Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGATGAAGGAGAAAGTGAATGGAAAAATGGGGATGAGAATTATGGTGGGATTGGCACCAATTTTGGTGGTGGTGATTTTGTGGGTAACATCAAAATCATCTCAATTTTTTCAAAGTAGTAATCTTTTTGGAAGTCCTCATTTCATATTCTCAATCTTCAACTCCATCATTCTTCTCATAACTGTGAGAAACCATGATGAGCCACAACCTCATGAACAATTTGAGATAATGGAACTTATTCTTCAATTATCTCTCTATCATAAGCCTCATCAAGACATTGAATTTAGTGCTCGTGAAGATACAAGAGAAGATGACGATGAAAATGCCGAATATGGAAACCGAAATGATCAGAAAGATCAAGACGATAGTGATGAAGATGAAATCGAGCAATGGAATGAGAAAGAAGATGAAGATCATGAAGATAACGAGCGTGACGACGATGAAGATGAGGTCGAGGAGTGGGACGAGAAAGAGGAGGAAGAAGAAGAATTGGAGAAGAGGATTGAAGAATTCATAGCAAAGGTGAACAAGAGATGGAGAGAAGAGAAGTTAAGAGATCATTTTCTTATTCAAATTTGTTCTAGTAACGATGTTAGTAGTACCTGAAATTAAATTATAATTTTCTTTTTCCATTCATAATTTTGTTACTCATTTATATTATATGATCAAGCTTTTTTTTGGTACTAATATTATATGATGAAGCTCTATTTTGCATGATGCCAAAAGAATATATATACATATAAAGATTTCTATTCCTT
mRNA sequence
TGATGAAGGAGAAAGTGAATGGAAAAATGGGGATGAGAATTATGGTGGGATTGGCACCAATTTTGGTGGTGGTGATTTTGTGGGTAACATCAAAATCATCTCAATTTTTTCAAAGTAGTAATCTTTTTGGAAGTCCTCATTTCATATTCTCAATCTTCAACTCCATCATTCTTCTCATAACTGTGAGAAACCATGATGAGCCACAACCTCATGAACAATTTGAGATAATGGAACTTATTCTTCAATTATCTCTCTATCATAAGCCTCATCAAGACATTGAATTTAGTGCTCGTGAAGATACAAGAGAAGATGACGATGAAAATGCCGAATATGGAAACCGAAATGATCAGAAAGATCAAGACGATAGTGATGAAGATGAAATCGAGCAATGGAATGAGAAAGAAGATGAAGATCATGAAGATAACGAGCGTGACGACGATGAAGATGAGGTCGAGGAGTGGGACGAGAAAGAGGAGGAAGAAGAAGAATTGGAGAAGAGGATTGAAGAATTCATAGCAAAGGTGAACAAGAGATGGAGAGAAGAGAAGTTAAGAGATCATTTTCTTATTCAAATTTGTTCTAGTAACGATGTTAGTAGTACCTGAAATTAAATTATAATTTTCTTTTTCCATTCATAATTTTGTTACTCATTTATATTATATGATCAAGCTTTTTTTTGGTACTAATATTATATGATGAAGCTCTATTTTGCATGATGCCAAAAGAATATATATACATATAAAGATTTCTATTCCTT
Coding sequence (CDS)
ATGAAGGAGAAAGTGAATGGAAAAATGGGGATGAGAATTATGGTGGGATTGGCACCAATTTTGGTGGTGGTGATTTTGTGGGTAACATCAAAATCATCTCAATTTTTTCAAAGTAGTAATCTTTTTGGAAGTCCTCATTTCATATTCTCAATCTTCAACTCCATCATTCTTCTCATAACTGTGAGAAACCATGATGAGCCACAACCTCATGAACAATTTGAGATAATGGAACTTATTCTTCAATTATCTCTCTATCATAAGCCTCATCAAGACATTGAATTTAGTGCTCGTGAAGATACAAGAGAAGATGACGATGAAAATGCCGAATATGGAAACCGAAATGATCAGAAAGATCAAGACGATAGTGATGAAGATGAAATCGAGCAATGGAATGAGAAAGAAGATGAAGATCATGAAGATAACGAGCGTGACGACGATGAAGATGAGGTCGAGGAGTGGGACGAGAAAGAGGAGGAAGAAGAAGAATTGGAGAAGAGGATTGAAGAATTCATAGCAAAGGTGAACAAGAGATGGAGAGAAGAGAAGTTAAGAGATCATTTTCTTATTCAAATTTGTTCTAGTAACGATGTTAGTAGTACCTGA
Protein sequence
MKEKVNGKMGMRIMVGLAPILVVVILWVTSKSSQFFQSSNLFGSPHFIFSIFNSIILLITVRNHDEPQPHEQFEIMELILQLSLYHKPHQDIEFSAREDTREDDDENAEYGNRNDQKDQDDSDEDEIEQWNEKEDEDHEDNERDDDEDEVEEWDEKEEEEEELEKRIEEFIAKVNKRWREEKLRDHFLIQICSSNDVSST
Homology
BLAST of CcUC10G189180 vs. NCBI nr
Match:
XP_038876855.1 (glutamic acid-rich protein-like [Benincasa hispida])
HSP 1 Score: 235.0 bits (598), Expect = 5.8e-58
Identity = 154/205 (75.12%), Postives = 171/205 (83.41%), Query Frame = 0
Query: 2 KEKVNGKMGMRIMVGLAPILVVVILWVTSKSSQFFQSSNLFGSPHFIFSIFNSIILLITV 61
+EKVNGKMGMRIMVGL PILVV+ILWVTSKSSQ F SS+LF SPH IFSIFNSIILLIT+
Sbjct: 8 EEKVNGKMGMRIMVGLVPILVVMILWVTSKSSQIFLSSHLFVSPHLIFSIFNSIILLITM 67
Query: 62 RNHDEPQPHEQFEIMELILQLSLYHKPHQDIEFSA---REDTR---EDDDENAEYGNRND 121
RNH EP P EQFEIMEL LQLS YHKPHQDIEFSA REDTR ED+D+N EYGN+N+
Sbjct: 68 RNH-EPHPREQFEIMELTLQLSPYHKPHQDIEFSACDQREDTREEDEDEDKNVEYGNKNE 127
Query: 122 QKDQDDSDEDEIEQWNEKEDEDHEDNERDDDEDEVEEWDEKEEEEEELEKRIEEFIAKVN 181
++D + +DEDEI+Q NEKE ED EDN+RD+ D EEE+EELEKRIEEFIAKVN
Sbjct: 128 KED-EFNDEDEIKQLNEKEHED-EDNDRDEVGD--------EEEDEELEKRIEEFIAKVN 187
Query: 182 KRWREEKLRDHFLIQICSSNDVSST 201
KRWREEKLRDH LIQIC SN+VSST
Sbjct: 188 KRWREEKLRDHLLIQIC-SNNVSST 200
BLAST of CcUC10G189180 vs. NCBI nr
Match:
KAE8650077.1 (hypothetical protein Csa_010314 [Cucumis sativus])
HSP 1 Score: 202.2 bits (513), Expect = 4.2e-48
Identity = 135/199 (67.84%), Postives = 160/199 (80.40%), Query Frame = 0
Query: 9 MGMRIMVGLAPILVVVILWVTSKSSQFFQSSNLFGSPHFIFSIFNSIILLITVRNHDEPQ 68
MGMRIM+GL PILVV++L VTSKSSQFF LFGSPHFIFSIFNSIILLIT+RNH+EPQ
Sbjct: 1 MGMRIMLGLIPILVVMVLLVTSKSSQFFL---LFGSPHFIFSIFNSIILLITMRNHEEPQ 60
Query: 69 PHEQFEIMELILQLSLYH-KP-HQDIEF-SAREDTREDDDE-----NAEYGNRNDQKDQD 128
PHEQF+IMELILQLS YH KP HQD EF +D R +DD+ + +Y NRN+++D+
Sbjct: 61 PHEQFDIMELILQLSPYHNKPHHQDTEFHDDHKDKRVEDDDGDVNTDDQYDNRNEKEDK- 120
Query: 129 DSDEDEIEQWNEKEDEDHEDNERDDDEDEVEEWDEKEEEEEELEKRIEEFIAKVNKRWRE 188
SDEDE+++W+EKE E DD+ DE E WDE EEE+EELE RIEEFIAKVNKRWRE
Sbjct: 121 VSDEDEMKEWDEKEGE-------DDEYDEAEGWDE-EEEDEELEMRIEEFIAKVNKRWRE 180
Query: 189 EKLRDHFLIQICSSNDVSS 200
EKLRDH LIQICS+N+V++
Sbjct: 181 EKLRDHLLIQICSTNNVTN 187
BLAST of CcUC10G189180 vs. NCBI nr
Match:
XP_023005569.1 (acidic leucine-rich nuclear phosphoprotein 32 family member B-like [Cucurbita maxima])
HSP 1 Score: 126.3 bits (316), Expect = 2.9e-25
Identity = 101/196 (51.53%), Postives = 123/196 (62.76%), Query Frame = 0
Query: 9 MGMRIMVGLAPIL-----VVVILWVTSKSSQFFQSSNLFGSPHFIFSIFNSIILLITVRN 68
MGMRIMVGL ++ V+L TSKSSQ F SS L GSPHF+FSIFNSIILLI V
Sbjct: 1 MGMRIMVGLVAVMAAAAAAAVVLLATSKSSQVFLSSKLLGSPHFMFSIFNSIILLIIVTY 60
Query: 69 HDEPQPHEQFEIMELILQLSL---YHKPHQDIEFSAREDTREDDDENAEYGNRNDQKDQD 128
H P + I + L Y+ P Q+IEF A +D + DDE +D
Sbjct: 61 HRPPLHQSPYHIRKGSCYLESYQGYYTPCQNIEFYACDDEHDSDDE---------YEDDS 120
Query: 129 DSDEDEIEQWNEKEDEDHEDNERD-DDEDEVEEWDEKEEEEEELEKRIEEFIAKVNKRWR 188
+++DEIEQ NE E E ++ + D DDED+ E DEK + ++ELEKRIEEFIAKVNKRWR
Sbjct: 121 QNEKDEIEQLNEDETEQCDEEDEDVDDEDDTERCDEK-DNDDELEKRIEEFIAKVNKRWR 180
Query: 189 EEKLRDHFLIQICSSN 196
EEKLRD+ Q CSSN
Sbjct: 181 EEKLRDNLFNQFCSSN 186
BLAST of CcUC10G189180 vs. NCBI nr
Match:
TYK19467.1 (hypothetical protein E5676_scaffold443G001210 [Cucumis melo var. makuwa])
HSP 1 Score: 118.6 bits (296), Expect = 6.1e-23
Identity = 90/152 (59.21%), Postives = 112/152 (73.68%), Query Frame = 0
Query: 61 VRNHDEPQ-PHEQFEIM--ELILQLSLYH-KPHQDIEFSAREDTREDDDENA-------E 120
+RNH+EPQ PHEQFEIM +LIL+LS YH KPH +DTRE+DD++ +
Sbjct: 1 MRNHEEPQRPHEQFEIMDDQLILRLSPYHNKPH-------HQDTREEDDDDGDNQNTDDQ 60
Query: 121 YGNRNDQKDQDDSD-EDEIEQWNEKEDEDHEDNERDDDEDEVEEWDEKEEEEEELEKRIE 180
Y NRN+++D+ SD EDE+++W+EKE E +DE E E WDE EEE+EELEKRIE
Sbjct: 61 YDNRNEKEDKLISDIEDEMKEWDEKEGE--------EDEYEAERWDE-EEEDEELEKRIE 120
Query: 181 EFIAKVNKRWREEKLRDHFLIQICSSNDVSST 201
EFIAKVNKRWREEKLRDH LIQICS+N +S+T
Sbjct: 121 EFIAKVNKRWREEKLRDHLLIQICSTNVISNT 136
BLAST of CcUC10G189180 vs. NCBI nr
Match:
KAG7028360.1 (RNA polymerase II transcription factor B subunit 5, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 112.8 bits (281), Expect = 3.3e-21
Identity = 99/195 (50.77%), Postives = 120/195 (61.54%), Query Frame = 0
Query: 9 MGMRIMVGLAPIL----------VVVILWVTSKSSQFFQSSNLFGSPHFIFSIFNSIILL 68
MGMRIMVGL ++ VV+L VTSKSSQFF S+ L GSPHF+FSIFNSIILL
Sbjct: 1 MGMRIMVGLVAVMAAAAAAAATTTVVVLLVTSKSSQFFLSTKLLGSPHFMFSIFNSIILL 60
Query: 69 ITVRNHDEPQPHEQFEIMELILQLSLYHKPH---QDIEFSAREDTREDDDENAEYGNRND 128
I V H P + I + + YH+ + Q IEF T DDE + N+
Sbjct: 61 IIVTYHPPPPHQSPYHIRKGSCYVESYHEYYTTCQHIEFC----THNGDDEYED----NN 120
Query: 129 QKDQDDSDEDEIEQWNEKEDEDHEDNERDDDEDEVEEWDEKEEEEEELEKRIEEFIAKVN 188
Q ++DD D DE EQ +E EDED DDE+E DE E+ ++ELEKRIEEFIAKVN
Sbjct: 121 QNEKDDRDNDETEQCDE-EDED------VDDENETRRCDE-EDNDDELEKRIEEFIAKVN 179
Query: 189 KRWREEKLRDHFLIQ 191
KRWREEKL+D+ L Q
Sbjct: 181 KRWREEKLQDNLLNQ 179
BLAST of CcUC10G189180 vs. ExPASy TrEMBL
Match:
A0A0A0L728 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G036520 PE=4 SV=1)
HSP 1 Score: 130.2 bits (326), Expect = 9.7e-27
Identity = 92/147 (62.59%), Postives = 114/147 (77.55%), Query Frame = 0
Query: 61 VRNHDEPQPHEQFEIMELILQLSLYH-KP-HQDIEF-SAREDTREDDDE-----NAEYGN 120
+RNH+EPQPHEQF+IMELILQLS YH KP HQD EF +D R +DD+ + +Y N
Sbjct: 1 MRNHEEPQPHEQFDIMELILQLSPYHNKPHHQDTEFHDDHKDKRVEDDDGDVNTDDQYDN 60
Query: 121 RNDQKDQDDSDEDEIEQWNEKEDEDHEDNERDDDEDEVEEWDEKEEEEEELEKRIEEFIA 180
RN+++D+ SDEDE+++W+EKE E DD+ DE E WDE EEE+EELE RIEEFIA
Sbjct: 61 RNEKEDK-VSDEDEMKEWDEKEGE-------DDEYDEAEGWDE-EEEDEELEMRIEEFIA 120
Query: 181 KVNKRWREEKLRDHFLIQICSSNDVSS 200
KVNKRWREEKLRDH LIQICS+N+V++
Sbjct: 121 KVNKRWREEKLRDHLLIQICSTNNVTN 138
BLAST of CcUC10G189180 vs. ExPASy TrEMBL
Match:
A0A6J1KZL9 (acidic leucine-rich nuclear phosphoprotein 32 family member B-like OS=Cucurbita maxima OX=3661 GN=LOC111498513 PE=4 SV=1)
HSP 1 Score: 126.3 bits (316), Expect = 1.4e-25
Identity = 101/196 (51.53%), Postives = 123/196 (62.76%), Query Frame = 0
Query: 9 MGMRIMVGLAPIL-----VVVILWVTSKSSQFFQSSNLFGSPHFIFSIFNSIILLITVRN 68
MGMRIMVGL ++ V+L TSKSSQ F SS L GSPHF+FSIFNSIILLI V
Sbjct: 1 MGMRIMVGLVAVMAAAAAAAVVLLATSKSSQVFLSSKLLGSPHFMFSIFNSIILLIIVTY 60
Query: 69 HDEPQPHEQFEIMELILQLSL---YHKPHQDIEFSAREDTREDDDENAEYGNRNDQKDQD 128
H P + I + L Y+ P Q+IEF A +D + DDE +D
Sbjct: 61 HRPPLHQSPYHIRKGSCYLESYQGYYTPCQNIEFYACDDEHDSDDE---------YEDDS 120
Query: 129 DSDEDEIEQWNEKEDEDHEDNERD-DDEDEVEEWDEKEEEEEELEKRIEEFIAKVNKRWR 188
+++DEIEQ NE E E ++ + D DDED+ E DEK + ++ELEKRIEEFIAKVNKRWR
Sbjct: 121 QNEKDEIEQLNEDETEQCDEEDEDVDDEDDTERCDEK-DNDDELEKRIEEFIAKVNKRWR 180
Query: 189 EEKLRDHFLIQICSSN 196
EEKLRD+ Q CSSN
Sbjct: 181 EEKLRDNLFNQFCSSN 186
BLAST of CcUC10G189180 vs. ExPASy TrEMBL
Match:
A0A5D3D7D0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold443G001210 PE=4 SV=1)
HSP 1 Score: 118.6 bits (296), Expect = 2.9e-23
Identity = 90/152 (59.21%), Postives = 112/152 (73.68%), Query Frame = 0
Query: 61 VRNHDEPQ-PHEQFEIM--ELILQLSLYH-KPHQDIEFSAREDTREDDDENA-------E 120
+RNH+EPQ PHEQFEIM +LIL+LS YH KPH +DTRE+DD++ +
Sbjct: 1 MRNHEEPQRPHEQFEIMDDQLILRLSPYHNKPH-------HQDTREEDDDDGDNQNTDDQ 60
Query: 121 YGNRNDQKDQDDSD-EDEIEQWNEKEDEDHEDNERDDDEDEVEEWDEKEEEEEELEKRIE 180
Y NRN+++D+ SD EDE+++W+EKE E +DE E E WDE EEE+EELEKRIE
Sbjct: 61 YDNRNEKEDKLISDIEDEMKEWDEKEGE--------EDEYEAERWDE-EEEDEELEKRIE 120
Query: 181 EFIAKVNKRWREEKLRDHFLIQICSSNDVSST 201
EFIAKVNKRWREEKLRDH LIQICS+N +S+T
Sbjct: 121 EFIAKVNKRWREEKLRDHLLIQICSTNVISNT 136
BLAST of CcUC10G189180 vs. ExPASy TrEMBL
Match:
A0A6J1E6C0 (nucleolin-like OS=Cucurbita moschata OX=3662 GN=LOC111431005 PE=4 SV=1)
HSP 1 Score: 79.3 bits (194), Expect = 2.0e-11
Identity = 87/176 (49.43%), Postives = 106/176 (60.23%), Query Frame = 0
Query: 14 MVGLAPILVVVI-LWVTSKSSQFFQSSNLFGSPHFIFSIFNSIILLITVRNHDEPQPHEQ 73
MVGL PILVVV+ LWV+S S+LFGSP+ IFSIFN +ILL+TVRNH EP+
Sbjct: 1 MVGLVPILVVVVLLWVSS------NPSHLFGSPYIIFSIFNFMILLVTVRNH-EPR---- 60
Query: 74 FEIMELILQLSLYHKPHQDIEFSAR---EDTREDD-DENAEYGNRNDQKDQDDSDEDEIE 133
+LQ S YHK QD EFSAR ED REDD DENA+ + + ++ D D DEIE
Sbjct: 61 -----CLLQPS-YHKLCQDAEFSAREEDEDKREDDEDENAD----SSENEKIDRDRDEIE 120
Query: 134 QWNEKEDED------HEDNERDDDE----------------DEVEEWDEKEEEEEE 163
Q NE+++ED ED +RD DE DE E WD++EEEEEE
Sbjct: 121 QLNEEDEEDADNDGFDEDEDRDGDEIEQSNEEDEDNDSVDKDETERWDDEEEEEEE 155
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| XP_038876855.1 | 5.8e-58 | 75.12 | glutamic acid-rich protein-like [Benincasa hispida] | [more] |
| KAE8650077.1 | 4.2e-48 | 67.84 | hypothetical protein Csa_010314 [Cucumis sativus] | [more] |
| XP_023005569.1 | 2.9e-25 | 51.53 | acidic leucine-rich nuclear phosphoprotein 32 family member B-like [Cucurbita ma... | [more] |
| TYK19467.1 | 6.1e-23 | 59.21 | hypothetical protein E5676_scaffold443G001210 [Cucumis melo var. makuwa] | [more] |
| KAG7028360.1 | 3.3e-21 | 50.77 | RNA polymerase II transcription factor B subunit 5, partial [Cucurbita argyrospe... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0L728 | 9.7e-27 | 62.59 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G036520 PE=4 SV=1 | [more] |
| A0A6J1KZL9 | 1.4e-25 | 51.53 | acidic leucine-rich nuclear phosphoprotein 32 family member B-like OS=Cucurbita ... | [more] |
| A0A5D3D7D0 | 2.9e-23 | 59.21 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| A0A6J1E6C0 | 2.0e-11 | 49.43 | nucleolin-like OS=Cucurbita moschata OX=3662 GN=LOC111431005 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
