCGTGCAAATTCTAGCATGGTGAACTCTGATATGTCTCCACCTCGTAGAACAAGAGTGCGGAATGATACACCTTCTCCATCTAATGAGTTGAAGCCTCCAGTACCCGGTGAAGAAGGTGAAGATTTTTCACCTCCACGGAGGAGGCCGAGGAAACCTCCTAGCTCACTCGAACATGATGAAAAGCCTACAAATTCTACGTATCCAAGTTCTTCTCCACCTCAAAAGGATAAAGTTTATAGAGATGCACACTTACAAGGAGCTAACTCGGGGCATATAGATTGTGCACAAGAAGATAATGATCTATCACCTCCACGACCACGAAGGAAGCGTTACCATACTCCCTCGCCTGAACCTGATGCAACTTGTACAAGATCTGTTTCTCCTCAATCTGATATTTCACCTCCTCATAGATCTGATAGGACGGCATCTAAAACAAGTTTAGGGGGAAACCACAAGGTTGATCTTTCTCCTCCTCGACGCAGAGCTTCAGACTATGTAGGTGATGAACGTATATCACGTGGATCTGATCTTTCACCCCCAAGGAAACAGAGGAAGGATGTGAGAGGAGATCGATCACTTTTAGATAAGCATTCACGGAATCATGTTACTGATGCTTCACAAGAATCACCAACAGATCTTTCTCCACATAGGAAAAAGCAAAAAGAACTACCAGTTTCAGTCTCCTTTAAACAGACGCGCAAGACTGGTTTGCTTACTCAACAAGAGTTTGGGGAAGAAATGTCTAAAACTAATAAAGAGGACTGGACGAGGTAAGGATGTTGTGATGGCAATAATTTTACATCATTTTTGGTTAGAAGGTTTTGGGTTAAATAATCAATTCTGTCCAATAAACTTTCTTTCATATTTATCTTGTTTTGCTGCCATTTTGATTAGACAATTGGATGGCTGGCTGTGAATGATATAGGATGCTCTATGCGCTATGATCACAATATACAAATGCCCAAAAATAAAAATTGTTTAGGGATGGATGTGTTTTGGGATTTGGGTAACTTTTCTTGTGGTGTTTGTCCATATTTCCGTATTTCCCTTCTTGAAGTTTTACAAGTCAATGCTGTATCTATTTGTGCTTCATGATTGAGATTACAGACTATGGTTTTTTTTTTACCATGGCTTCAAACTTTCATTAAGTGGCTGTCGCAATGATCAGAGAAATATATTCTTTAAAGCCATTTAGCCATTGACCTCCCAGTATTTATTTTGTGTAGAATCACCGTACCCTTCTATGTTTTCCAAGTTCAACGCTGAAAACTTCTGTTGTTATGTAGTAGGGTAGTCAGGAAAAACATCATCCCCCTATTATAAAAACTTAGAAGGCAGCTTGGGTAAAGTTTGAAGACTCCAAAACATCACCAATAATGGCCTTTTAACCCCCCTTATATAAAAAACATAAAGTTTGTCGGTTGAATACAACACAATTACATTTGGTTCTGTTTCAATGTGAATGCCTTTTCTGGTGTAGACCAAGAATGAATTTCATTCAATGAATGACAAATGAAAACAAAGCTCCCTTCAAATAGGCCCAAAGGGAAAGGGCTTTGTCACACCTAACTACCCTAACTAACCTAAACCGCCTTTAAATAGATCCAAATGGTAAAGGTGTTTTCACACCTAAACTAAAATCAAAAGAAAGGAAAAAGTACAAAATCATATTTGATTAAAAACCTCTACGTCATTTTCCATGAATTTATACTATTTCATTTTCTTAAAGAGAAGTATGGTGTGGTGAAATATTTTTATGCTTTGTGTGGTTATGCTTTTCAATTAGTTCTTGACTTCTATATGCATTTACAAATGGTGGAGTAACCATTTTTTTCTTTCTAGGTTTAAAGAGATGAATCCTTCGGCAAGTAGTAATGCGGACCCTGTGTATCGTGATAAGATTAAAGGTAAGGCAATCAACATCTCACCTTTCTTTATCTTCTAGAAAAATTGGCATCATGTTATACAATATACCTCACACTTCAAAACATTACAGGAGATCGCATTTCAAAAGAGGAATTCTTAAAAGCACGCGGGAAAATAGAAGAAAAGGCCAAGGTACTTCAAAGAGTTATGATTTAAATTAAAATTTCACTTTAGACTACTTCTCAGGAGATATAGTTCTTATCAACGCTTTTATCAAATCTCATTGTCGCTGCTTGTGATGCTGGTCTTTTGTCACAGGAGATAAAGTTGGAATGGGGCAAGGGCTTAGCTCAAAAACGAGAAGCAGAAGTTGAACTTATGGAGTTAGAACTCGAGAAAGATAGACCATTTGCACGGTCAAGGTAAAACTGAGCACTCTTAGTTTTTAATTTTAATTGTACTTCTTCTGGAATATCAAATAAAATTGGAAGGATACAAAGATTATTTTACTATTACCCGTGTGCCACTCTATTAGCTACACGTTGAATGGTTTATGAAAGGATACTCTCCAATTTTATTTTTAGTATCTTCTTTATCCTCTTTCCGTTTATTTCCATTTCTAGGATCCATTACTTTCCGAGATTTCCTAATGCCTAGATTGTTGAAAATGGAATCCAAGTGCAATTTTTTCTGTACCTTTATGGGACTACTTAATGTTTGTCAAATTGCTTTCAGGAATGATGCAGAACTTGACTCAATGCTGAGGGATAGATTGAGATGGGGTGATCCTATGGCACACTTGGTGAAGGTAAATTCACTCTAATTCTAAAATGAGCTGAAGTTGAAGAATTGATTGCAGGTTTGATCTTTTGCATTGCACACATTGCAGAAAAGACAATCTGAGATGGCTCTTCCTGATTTAGGAGACAATGAAAAGATGAAGGAATCAGGGTTCATGATTCCTCAGGACATTCCACCTCACAGCTGGCTAAAAAGAGGATTGGATGCTGCACCTAATAGATATGGTATAAGACCTGGAAGACATTGGGATGGGGTTGATCGTAGTAATGGTTAGTTCATTTCTGGTTCATTTCTATATTATTGCTTGGTGTTTGAAATAATCGAAATAGATTAAGTTATAGTTTTTGATCTTGAACTATATCAGTACTTCAAAACTTATGACAGTTTCCAATTTTTGAGTCAGCATCGGGCATTTGCATGTATGTTACAATTTGGTCCCTTCATCTGTAGTTTAGAAACTATTTCAAATTTTCCATCTAAGTAATTCATAAATAGGATAGTGTTCAGACAAACTATATATGTTTTTACAATTAGATCCTTCAACAATATCTATTTCTTTAATGAAGTAAGTACGGATGATTTTGAAATAATGTAAAAATTTAGTGGTATATTTTGAACTTTTACATGTTGGAGGACGTCATTGAAATTAATGAGTTTAGTGTCAAGAAGTCAGCCAGGCCTTTGTAGTATATTCTTTTTAACTGCGATGTGCTTGAAAAACAGCCAAAACAGTTCATATCTTGCATCTATGTTCTTAGGTCTTACATTGTTTAATTGATTTTCCTCGTAGGATTCGAGAAGCAAATGTTCAAGAGGACGAACGAGAAACGAGCTACAGAAAGGGAAGCATATCTTTGGTCTGTGTCTGATATGTAA

mRNA sequence

ATGATGTCTGCAAAATCGAAGTCCCTTCAGGAATATCTTAAGCGCTATGAAAGTAACACTGAAGAGGAAAAGAAAAAGAAGAAAAAGAAGAAAACAACAGCAACAAACAAACCCAATGCTCTAGGTGTTCTAGTCGTGGATGAAGATCCTGTTTGGCAGAAACCAATAATTATTGAAGAGGATAATGCTGACAACTCAACGGATGAGGAGCCACAAGTTGATGAAGATGTTGAGGTTAAGAGAATGAGGAGGCTTGAAGAGCTTAAAGCCAAGCGACCGTATAATTCCATAAGTGAAGATGGAAGTGGTTGGGTTTCACTCTCTCCAAATCGTGCAAATTCTAGCATGGTGAACTCTGATATGTCTCCACCTCGTAGAACAAGAGTGCGGAATGATACACCTTCTCCATCTAATGAGTTGAAGCCTCCAGTACCCGGTGAAGAAGGTGAAGATTTTTCACCTCCACGGAGGAGGCCGAGGAAACCTCCTAGCTCACTCGAACATGATGAAAAGCCTACAAATTCTACGTATCCAAGTTCTTCTCCACCTCAAAAGGATAAAGTTTATAGAGATGCACACTTACAAGGAGCTAACTCGGGGCATATAGATTGTGCACAAGAAGATAATGATCTATCACCTCCACGACCACGAAGGAAGCGTTACCATACTCCCTCGCCTGAACCTGATGCAACTTGTACAAGATCTGTTTCTCCTCAATCTGATATTTCACCTCCTCATAGATCTGATAGGACGGCATCTAAAACAAGTTTAGGGGGAAACCACAAGGTTGATCTTTCTCCTCCTCGACGCAGAGCTTCAGACTATGTAGGTGATGAACGTATATCACGTGGATCTGATCTTTCACCCCCAAGGAAACAGAGGAAGGATGTGAGAGGAGATCGATCACTTTTAGATAAGCATTCACGGAATCATGTTACTGATGCTTCACAAGAATCACCAACAGATCTTTCTCCACATAGGAAAAAGCAAAAAGAACTACCAGTTTCAGTCTCCTTTAAACAGACGCGCAAGACTGGTTTGCTTACTCAACAAGAGTTTGGGGAAGAAATGTCTAAAACTAATAAAGAGGACTGGACGAGGTTTAAAGAGATGAATCCTTCGGCAAGTAGTAATGCGGACCCTGTGTATCGTGATAAGATTAAAGGAGATCGCATTTCAAAAGAGGAATTCTTAAAAGCACGCGGGAAAATAGAAGAAAAGGCCAAGGAGATAAAGTTGGAATGGGGCAAGGGCTTAGCTCAAAAACGAGAAGCAGAAGTTGAACTTATGGAGTTAGAACTCGAGAAAGATAGACCATTTGCACGGTCAAGGAATGATGCAGAACTTGACTCAATGCTGAGGGATAGATTGAGATGGGGTGATCCTATGGCACACTTGGTGAAGAAAAGACAATCTGAGATGGCTCTTCCTGATTTAGGAGACAATGAAAAGATGAAGGAATCAGGGTTCATGATTCCTCAGGACATTCCACCTCACAGCTGGCTAAAAAGAGGATTGGATGCTGCACCTAATAGATATGGTATAAGACCTGGAAGACATTGGGATGGGGTTGATCGTAGTAATGGATTCGAGAAGCAAATGTTCAAGAGGACGAACGAGAAACGAGCTACAGAAAGGGAAGCATATCTTTGGTCTGTGTCTGATATGTAA

Coding sequence (CDS)

ATGATGTCTGCAAAATCGAAGTCCCTTCAGGAATATCTTAAGCGCTATGAAAGTAACACTGAAGAGGAAAAGAAAAAGAAGAAAAAGAAGAAAACAACAGCAACAAACAAACCCAATGCTCTAGGTGTTCTAGTCGTGGATGAAGATCCTGTTTGGCAGAAACCAATAATTATTGAAGAGGATAATGCTGACAACTCAACGGATGAGGAGCCACAAGTTGATGAAGATGTTGAGGTTAAGAGAATGAGGAGGCTTGAAGAGCTTAAAGCCAAGCGACCGTATAATTCCATAAGTGAAGATGGAAGTGGTTGGGTTTCACTCTCTCCAAATCGTGCAAATTCTAGCATGGTGAACTCTGATATGTCTCCACCTCGTAGAACAAGAGTGCGGAATGATACACCTTCTCCATCTAATGAGTTGAAGCCTCCAGTACCCGGTGAAGAAGGTGAAGATTTTTCACCTCCACGGAGGAGGCCGAGGAAACCTCCTAGCTCACTCGAACATGATGAAAAGCCTACAAATTCTACGTATCCAAGTTCTTCTCCACCTCAAAAGGATAAAGTTTATAGAGATGCACACTTACAAGGAGCTAACTCGGGGCATATAGATTGTGCACAAGAAGATAATGATCTATCACCTCCACGACCACGAAGGAAGCGTTACCATACTCCCTCGCCTGAACCTGATGCAACTTGTACAAGATCTGTTTCTCCTCAATCTGATATTTCACCTCCTCATAGATCTGATAGGACGGCATCTAAAACAAGTTTAGGGGGAAACCACAAGGTTGATCTTTCTCCTCCTCGACGCAGAGCTTCAGACTATGTAGGTGATGAACGTATATCACGTGGATCTGATCTTTCACCCCCAAGGAAACAGAGGAAGGATGTGAGAGGAGATCGATCACTTTTAGATAAGCATTCACGGAATCATGTTACTGATGCTTCACAAGAATCACCAACAGATCTTTCTCCACATAGGAAAAAGCAAAAAGAACTACCAGTTTCAGTCTCCTTTAAACAGACGCGCAAGACTGGTTTGCTTACTCAACAAGAGTTTGGGGAAGAAATGTCTAAAACTAATAAAGAGGACTGGACGAGGTTTAAAGAGATGAATCCTTCGGCAAGTAGTAATGCGGACCCTGTGTATCGTGATAAGATTAAAGGAGATCGCATTTCAAAAGAGGAATTCTTAAAAGCACGCGGGAAAATAGAAGAAAAGGCCAAGGAGATAAAGTTGGAATGGGGCAAGGGCTTAGCTCAAAAACGAGAAGCAGAAGTTGAACTTATGGAGTTAGAACTCGAGAAAGATAGACCATTTGCACGGTCAAGGAATGATGCAGAACTTGACTCAATGCTGAGGGATAGATTGAGATGGGGTGATCCTATGGCACACTTGGTGAAGAAAAGACAATCTGAGATGGCTCTTCCTGATTTAGGAGACAATGAAAAGATGAAGGAATCAGGGTTCATGATTCCTCAGGACATTCCACCTCACAGCTGGCTAAAAAGAGGATTGGATGCTGCACCTAATAGATATGGTATAAGACCTGGAAGACATTGGGATGGGGTTGATCGTAGTAATGGATTCGAGAAGCAAATGTTCAAGAGGACGAACGAGAAACGAGCTACAGAAAGGGAAGCATATCTTTGGTCTGTGTCTGATATGTAA

Protein sequence

MMSAKSKSLQEYLKRYESNTEEEKKKKKKKKTTATNKPNALGVLVVDEDPVWQKPIIIEEDNADNSTDEEPQVDEDVEVKRMRRLEELKAKRPYNSISEDGSGWVSLSPNRANSSMVNSDMSPPRRTRVRNDTPSPSNELKPPVPGEEGEDFSPPRRRPRKPPSSLEHDEKPTNSTYPSSSPPQKDKVYRDAHLQGANSGHIDCAQEDNDLSPPRPRRKRYHTPSPEPDATCTRSVSPQSDISPPHRSDRTASKTSLGGNHKVDLSPPRRRASDYVGDERISRGSDLSPPRKQRKDVRGDRSLLDKHSRNHVTDASQESPTDLSPHRKKQKELPVSVSFKQTRKTGLLTQQEFGEEMSKTNKEDWTRFKEMNPSASSNADPVYRDKIKGDRISKEEFLKARGKIEEKAKEIKLEWGKGLAQKREAEVELMELELEKDRPFARSRNDAELDSMLRDRLRWGDPMAHLVKKRQSEMALPDLGDNEKMKESGFMIPQDIPPHSWLKRGLDAAPNRYGIRPGRHWDGVDRSNGFEKQMFKRTNEKRATEREAYLWSVSDM*
Homology
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q8R1491.7e-3332.05BUD13 homolog OS=Mus musculus OX=10090 GN=Bud13 PE=1 SV=1[more]
Q5ZIJ04.2e-3229.08BUD13 homolog OS=Gallus gallus OX=9031 GN=BUD13 PE=2 SV=1[more]
Q4QQU11.6e-3129.96BUD13 homolog OS=Rattus norvegicus OX=10116 GN=Bud13 PE=1 SV=1[more]
Q9BRD03.9e-3028.40BUD13 homolog OS=Homo sapiens OX=9606 GN=BUD13 PE=1 SV=1[more]
O944171.3e-1731.78Pre-mRNA-splicing factor cwf26 OS=Schizosaccharomyces pombe (strain 972 / ATCC 2... [more]
Match NameE-valueIdentityDescription
A0A0A0LTH51.1e-30197.48Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G428990 PE=3 SV=1[more]
A0A1S3CHR81.9e-29896.41BUD13 homolog OS=Cucumis melo OX=3656 GN=LOC103501110 PE=3 SV=1[more]
A0A5A7VKV11.9e-29896.41BUD13-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold602G0... [more]
A0A6J1DPM14.0e-25684.83BUD13 homolog OS=Momordica charantia OX=3673 GN=LOC111022658 PE=3 SV=1[more]
A0A6J1KX657.1e-25383.10BUD13 homolog OS=Cucurbita maxima OX=3661 GN=LOC111498375 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
XP_011650042.10.097.48BUD13 homolog [Cucumis sativus] >XP_031737093.1 BUD13 homolog [Cucumis sativus] ... [more]
XP_008462822.10.096.41PREDICTED: BUD13 homolog [Cucumis melo] >XP_008462824.1 PREDICTED: BUD13 homolog... [more]
XP_038901025.10.088.79BUD13 homolog [Benincasa hispida] >XP_038901026.1 BUD13 homolog [Benincasa hispi... [more]
XP_022155542.10.084.83BUD13 homolog [Momordica charantia][more]
KAG6596913.10.083.66BUD13-like protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7030189.... [more]
Match NameE-valueIdentityDescription
AT1G31870.12.1e-12750.79unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT1G31870.22.1e-12750.79unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 6..33
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 264..313
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 144..168
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 56..347
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 208..225
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 10..28
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 228..260
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..38
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 169..183
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 74..94
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 99..137
NoneNo IPR availablePANTHERPTHR31809BUD13 HOMOLOGcoord: 7..556
IPR018609Bud13PFAMPF09736Bud13coord: 382..539
e-value: 1.2E-37
score: 129.6

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy11G191200.1Chy11G191200.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000398 mRNA splicing, via spliceosome
cellular_component GO:0070274 RES complex
cellular_component GO:0005684 U2-type spliceosomal complex