CcUC10G204010 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC10G204010
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Unknown protein
Location	CicolChr10: 31367905 .. 31368234 (-)
RNA-Seq Expression	CcUC10G204010
Synteny	CcUC10G204010

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGGAAAGAAGGTAGCTTTGGTGGTGGTGGTGGCGGCTGCGATGATATTTTCGAGTTCATTAGCTCAACTCGTCGCGAACTATGATCAACGTCAGTTAGAGGAAAATGAAAATGGCAACGATCTTCTTCGGCTCTTCTCTGACGGTAGCAACGATGGAGGAGTAAACTACAAAAAAGATAATCCGAGAAAAATGATGAAAGCGGCAGCACCACCGCGCCCCTCATGTTTTGGAAATTTCTGCGGTGGTGGACTACTCCCTTGTGCTGAACCCTGCCAATGCAACATTCCAATGGGTGCAGTAAGGGGATATTGTGTTGACTTTTAA

mRNA sequence

ATGGAGGGAAAGAAGGTAGCTTTGGTGGTGGTGGTGGCGGCTGCGATGATATTTTCGAGTTCATTAGCTCAACTCGTCGCGAACTATGATCAACGTCAGTTAGAGGAAAATGAAAATGGCAACGATCTTCTTCGGCTCTTCTCTGACGGTAGCAACGATGGAGGAGTAAACTACAAAAAAGATAATCCGAGAAAAATGATGAAAGCGGCAGCACCACCGCGCCCCTCATGTTTTGGAAATTTCTGCGGTGGTGGACTACTCCCTTGTGCTGAACCCTGCCAATGCAACATTCCAATGGGTGCAGTAAGGGGATATTGTGTTGACTTTTAA

Coding sequence (CDS)

ATGGAGGGAAAGAAGGTAGCTTTGGTGGTGGTGGTGGCGGCTGCGATGATATTTTCGAGTTCATTAGCTCAACTCGTCGCGAACTATGATCAACGTCAGTTAGAGGAAAATGAAAATGGCAACGATCTTCTTCGGCTCTTCTCTGACGGTAGCAACGATGGAGGAGTAAACTACAAAAAAGATAATCCGAGAAAAATGATGAAAGCGGCAGCACCACCGCGCCCCTCATGTTTTGGAAATTTCTGCGGTGGTGGACTACTCCCTTGTGCTGAACCCTGCCAATGCAACATTCCAATGGGTGCAGTAAGGGGATATTGTGTTGACTTTTAA

Protein sequence

MEGKKVALVVVVAAAMIFSSSLAQLVANYDQRQLEENENGNDLLRLFSDGSNDGGVNYKKDNPRKMMKAAAPPRPSCFGNFCGGGLLPCAEPCQCNIPMGAVRGYCVDF

Homology

[Close]

BLAST of CcUC10G204010 vs. NCBI nr
Match: KGN59161.1 (hypothetical protein Csa_002402 [Cucumis sativus])

HSP 1 Score: 128.6 bits (322), Expect = 3.2e-26
Identity = 71/113 (62.83%), Postives = 80/113 (70.80%), Query Frame = 0


Query: 1   MEGKKVALVVVVAAAMIFSSSLAQLVANYDQRQLEENENGNDLLRLFSDGSNDGGVNYKK 60
           MEGKK+ALVV++    IF+ SLAQ   N D+RQ E+NEN  + ++LFSDGSND GV YK 
Sbjct: 1   MEGKKLALVVLMVMT-IFTCSLAQDALNDDKRQFEKNEN-KEYIQLFSDGSNDKGVRYKD 60

Query: 61  DNPRKMMKAA------APPRPSCFGNFCGGGLLPCAEPCQCNIPMGAVRGYCV 108
           D  RKMMK A       PP P CFGNFCGGGLL C EPC CNIPMGA RG CV
Sbjct: 61  DYSRKMMKEAPTPTPTPPPPPICFGNFCGGGLLDCDEPCFCNIPMGATRGNCV 111

[Close]

BLAST of CcUC10G204010 vs. NCBI nr
Match: TYK30388.1 (hypothetical protein E5676_scaffold9509G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 113.6 bits (283), Expect = 1.1e-21
Identity = 67/115 (58.26%), Postives = 81/115 (70.43%), Query Frame = 0


Query: 1   MEGKKVALVVVVAAAMIFSSSLAQLVANYDQRQLEENENGNDLLRLFSDGSND--GGVNY 60
           MEGKK+ALVVV+   MIF+  LA +  N ++RQ EENEN  + ++LFSD SN+   GV Y
Sbjct: 1   MEGKKLALVVVM-TTMIFTCCLAHVALN-EERQFEENEN-KEYIQLFSDDSNNVGEGVKY 60

Query: 61  KKDNPRKMMKAA-----APPRPS-CFGNFCGGGLLPCAEPCQCNIPMGAVRGYCV 108
           K D  RKM+K A      PP PS C+GNFCGGGLLPC EPC C+IP+GA RG CV
Sbjct: 61  KNDYSRKMIKEAPTPTPTPPPPSICYGNFCGGGLLPCDEPCFCSIPLGATRGNCV 112

[Close]

BLAST of CcUC10G204010 vs. NCBI nr
Match: KAA0043852.1 (hypothetical protein E6C27_scaffold236G001870 [Cucumis melo var. makuwa])

HSP 1 Score: 102.1 bits (253), Expect = 3.2e-18
Identity = 57/100 (57.00%), Postives = 69/100 (69.00%), Query Frame = 0


Query: 16  MIFSSSLAQLVANYDQRQLEENENGNDLLRLFSDGSND--GGVNYKKDNPRKMMKAA--- 75
           MIF+  LA +  N ++RQ EENEN  + ++LFSD SN+   GV YK D  RKM+K A   
Sbjct: 4   MIFTCCLAHVALN-EERQFEENEN-KEYIQLFSDDSNNVGEGVKYKNDYSRKMIKEAPTP 63

Query: 76  --APPRPS-CFGNFCGGGLLPCAEPCQCNIPMGAVRGYCV 108
              PP PS C+GNFCGGGLLPC EPC C+IP+GA RG CV
Sbjct: 64  TPTPPPPSICYGNFCGGGLLPCDEPCFCSIPLGATRGNCV 101

[Close]

BLAST of CcUC10G204010 vs. NCBI nr
Match: KAG6580718.1 (hypothetical protein SDJN03_20720, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 91.3 bits (225), Expect = 5.6e-15
Identity = 58/117 (49.57%), Postives = 69/117 (58.97%), Query Frame = 0


Query: 1   MEGKKVALVVVVAAAMIFSSSLAQLVANYDQRQLEENENGNDLLRLFSDGSNDGGVNYKK 60
           MEGKKVALVV++   M F+S+LA+                    +L +DGSND   + + 
Sbjct: 1   MEGKKVALVVLL-VTMAFTSALAR-------------------NQLIADGSNDRAGSDEY 60

Query: 61  DNPRKMMKAA-------AP-PRPSCFGNFCGGGLLPCAEPCQCNIPMGAVRGYCVDF 110
           D   KM + A       AP PRPSCFGNFCGGGLLPC EPC C IPMG+ RG CVDF
Sbjct: 61  DELIKMAEGAPEAAPEPAPSPRPSCFGNFCGGGLLPCDEPCFCFIPMGSQRGSCVDF 97

[Close]

BLAST of CcUC10G204010 vs. ExPASy TrEMBL
Match: A0A0A0LGQ3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G778180 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.5e-26
Identity = 71/113 (62.83%), Postives = 80/113 (70.80%), Query Frame = 0


Query: 1   MEGKKVALVVVVAAAMIFSSSLAQLVANYDQRQLEENENGNDLLRLFSDGSNDGGVNYKK 60
           MEGKK+ALVV++    IF+ SLAQ   N D+RQ E+NEN  + ++LFSDGSND GV YK 
Sbjct: 1   MEGKKLALVVLMVMT-IFTCSLAQDALNDDKRQFEKNEN-KEYIQLFSDGSNDKGVRYKD 60

Query: 61  DNPRKMMKAA------APPRPSCFGNFCGGGLLPCAEPCQCNIPMGAVRGYCV 108
           D  RKMMK A       PP P CFGNFCGGGLL C EPC CNIPMGA RG CV
Sbjct: 61  DYSRKMMKEAPTPTPTPPPPPICFGNFCGGGLLDCDEPCFCNIPMGATRGNCV 111

[Close]

BLAST of CcUC10G204010 vs. ExPASy TrEMBL
Match: A0A5D3E3L2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold9509G00010 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 5.1e-22
Identity = 67/115 (58.26%), Postives = 81/115 (70.43%), Query Frame = 0


Query: 1   MEGKKVALVVVVAAAMIFSSSLAQLVANYDQRQLEENENGNDLLRLFSDGSND--GGVNY 60
           MEGKK+ALVVV+   MIF+  LA +  N ++RQ EENEN  + ++LFSD SN+   GV Y
Sbjct: 1   MEGKKLALVVVM-TTMIFTCCLAHVALN-EERQFEENEN-KEYIQLFSDDSNNVGEGVKY 60

Query: 61  KKDNPRKMMKAA-----APPRPS-CFGNFCGGGLLPCAEPCQCNIPMGAVRGYCV 108
           K D  RKM+K A      PP PS C+GNFCGGGLLPC EPC C+IP+GA RG CV
Sbjct: 61  KNDYSRKMIKEAPTPTPTPPPPSICYGNFCGGGLLPCDEPCFCSIPLGATRGNCV 112

[Close]

BLAST of CcUC10G204010 vs. ExPASy TrEMBL
Match: A0A5A7TKL8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold236G001870 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 1.5e-18
Identity = 57/100 (57.00%), Postives = 69/100 (69.00%), Query Frame = 0


Query: 16  MIFSSSLAQLVANYDQRQLEENENGNDLLRLFSDGSND--GGVNYKKDNPRKMMKAA--- 75
           MIF+  LA +  N ++RQ EENEN  + ++LFSD SN+   GV YK D  RKM+K A   
Sbjct: 4   MIFTCCLAHVALN-EERQFEENEN-KEYIQLFSDDSNNVGEGVKYKNDYSRKMIKEAPTP 63

Query: 76  --APPRPS-CFGNFCGGGLLPCAEPCQCNIPMGAVRGYCV 108
              PP PS C+GNFCGGGLLPC EPC C+IP+GA RG CV
Sbjct: 64  TPTPPPPSICYGNFCGGGLLPCDEPCFCSIPLGATRGNCV 101

The following BLAST results are available for this feature:

BLAST of CcUC10G204010 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN59161.1	3.2e-26	62.83	hypothetical protein Csa_002402 [Cucumis sativus]	[more]
TYK30388.1	1.1e-21	58.26	hypothetical protein E5676_scaffold9509G00010 [Cucumis melo var. makuwa]	[more]
KAA0043852.1	3.2e-18	57.00	hypothetical protein E6C27_scaffold236G001870 [Cucumis melo var. makuwa]	[more]
KAG6580718.1	5.6e-15	49.57	hypothetical protein SDJN03_20720, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CcUC10G204010 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC10G204010 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LGQ3	1.5e-26	62.83	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G778180 PE=4 SV=1	[more]
A0A5D3E3L2	5.1e-22	58.26	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TKL8	1.5e-18	57.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of CcUC10G204010 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC10G204010.1	CcUC10G204010.1	mRNA