Chy11G186270 (gene) Cucumber (hystrix) v1

Overview
NameChy11G186270
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionUnknown protein
LocationchrH11: 526032 .. 528107 (-)
RNA-Seq ExpressionChy11G186270
SyntenyChy11G186270
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTGAATTGACTCTGCCACGTGGAGTCTCTAAACCATTAGATTCGGGTACACGTGGCAAGAGAAGGACGGGGATCTCCGACCACGTGGCCTTCTCCTGTGCCTGTCAGCGTCACCTCCAAATCTCTTGTCTTGATCGGGTCTTTGCTTTCAGCTTCCGTGACGGACCAATGGGTAGCTGCCATGGCGACACCACGCTGGGGTCGTGGCGTTGTGGAGAATCGCGTCCCCAAGTGGACACGTGTGTGGTTGGAGAGAAGGGTGCATTGGACATCATGCACGTGACTAGTCGTAGATCGAATTTCAATTACATCAACAGAACCAAATCTTTTTATAATATTTATTCTTTTTATTATTTTTTTCCTTTAAAAAATTGATTTAATGAATTCCATAATATTAATTAATAATAATGTATGAGTTTTCATTAATTAATTAATATTTAAGTGTTCCGTAATCATCTTTTCTTAATAATAATATCTAAATACCAAGTTATTGATTAGGTTAGGTGGTAGTATATGTTGGATATATACCTAATCATTTTCTCACTACCCAAACAAATTAATCTTTAATAATGCATCCTTGCATTTATATTTTATATTTTTTACCGTCTTTTAAGACGTATTTTTAAATGTAGCAAAATGAACTAAAATATTTACAAAATATAACAAAATTTTAGTTTTTATCAATGATAGACACGGATAAATTTCGAGCACTATAAAGTTTCAAGAGAGTCTTTTAGCAAACTAGGTTAATCATTAGACATTGTTTGCTAATGTCTTGCACGATTAACTCCTTCTTTAATCAATTAGAACATGTCTACAAAGTCATTTTGGGAAAGTGGTCCATAGAGGAAAGCAAAATTAAAAATTGTGGACAATATAAGATTTGAAATAGGATTTGGAAATTAATTTCTTAGAAAGACAAGATGAATGTACAAGTGTAACGTGTAACATTAGAGTTGTATAAATATAGAAACAACCACACCACATGCAACATTCTTTGCCTATTTATTACCATTTAGGTTTTAGAAATCATGAGATAATTAATCTTTTACATGTATTTTTAAAATTTATATTTACTATTTATACTCATGAAACAATATTTTACGATTCAAACAGAGTATCGATTGTACACGTGTATATAGTTAGGGTTTTGAGAAGTTTCAACAAAGGAAAAAGGTGCATTTGGCATCATATGCACGACATCAGTCATACATGGAATTTTGTTATAACCAAATCTTAAAGAAACTCTTTTGGTACTTAAACATTTTCTCTTCAACTTTTTCTTTTCTTTAATCAATAAATCAATTCCGTAATCTTTAAGCATGAGTGTGATTAATTAATATTTAATAGTTATCTGAATTCCAAAGAAAAATCTCACACAATTTTCCACAAATGTCTTATTCATTTTGACTTTTATTATTTTTAGAATTAGTTATATGAAATATAAATAAACATGCCTCAATCAATCGAGTTTCTAAAAAACTCTCAATTATAATTCAAACTAAAATAATCTACCCTACGAACACAAACTATTCTAATCAAATTATAATAATCTAAAACTATAATAACTTACTTTTTTCTCTAAACACCCCTCAAGTAATTTGGCTTGATGTATTGGTTCATATATATAAATGGATGTATTTTTGTAACATTTTTTAGGATGGTTTGTAAGAAGGGATCAAACCTTTTTTTTTTCATATTTTACTCAAATATTTTTTTATTAGTCCTCTATTTATTTCCAGTTATATATATATTAGGGTAAGTTTCATGTTTCATTGGCAATTTAGAGACTCTTGGTTGGCCATATATAAGACTGTGTGAACACATAATATATAGTTTACACACAATATATATAAATATAAATAAAGTGGCATGACCTCTTTGTGTGAACATATAATATATAGTTTGCACAGAAATTCTATGATCATTAAAGTTTAGGTTAAGTTGACTACCAAAAGAATGGTGTTTTGAATGTTTGCTTCTTATTATTTATTTATTCAACCTTCTATACCCTACAACCCTATTCAATTGGTGAAGACAGAAGACATTATATACACCTTGATCAAGAGGTAG

mRNA sequence

ATGGGTGAATTGACTCTGCCACGTGGAGTCTCTAAACCATTAGATTCGGGTACACGTGGCAAGAGAAGGACGGGGATCTCCGACCACGTGGCCTTCTCCTGTGCCTGTCAGCGTCACCTCCAAATCTCTTGTCTTGATCGGGTCTTTGCTTTCAGCTTCCGTGACGGACCAATGGGTAGCTGCCATGGCGACACCACGCTGGGGTCGTGGCGTTGTGGAGAATCGCGTCCCCAAGTGGACACGTGTGTGGTTGGAGAGAAGGGTGCATTGGACATCATGCACACAGAAGACATTATATACACCTTGATCAAGAGGTAG

Coding sequence (CDS)

ATGGGTGAATTGACTCTGCCACGTGGAGTCTCTAAACCATTAGATTCGGGTACACGTGGCAAGAGAAGGACGGGGATCTCCGACCACGTGGCCTTCTCCTGTGCCTGTCAGCGTCACCTCCAAATCTCTTGTCTTGATCGGGTCTTTGCTTTCAGCTTCCGTGACGGACCAATGGGTAGCTGCCATGGCGACACCACGCTGGGGTCGTGGCGTTGTGGAGAATCGCGTCCCCAAGTGGACACGTGTGTGGTTGGAGAGAAGGGTGCATTGGACATCATGCACACAGAAGACATTATATACACCTTGATCAAGAGGTAG

Protein sequence

MGELTLPRGVSKPLDSGTRGKRRTGISDHVAFSCACQRHLQISCLDRVFAFSFRDGPMGSCHGDTTLGSWRCGESRPQVDTCVVGEKGALDIMHTEDIIYTLIKR*
Homology
[Close]
BLAST of Chy11G186270 vs. ExPASy TrEMBL
Match: A0A0A0LMZ7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G302240 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 4.5e-07
Identity = 28/42 (66.67%), Postives = 32/42 (76.19%), Query Frame = 0 

Query: 39 HLQISCLDR--VFAFSFRDGPMGSCHGDTTLGSWRCGESRPQ 79
          H+ +S   +  V   S RDGPMGSCHGDTTLGSWRCGESRP+
Sbjct: 55 HVPVSVTSKSLVLIGSLRDGPMGSCHGDTTLGSWRCGESRPK 96

[Close]
BLAST of Chy11G186270 vs. NCBI nr
Match: KGN62157.1 (hypothetical protein Csa_006388 [Cucumis sativus])

HSP 1 Score: 62.0 bits (149), Expect = 9.88e-10
Identity = 28/42 (66.67%), Postives = 32/42 (76.19%), Query Frame = 0 

Query: 39 HLQISCLDR--VFAFSFRDGPMGSCHGDTTLGSWRCGESRPQ 78
          H+ +S   +  V   S RDGPMGSCHGDTTLGSWRCGESRP+
Sbjct: 55 HVPVSVTSKSLVLIGSLRDGPMGSCHGDTTLGSWRCGESRPK 96

The following BLAST results are available for this feature:
BLAST of Chy11G186270 vs.
Match NameE-valueIdentityDescription
BLAST of Chy11G186270 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LMZ74.5e-0766.67Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G302240 PE=4 SV=1[more]
BLAST of Chy11G186270 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN62157.19.88e-1066.67hypothetical protein Csa_006388 [Cucumis sativus][more]
BLAST of Chy11G186270 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..23

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy11G186270.1Chy11G186270.1mRNA