CcUC10G198100 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC10G198100
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Unknown protein
Location	CicolChr10: 24837267 .. 24838798 (+)
RNA-Seq Expression	CcUC10G198100
Synteny	CcUC10G198100

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGTGGGTACAAATTTCATCACACAAATGCATACTACTTTTTTTTTTTTATTTTTTTTCTTTTTTATTTAAAAAAATCATTATTATTAGTCAGTGTTTAGTAAATTTTAACTATCAACGTAAAAGAATTATGAAGAATGAAACTTACTTGGTAGGGAGAGGATATTGAGGGAACAAGCTTGTAAGAATATCAACCAATTCTCCACGATGAAGCATACTCTCAACACAAATATATCTTCCTGAAGCGGAAGGAGTTTCATAAACCAAAACATGGGCTTTTGCAACATCCTTGACATCAACATAACCTTGAACTGCATTTACATATGTTTTTGCTGATCCTGTTAAATATTTCATTATATGAACCACACTTGCATTCACACTTTCTTGCAACAAAGGCCCCAATACCAACATTGGATTTACCACCACAAGATCCACCCCTTTTTCTTTTGCCACTTCCCATGCTGCTTGTTCTGCCACTGTCTTTGCATAGCAATACCAATTCTGTGCATAAATTTAATCCCCACACTTCATTATTAGTCATATATATATATATATATATATGGTAATTGTCACGTAAAACACTTTTAAAATTAATAATTAAGTGTATTACAACATTTTAAAAGAATTGCAAACTTTGAGAGCTTGATTTAAATTTTGCTATATATCTACAAATTCTATTGAATTATACTATATATGCTAATACTTTAGATCTGATTGTTATATTTACAATTGCCTACTTATCTAAAGTAGCTAGTATCCCTTGTAAATTAATTATAGAGTTATTATAAGTCAATTACCTTGGTGTTCTTGCAAAACTCAAGGGCACTCCAACAAGACTCATCCACCACCACGTCGGGGCTTCGGTTAGGGTTCATGTAGACGGAGCCAATCGATGACGTGAACACCACTCGTCGAACATTTGCTTCAGCAGCCGCGGTCATGACATTCTTTGTTCCGATTATGGCCTGTTCCACCTTTTCCTGTAAATTGTAATGAGTTATTGTTATTGTTATTTTCCATATAAAATAAAATATAAAGTTCATAATATTAAAAAATCTAGAAAAGTAGAGAGAATGAGGAAGTGGAGTTCTAACGGGATCATCGGTCACCGGAGACGCGGTGTGGAAAACACCATGGCAACCCATAATAGCTGTTTTGAGACTGTCAAAATCAAGAAGATCAGCACTAAACAAAGACAACCGCTCTTTAGCTCCTTCTAAGTTGTTCAAATGACCATTCTTTTGGTCATCTGGTTTTCTAACGGTTCCTCTAACAGTGTAGCCCTTCTCGAGAAGAAGCTTTACAAGCCATGAAGCAATGAAGCCTCCGGCGCCGGTGACACAAACAATTTGGCCGGAAACTGCAGAGGTATCGATCGGCATAGTAGGGGATATGGAAGAAGGATTTATTTTGTTTGGAATAGAAAGAGGAGAGAAAGTTGAAAGAAGAGGATGTAGGTTTAGATGGATGCCCACAAAACGGAGTGGAAGATTGGGTGCTTTTAAAGGGGAGGAAATTAGTCTACCTTAG

mRNA sequence

ATGTGGTGGACGGAGCCAATCGATGACGTGAACACCACTCGTCGAACATTTGCTTCAGCAGCCGCGGTCATGACATTCTTTGTTCCGATTATGGCCTGTTCCACCTTTTCCTGTAAATTAAAAGTAGAGAGAATGAGGAAGTGGAGTTCTAACGGGATCATCGGTCACCGGAGACGCGGTGTGGAAAACACCATGGCAACCCATAATAGCTGTTTTGAGACTCCCTTCTCGAGAAGAAGCTTTACAAGCCATGAAGCAATGAAGCCTCCGGCGCCGGTGACACAAACAATTTGGCCGGAAACTGCAGAGGTATCGATCGGCATAGTAGGGGATATGGAAGAAGGATTTATTTTGTTTGGAATAGAAAGAGGAGAGAAAGTTGAAAGAAGAGGATGTAGGTTTAGATGGATGCCCACAAAACGGAGTGGAAGATTGGGTGCTTTTAAAGGGGAGGAAATTAGTCTACCTTAG

Coding sequence (CDS)

ATGTGGTGGACGGAGCCAATCGATGACGTGAACACCACTCGTCGAACATTTGCTTCAGCAGCCGCGGTCATGACATTCTTTGTTCCGATTATGGCCTGTTCCACCTTTTCCTGTAAATTAAAAGTAGAGAGAATGAGGAAGTGGAGTTCTAACGGGATCATCGGTCACCGGAGACGCGGTGTGGAAAACACCATGGCAACCCATAATAGCTGTTTTGAGACTCCCTTCTCGAGAAGAAGCTTTACAAGCCATGAAGCAATGAAGCCTCCGGCGCCGGTGACACAAACAATTTGGCCGGAAACTGCAGAGGTATCGATCGGCATAGTAGGGGATATGGAAGAAGGATTTATTTTGTTTGGAATAGAAAGAGGAGAGAAAGTTGAAAGAAGAGGATGTAGGTTTAGATGGATGCCCACAAAACGGAGTGGAAGATTGGGTGCTTTTAAAGGGGAGGAAATTAGTCTACCTTAG

Protein sequence

MWWTEPIDDVNTTRRTFASAAAVMTFFVPIMACSTFSCKLKVERMRKWSSNGIIGHRRRGVENTMATHNSCFETPFSRRSFTSHEAMKPPAPVTQTIWPETAEVSIGIVGDMEEGFILFGIERGEKVERRGCRFRWMPTKRSGRLGAFKGEEISLP

Homology

[Close]

BLAST of CcUC10G198100 vs. ExPASy TrEMBL
Match: A0A0E0ESA0 (Uncharacterized protein OS=Oryza meridionalis OX=40149 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 6.7e-07
Identity = 44/98 (44.90%), Postives = 54/98 (55.10%), Query Frame = 0


Query: 4   TEPIDDVNTTRRTF-ASAAAVMTFFVPIMACSTF-SCKLKVERMRKWSSNGIIGHRRRGV 63
           T P+DDVNTTRRT  ASAAA +T+ VP  A ST  SC              I  HR + +
Sbjct: 39  TAPMDDVNTTRRTVPASAAAFITYSVPRTAGSTICSC--------------ITMHRSKRI 98

Query: 64  ENTMATHNSCFETPFSRRSFTSHEAMKPPAPVTQTIWP 100
            +T+   +     P S  S TSH+AM P APVT T+WP
Sbjct: 99  TSTVDAKS--ITQPLSSSSLTSHDAMYPAAPVTHTVWP 120

[Close]

BLAST of CcUC10G198100 vs. ExPASy TrEMBL
Match: A0A0E0CSY3 (Uncharacterized protein OS=Oryza meridionalis OX=40149 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 4.1e-04
Identity = 32/64 (50.00%), Postives = 39/64 (60.94%), Query Frame = 0


Query: 4   TEPIDDVNTTRRTFASAAAVMTFFVPIMACSTFSCKLKVERMRKWSSNGIIGHRRRGVEN 63
           T P DDVNTTRRT  SAAA +TF VP  A  T  C  ++      SS+ +IGHR   VE+
Sbjct: 52  TAPYDDVNTTRRTPMSAAAFITFLVPSTAVGTRFCSKRIS-----SSHLVIGHRGGDVED 110

Query: 64  TMAT 68
            MA+
Sbjct: 112 AMAS 110

The following BLAST results are available for this feature:

BLAST of CcUC10G198100 vs.


Match Name	E-value	Identity	Description

BLAST of CcUC10G198100 vs.


Match Name	E-value	Identity	Description

BLAST of CcUC10G198100 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0E0ESA0	6.7e-07	44.90	Uncharacterized protein OS=Oryza meridionalis OX=40149 PE=4 SV=1	[more]
A0A0E0CSY3	4.1e-04	50.00	Uncharacterized protein OS=Oryza meridionalis OX=40149 PE=4 SV=1	[more]

BLAST of CcUC10G198100 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC10G198100.1	CcUC10G198100.1	mRNA