Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGGAAAGAAGGTAGCTTTGGTGGTGGTGGTGGCGGCTGCGATGATATTTTCGAGTTCATTAGCTCAACTCGTCGCGAACTATGATCAACGTCAGTTAGAGGAAAATGAAAATGGCAACGATCTTCTTCGGCTCTTCTCTGACGGTAGCAACGATGGAGGAGTAAACTACAAAAAAGATAATCCGAGAAAAATGATGAAAGCGGCAGCACCACCGCGCCCCTCATGTTTTGGAAATTTCTGCGGTGGTGGACTACTCCCTTGTGCTGAACCCTGCCAATGCAACATTCCAATGGGTGCAGTAAGGGGATATTGTGTTGACTTTTAA
mRNA sequence
ATGGAGGGAAAGAAGGTAGCTTTGGTGGTGGTGGTGGCGGCTGCGATGATATTTTCGAGTTCATTAGCTCAACTCGTCGCGAACTATGATCAACGTCAGTTAGAGGAAAATGAAAATGGCAACGATCTTCTTCGGCTCTTCTCTGACGGTAGCAACGATGGAGGAGTAAACTACAAAAAAGATAATCCGAGAAAAATGATGAAAGCGGCAGCACCACCGCGCCCCTCATGTTTTGGAAATTTCTGCGGTGGTGGACTACTCCCTTGTGCTGAACCCTGCCAATGCAACATTCCAATGGGTGCAGTAAGGGGATATTGTGTTGACTTTTAA
Coding sequence (CDS)
ATGGAGGGAAAGAAGGTAGCTTTGGTGGTGGTGGTGGCGGCTGCGATGATATTTTCGAGTTCATTAGCTCAACTCGTCGCGAACTATGATCAACGTCAGTTAGAGGAAAATGAAAATGGCAACGATCTTCTTCGGCTCTTCTCTGACGGTAGCAACGATGGAGGAGTAAACTACAAAAAAGATAATCCGAGAAAAATGATGAAAGCGGCAGCACCACCGCGCCCCTCATGTTTTGGAAATTTCTGCGGTGGTGGACTACTCCCTTGTGCTGAACCCTGCCAATGCAACATTCCAATGGGTGCAGTAAGGGGATATTGTGTTGACTTTTAA
Protein sequence
MEGKKVALVVVVAAAMIFSSSLAQLVANYDQRQLEENENGNDLLRLFSDGSNDGGVNYKKDNPRKMMKAAAPPRPSCFGNFCGGGLLPCAEPCQCNIPMGAVRGYCVDF
Homology
BLAST of CcUC10G204010 vs. NCBI nr
Match:
KGN59161.1 (hypothetical protein Csa_002402 [Cucumis sativus])
HSP 1 Score: 128.6 bits (322), Expect = 3.2e-26
Identity = 71/113 (62.83%), Postives = 80/113 (70.80%), Query Frame = 0
Query: 1 MEGKKVALVVVVAAAMIFSSSLAQLVANYDQRQLEENENGNDLLRLFSDGSNDGGVNYKK 60
MEGKK+ALVV++ IF+ SLAQ N D+RQ E+NEN + ++LFSDGSND GV YK
Sbjct: 1 MEGKKLALVVLMVMT-IFTCSLAQDALNDDKRQFEKNEN-KEYIQLFSDGSNDKGVRYKD 60
Query: 61 DNPRKMMKAA------APPRPSCFGNFCGGGLLPCAEPCQCNIPMGAVRGYCV 108
D RKMMK A PP P CFGNFCGGGLL C EPC CNIPMGA RG CV
Sbjct: 61 DYSRKMMKEAPTPTPTPPPPPICFGNFCGGGLLDCDEPCFCNIPMGATRGNCV 111
BLAST of CcUC10G204010 vs. NCBI nr
Match:
TYK30388.1 (hypothetical protein E5676_scaffold9509G00010 [Cucumis melo var. makuwa])
HSP 1 Score: 113.6 bits (283), Expect = 1.1e-21
Identity = 67/115 (58.26%), Postives = 81/115 (70.43%), Query Frame = 0
Query: 1 MEGKKVALVVVVAAAMIFSSSLAQLVANYDQRQLEENENGNDLLRLFSDGSND--GGVNY 60
MEGKK+ALVVV+ MIF+ LA + N ++RQ EENEN + ++LFSD SN+ GV Y
Sbjct: 1 MEGKKLALVVVM-TTMIFTCCLAHVALN-EERQFEENEN-KEYIQLFSDDSNNVGEGVKY 60
Query: 61 KKDNPRKMMKAA-----APPRPS-CFGNFCGGGLLPCAEPCQCNIPMGAVRGYCV 108
K D RKM+K A PP PS C+GNFCGGGLLPC EPC C+IP+GA RG CV
Sbjct: 61 KNDYSRKMIKEAPTPTPTPPPPSICYGNFCGGGLLPCDEPCFCSIPLGATRGNCV 112
BLAST of CcUC10G204010 vs. NCBI nr
Match:
KAA0043852.1 (hypothetical protein E6C27_scaffold236G001870 [Cucumis melo var. makuwa])
HSP 1 Score: 102.1 bits (253), Expect = 3.2e-18
Identity = 57/100 (57.00%), Postives = 69/100 (69.00%), Query Frame = 0
Query: 16 MIFSSSLAQLVANYDQRQLEENENGNDLLRLFSDGSND--GGVNYKKDNPRKMMKAA--- 75
MIF+ LA + N ++RQ EENEN + ++LFSD SN+ GV YK D RKM+K A
Sbjct: 4 MIFTCCLAHVALN-EERQFEENEN-KEYIQLFSDDSNNVGEGVKYKNDYSRKMIKEAPTP 63
Query: 76 --APPRPS-CFGNFCGGGLLPCAEPCQCNIPMGAVRGYCV 108
PP PS C+GNFCGGGLLPC EPC C+IP+GA RG CV
Sbjct: 64 TPTPPPPSICYGNFCGGGLLPCDEPCFCSIPLGATRGNCV 101
BLAST of CcUC10G204010 vs. NCBI nr
Match:
KAG6580718.1 (hypothetical protein SDJN03_20720, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 91.3 bits (225), Expect = 5.6e-15
Identity = 58/117 (49.57%), Postives = 69/117 (58.97%), Query Frame = 0
Query: 1 MEGKKVALVVVVAAAMIFSSSLAQLVANYDQRQLEENENGNDLLRLFSDGSNDGGVNYKK 60
MEGKKVALVV++ M F+S+LA+ +L +DGSND + +
Sbjct: 1 MEGKKVALVVLL-VTMAFTSALAR-------------------NQLIADGSNDRAGSDEY 60
Query: 61 DNPRKMMKAA-------AP-PRPSCFGNFCGGGLLPCAEPCQCNIPMGAVRGYCVDF 110
D KM + A AP PRPSCFGNFCGGGLLPC EPC C IPMG+ RG CVDF
Sbjct: 61 DELIKMAEGAPEAAPEPAPSPRPSCFGNFCGGGLLPCDEPCFCFIPMGSQRGSCVDF 97
BLAST of CcUC10G204010 vs. ExPASy TrEMBL
Match:
A0A0A0LGQ3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G778180 PE=4 SV=1)
HSP 1 Score: 128.6 bits (322), Expect = 1.5e-26
Identity = 71/113 (62.83%), Postives = 80/113 (70.80%), Query Frame = 0
Query: 1 MEGKKVALVVVVAAAMIFSSSLAQLVANYDQRQLEENENGNDLLRLFSDGSNDGGVNYKK 60
MEGKK+ALVV++ IF+ SLAQ N D+RQ E+NEN + ++LFSDGSND GV YK
Sbjct: 1 MEGKKLALVVLMVMT-IFTCSLAQDALNDDKRQFEKNEN-KEYIQLFSDGSNDKGVRYKD 60
Query: 61 DNPRKMMKAA------APPRPSCFGNFCGGGLLPCAEPCQCNIPMGAVRGYCV 108
D RKMMK A PP P CFGNFCGGGLL C EPC CNIPMGA RG CV
Sbjct: 61 DYSRKMMKEAPTPTPTPPPPPICFGNFCGGGLLDCDEPCFCNIPMGATRGNCV 111
BLAST of CcUC10G204010 vs. ExPASy TrEMBL
Match:
A0A5D3E3L2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold9509G00010 PE=4 SV=1)
HSP 1 Score: 113.6 bits (283), Expect = 5.1e-22
Identity = 67/115 (58.26%), Postives = 81/115 (70.43%), Query Frame = 0
Query: 1 MEGKKVALVVVVAAAMIFSSSLAQLVANYDQRQLEENENGNDLLRLFSDGSND--GGVNY 60
MEGKK+ALVVV+ MIF+ LA + N ++RQ EENEN + ++LFSD SN+ GV Y
Sbjct: 1 MEGKKLALVVVM-TTMIFTCCLAHVALN-EERQFEENEN-KEYIQLFSDDSNNVGEGVKY 60
Query: 61 KKDNPRKMMKAA-----APPRPS-CFGNFCGGGLLPCAEPCQCNIPMGAVRGYCV 108
K D RKM+K A PP PS C+GNFCGGGLLPC EPC C+IP+GA RG CV
Sbjct: 61 KNDYSRKMIKEAPTPTPTPPPPSICYGNFCGGGLLPCDEPCFCSIPLGATRGNCV 112
BLAST of CcUC10G204010 vs. ExPASy TrEMBL
Match:
A0A5A7TKL8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold236G001870 PE=4 SV=1)
HSP 1 Score: 102.1 bits (253), Expect = 1.5e-18
Identity = 57/100 (57.00%), Postives = 69/100 (69.00%), Query Frame = 0
Query: 16 MIFSSSLAQLVANYDQRQLEENENGNDLLRLFSDGSND--GGVNYKKDNPRKMMKAA--- 75
MIF+ LA + N ++RQ EENEN + ++LFSD SN+ GV YK D RKM+K A
Sbjct: 4 MIFTCCLAHVALN-EERQFEENEN-KEYIQLFSDDSNNVGEGVKYKNDYSRKMIKEAPTP 63
Query: 76 --APPRPS-CFGNFCGGGLLPCAEPCQCNIPMGAVRGYCV 108
PP PS C+GNFCGGGLLPC EPC C+IP+GA RG CV
Sbjct: 64 TPTPPPPSICYGNFCGGGLLPCDEPCFCSIPLGATRGNCV 101
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KGN59161.1 | 3.2e-26 | 62.83 | hypothetical protein Csa_002402 [Cucumis sativus] | [more] |
| TYK30388.1 | 1.1e-21 | 58.26 | hypothetical protein E5676_scaffold9509G00010 [Cucumis melo var. makuwa] | [more] |
| KAA0043852.1 | 3.2e-18 | 57.00 | hypothetical protein E6C27_scaffold236G001870 [Cucumis melo var. makuwa] | [more] |
| KAG6580718.1 | 5.6e-15 | 49.57 | hypothetical protein SDJN03_20720, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0LGQ3 | 1.5e-26 | 62.83 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G778180 PE=4 SV=1 | [more] |
| A0A5D3E3L2 | 5.1e-22 | 58.26 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| A0A5A7TKL8 | 1.5e-18 | 57.00 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
