Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGTTGGATATGGTAATGGCAGTAGATATGGAGGTGTAGGAGGACATGGTGATGGTTATGGTAGCAATGGTGGTGGAGGCTATGGAAATCGCTATGGCCCTTCCCTTGGAGATTCAAAATATGGAAGTGGTGGAGGTAGAGGAAGTGGCAATGGTGGAGACTATGGGAATCGGTATGGCCCTTCCCTCGGAGATTCAGGATATGGAAGTGGTGGAGGTAGAGGAAGTGGCAATGGCAATGGCTATGAAGATTCTGGTGGATATGGAGCACGTGACAATGGGTATGGGAGTGGTGGAGAAGTTGGTGGTGGCTATAGTGGTGGTAGTGGAAGTGGTGGTTATGGTAATGGAGGTGTTCATGGAGGAGAATATGATAATAACAAAGGAAGTGGAGAAGAAGGAGGCTATGATGGTAGATATGCAGTCAAAAACTCTATCTCAAAGGAGAATTGA
mRNA sequence
ATGGATAGATATGGAGGTGTAGGAGGACATGGTGATGGTTATGGTAGCAATGGTGGTGGAGGCTATGGAAATCGCTATGGCCCTTCCCTTGGAGATTCAAAATATGGAAGTGGTGGAGGTAGAGGAAGTGGCAATGGTGGAGACTATGGGAATCGGTATGGCCCTTCCCTCGGAGATTCAGGATATGGAAGTGGTGGAGGTAGAGGAAGTGGCAATGGCAATGGCTATGAAGATTCTGGTGGATATGGAGCACGTGACAATGGGTATGGGAGTGGTGGAGAAGTTGGTGGTGGCTATAGTGGTGGTAGTGGAAGTGGTGGTTATGGTAATGGAGGTGTTCATGGAGGAGAATATGATAATAACAAAGGAAGTGGAGAAGAAGGAGGCTATGATGGTAGATATGCAGTCAAAAACTCTATCTCAAAGGAGAATTGA
Coding sequence (CDS)
ATGGATAGATATGGAGGTGTAGGAGGACATGGTGATGGTTATGGTAGCAATGGTGGTGGAGGCTATGGAAATCGCTATGGCCCTTCCCTTGGAGATTCAAAATATGGAAGTGGTGGAGGTAGAGGAAGTGGCAATGGTGGAGACTATGGGAATCGGTATGGCCCTTCCCTCGGAGATTCAGGATATGGAAGTGGTGGAGGTAGAGGAAGTGGCAATGGCAATGGCTATGAAGATTCTGGTGGATATGGAGCACGTGACAATGGGTATGGGAGTGGTGGAGAAGTTGGTGGTGGCTATAGTGGTGGTAGTGGAAGTGGTGGTTATGGTAATGGAGGTGTTCATGGAGGAGAATATGATAATAACAAAGGAAGTGGAGAAGAAGGAGGCTATGATGGTAGATATGCAGTCAAAAACTCTATCTCAAAGGAGAATTGA
Protein sequence
MDRYGGVGGHGDGYGSNGGGGYGNRYGPSLGDSKYGSGGGRGSGNGGDYGNRYGPSLGDSGYGSGGGRGSGNGNGYEDSGGYGARDNGYGSGGEVGGGYSGGSGSGGYGNGGVHGGEYDNNKGSGEEGGYDGRYAVKNSISKEN
Homology
BLAST of CcUC10G187570 vs. NCBI nr
Match:
XP_038903414.1 (glycine-rich cell wall structural protein 1.8-like [Benincasa hispida])
HSP 1 Score: 136.0 bits (341), Expect = 2.6e-28
Identity = 105/153 (68.63%), Postives = 110/153 (71.90%), Query Frame = 0
Query: 4 YGGVGGHGDGYGSNGGGGYGNRYGPSLGDS--KYGSGG----------GRGSGNGGDYGN 63
Y V GH DGYGSNGG G YG G+ YG+GG G GS GG YGN
Sbjct: 109 YKDVVGHDDGYGSNGGRGRDYGYGGQNGNRGVGYGNGGGYGSVGEHGDGYGSNGGGGYGN 168
Query: 64 RYGPSLGDSGYGSGGGRGSGNGNGYEDSGGYGARDNGYGSGGEVGGGYSGGSGSGGYGNG 123
YGPSL S YG+GGGRGS GNGY DS GYGARDNGYGSGG GGGY GG+GS GYGNG
Sbjct: 169 GYGPSLRGSTYGNGGGRGS--GNGYGDSHGYGARDNGYGSGGGAGGGYGGGNGSAGYGNG 228
Query: 124 GVHGGEYDNNKGSGEEGGYDGRYAVKNSISKEN 145
GVH GEYDNNKGSGEEGGYDGRYA+KNSISKEN
Sbjct: 229 GVHRGEYDNNKGSGEEGGYDGRYALKNSISKEN 259
BLAST of CcUC10G187570 vs. NCBI nr
Match:
XP_038903641.1 (glycine-rich cell wall structural protein 2-like [Benincasa hispida])
HSP 1 Score: 129.4 bits (324), Expect = 2.5e-26
Identity = 101/148 (68.24%), Postives = 111/148 (75.00%), Query Frame = 0
Query: 4 YGGVGGHGDGYGSNGGGGYGNRYGPSLGDSKYGSGGG--RGSGNGGDYGNRYGPSLGDSG 63
YGGVGGHGDGYGSNGGGGY RYGPSLG S YG+G G + +G YG++ GP +
Sbjct: 108 YGGVGGHGDGYGSNGGGGY--RYGPSLGGSGYGNGNGYDQRRDHGVGYGSKGGPE-SSNA 167
Query: 64 YGSGGGRGSGNGNGYEDSGGYGARDNGYGSGGEVGGGY-----SGGSGSGGYGNGGVHGG 123
YG G G+ NGY DS GYGARDNGYGSGG VGGGY G SGSGGYGNGGVHGG
Sbjct: 168 YGDSRGYGA-RDNGYGDSRGYGARDNGYGSGGGVGGGYGVGGHGGSSGSGGYGNGGVHGG 227
Query: 124 EYDNNKGSGEEGGYDGRYAVKNSISKEN 145
EYDN+KGSGEEGGYDG YA+KNSIS +N
Sbjct: 228 EYDNSKGSGEEGGYDGGYALKNSISNKN 251
BLAST of CcUC10G187570 vs. NCBI nr
Match:
XP_008449165.1 (PREDICTED: glycine-rich cell wall structural protein 1.8-like [Cucumis melo] >KAA0053039.1 glycine-rich cell wall structural protein 1.8-like [Cucumis melo var. makuwa] >TYK11494.1 glycine-rich cell wall structural protein 1.8-like [Cucumis melo var. makuwa])
HSP 1 Score: 125.2 bits (313), Expect = 4.7e-25
Identity = 94/141 (66.67%), Postives = 102/141 (72.34%), Query Frame = 0
Query: 4 YGGVGGHGDGYGSNGGGGYGNRYGPSLGDSKYGSGGGRGSGNGGDYGNRYGPSLGDSGYG 63
YGGVGGHGDGYG+NGGGGYG+RYGPSLG S YGS GG+GS NG Y +R+ GYG
Sbjct: 107 YGGVGGHGDGYGNNGGGGYGDRYGPSLGGSGYGS-GGKGSDNG--YDDRH-----SHGYG 166
Query: 64 SGGGRGSGNGNGYEDSGGYGARDNGYGSGGEVGGGYSGGSGSGGYGNGGVHGGEYDNNKG 123
G NGY DS G+ RD+GYGSGG V SGGYGNGGVHGGEYDN+KG
Sbjct: 167 -------GRDNGYGDSHGHEGRDSGYGSGGGV---------SGGYGNGGVHGGEYDNSKG 223
Query: 124 SGEEGGYDGRYAVKNSISKEN 145
SGEEGGYDG YAVKNSISK N
Sbjct: 227 SGEEGGYDGGYAVKNSISKGN 223
BLAST of CcUC10G187570 vs. NCBI nr
Match:
XP_008449164.1 (PREDICTED: glycine-rich cell wall structural protein 1.0-like [Cucumis melo] >KAA0053037.1 glycine-rich cell wall structural protein 1.0-like [Cucumis melo var. makuwa] >TYK11492.1 glycine-rich cell wall structural protein 1.0-like [Cucumis melo var. makuwa])
HSP 1 Score: 120.2 bits (300), Expect = 1.5e-23
Identity = 92/141 (65.25%), Postives = 101/141 (71.63%), Query Frame = 0
Query: 4 YGGVGGHGDGYGSNGGGGYGNRYGPSLGDSKYGSGGGRGSGNGGDYGNRYGPSLGDSGYG 63
YGGVGGHGDGYG+N GGGYG+RY PSLG S YG+ GG+GSGNG D +R GYG
Sbjct: 178 YGGVGGHGDGYGNNVGGGYGDRYSPSLGGSGYGN-GGKGSGNGYDDHSR--------GYG 237
Query: 64 SGGGRGSGNGNGYEDSGGYGARDNGYGSGGEVGGGYSGGSGSGGYGNGGVHGGEYDNNKG 123
G+ NGY DS G+G RD+GYGSGG V SGGYGNGGVHGGEYDN+KG
Sbjct: 238 -------GHDNGYGDSHGHGGRDSGYGSGGGV---------SGGYGNGGVHGGEYDNSKG 293
Query: 124 SGEEGGYDGRYAVKNSISKEN 145
SGE GG DG YAVKNSISKEN
Sbjct: 298 SGEGGGNDGGYAVKNSISKEN 293
BLAST of CcUC10G187570 vs. NCBI nr
Match:
KAE8650024.1 (hypothetical protein Csa_011560 [Cucumis sativus])
HSP 1 Score: 119.8 bits (299), Expect = 2.0e-23
Identity = 91/141 (64.54%), Postives = 99/141 (70.21%), Query Frame = 0
Query: 4 YGGVGGHGDGYGSNGGGGYGNRYGPSLGDSKYGSGGGRGSGNGGDYGNRYGPSLGDSGYG 63
YGGVGGHGDGYG+NGGG YG+RYGPSLG S YGS GG+GSGNG D D G
Sbjct: 123 YGGVGGHGDGYGNNGGGSYGDRYGPSLGGSGYGS-GGKGSGNGYD----------DHSRG 182
Query: 64 SGGGRGSGNGNGYEDSGGYGARDNGYGSGGEVGGGYSGGSGSGGYGNGGVHGGEYDNNKG 123
+G N Y DS G+G RD+GYGSGG V +GGYGNGGVHGGEYDN+KG
Sbjct: 183 NG-----ARDNSYGDSHGHGGRDSGYGSGGGV---------TGGYGNGGVHGGEYDNSKG 238
Query: 124 SGEEGGYDGRYAVKNSISKEN 145
SGEEGGYDG YAVKNSISK N
Sbjct: 243 SGEEGGYDGGYAVKNSISKGN 238
BLAST of CcUC10G187570 vs. ExPASy Swiss-Prot
Match:
P10495 (Glycine-rich cell wall structural protein 1.0 OS=Phaseolus vulgaris OX=3885 PE=2 SV=1)
HSP 1 Score: 47.8 bits (112), Expect = 1.2e-04
Identity = 67/135 (49.63%), Postives = 72/135 (53.33%), Query Frame = 0
Query: 4 YGGVGGHGDGYGSNGGGGYGNRYGPSLGDSKYGSGGGRGSGNGGDYGNRYGPSLGDSGYG 63
YGG G +G GYG GGGG G G G + G GGG GSG GG YG G G +G G
Sbjct: 119 YGGGGANGGGYG--GGGGSGGGGGGGAGGAGSGYGGGEGSGAGGGYGGANGGGGGGNGGG 178
Query: 64 SGGGRGSGNGNGYEDSG---GYGARDNGYGSGGEVGGGY-SGGSGSGGYGNGGVHGGEYD 123
GGG G +G G G G GA GYG G GGG SGG G GGYG GG G Y
Sbjct: 179 GGGGSGGAHGGGAAGGGEGAGQGA-GGGYGGGAAGGGGRGSGGGGGGGYGGGGARGSGYG 238
Query: 124 NNKGSGEEGGYDGRY 135
GSGE GG+ G Y
Sbjct: 239 GGGGSGEGGGHGGGY 250
BLAST of CcUC10G187570 vs. ExPASy TrEMBL
Match:
A0A5A7UHU2 (Glycine-rich cell wall structural protein 1.8-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G001580 PE=4 SV=1)
HSP 1 Score: 125.2 bits (313), Expect = 2.3e-25
Identity = 94/141 (66.67%), Postives = 102/141 (72.34%), Query Frame = 0
Query: 4 YGGVGGHGDGYGSNGGGGYGNRYGPSLGDSKYGSGGGRGSGNGGDYGNRYGPSLGDSGYG 63
YGGVGGHGDGYG+NGGGGYG+RYGPSLG S YGS GG+GS NG Y +R+ GYG
Sbjct: 107 YGGVGGHGDGYGNNGGGGYGDRYGPSLGGSGYGS-GGKGSDNG--YDDRH-----SHGYG 166
Query: 64 SGGGRGSGNGNGYEDSGGYGARDNGYGSGGEVGGGYSGGSGSGGYGNGGVHGGEYDNNKG 123
G NGY DS G+ RD+GYGSGG V SGGYGNGGVHGGEYDN+KG
Sbjct: 167 -------GRDNGYGDSHGHEGRDSGYGSGGGV---------SGGYGNGGVHGGEYDNSKG 223
Query: 124 SGEEGGYDGRYAVKNSISKEN 145
SGEEGGYDG YAVKNSISK N
Sbjct: 227 SGEEGGYDGGYAVKNSISKGN 223
BLAST of CcUC10G187570 vs. ExPASy TrEMBL
Match:
A0A1S3BMC4 (glycine-rich cell wall structural protein 1.8-like OS=Cucumis melo OX=3656 GN=LOC103491115 PE=4 SV=1)
HSP 1 Score: 125.2 bits (313), Expect = 2.3e-25
Identity = 94/141 (66.67%), Postives = 102/141 (72.34%), Query Frame = 0
Query: 4 YGGVGGHGDGYGSNGGGGYGNRYGPSLGDSKYGSGGGRGSGNGGDYGNRYGPSLGDSGYG 63
YGGVGGHGDGYG+NGGGGYG+RYGPSLG S YGS GG+GS NG Y +R+ GYG
Sbjct: 107 YGGVGGHGDGYGNNGGGGYGDRYGPSLGGSGYGS-GGKGSDNG--YDDRH-----SHGYG 166
Query: 64 SGGGRGSGNGNGYEDSGGYGARDNGYGSGGEVGGGYSGGSGSGGYGNGGVHGGEYDNNKG 123
G NGY DS G+ RD+GYGSGG V SGGYGNGGVHGGEYDN+KG
Sbjct: 167 -------GRDNGYGDSHGHEGRDSGYGSGGGV---------SGGYGNGGVHGGEYDNSKG 223
Query: 124 SGEEGGYDGRYAVKNSISKEN 145
SGEEGGYDG YAVKNSISK N
Sbjct: 227 SGEEGGYDGGYAVKNSISKGN 223
BLAST of CcUC10G187570 vs. ExPASy TrEMBL
Match:
A0A5A7UEU3 (Glycine-rich cell wall structural protein 1.0-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G001560 PE=4 SV=1)
HSP 1 Score: 120.2 bits (300), Expect = 7.3e-24
Identity = 92/141 (65.25%), Postives = 101/141 (71.63%), Query Frame = 0
Query: 4 YGGVGGHGDGYGSNGGGGYGNRYGPSLGDSKYGSGGGRGSGNGGDYGNRYGPSLGDSGYG 63
YGGVGGHGDGYG+N GGGYG+RY PSLG S YG+ GG+GSGNG D +R GYG
Sbjct: 178 YGGVGGHGDGYGNNVGGGYGDRYSPSLGGSGYGN-GGKGSGNGYDDHSR--------GYG 237
Query: 64 SGGGRGSGNGNGYEDSGGYGARDNGYGSGGEVGGGYSGGSGSGGYGNGGVHGGEYDNNKG 123
G+ NGY DS G+G RD+GYGSGG V SGGYGNGGVHGGEYDN+KG
Sbjct: 238 -------GHDNGYGDSHGHGGRDSGYGSGGGV---------SGGYGNGGVHGGEYDNSKG 293
Query: 124 SGEEGGYDGRYAVKNSISKEN 145
SGE GG DG YAVKNSISKEN
Sbjct: 298 SGEGGGNDGGYAVKNSISKEN 293
BLAST of CcUC10G187570 vs. ExPASy TrEMBL
Match:
A0A1S3BM26 (glycine-rich cell wall structural protein 1.0-like OS=Cucumis melo OX=3656 GN=LOC103491114 PE=4 SV=1)
HSP 1 Score: 120.2 bits (300), Expect = 7.3e-24
Identity = 92/141 (65.25%), Postives = 101/141 (71.63%), Query Frame = 0
Query: 4 YGGVGGHGDGYGSNGGGGYGNRYGPSLGDSKYGSGGGRGSGNGGDYGNRYGPSLGDSGYG 63
YGGVGGHGDGYG+N GGGYG+RY PSLG S YG+ GG+GSGNG D +R GYG
Sbjct: 178 YGGVGGHGDGYGNNVGGGYGDRYSPSLGGSGYGN-GGKGSGNGYDDHSR--------GYG 237
Query: 64 SGGGRGSGNGNGYEDSGGYGARDNGYGSGGEVGGGYSGGSGSGGYGNGGVHGGEYDNNKG 123
G+ NGY DS G+G RD+GYGSGG V SGGYGNGGVHGGEYDN+KG
Sbjct: 238 -------GHDNGYGDSHGHGGRDSGYGSGGGV---------SGGYGNGGVHGGEYDNSKG 293
Query: 124 SGEEGGYDGRYAVKNSISKEN 145
SGE GG DG YAVKNSISKEN
Sbjct: 298 SGEGGGNDGGYAVKNSISKEN 293
BLAST of CcUC10G187570 vs. ExPASy TrEMBL
Match:
A0A0A0L1V3 (Glycine-rich protein-1 OS=Cucumis sativus OX=3659 GN=Csa_3G011070 PE=4 SV=1)
HSP 1 Score: 119.8 bits (299), Expect = 9.5e-24
Identity = 91/141 (64.54%), Postives = 99/141 (70.21%), Query Frame = 0
Query: 4 YGGVGGHGDGYGSNGGGGYGNRYGPSLGDSKYGSGGGRGSGNGGDYGNRYGPSLGDSGYG 63
YGGVGGHGDGYG+NGGG YG+RYGPSLG S YGS GG+GSGNG D D G
Sbjct: 108 YGGVGGHGDGYGNNGGGSYGDRYGPSLGGSGYGS-GGKGSGNGYD----------DHSRG 167
Query: 64 SGGGRGSGNGNGYEDSGGYGARDNGYGSGGEVGGGYSGGSGSGGYGNGGVHGGEYDNNKG 123
+G N Y DS G+G RD+GYGSGG V +GGYGNGGVHGGEYDN+KG
Sbjct: 168 NG-----ARDNSYGDSHGHGGRDSGYGSGGGV---------TGGYGNGGVHGGEYDNSKG 223
Query: 124 SGEEGGYDGRYAVKNSISKEN 145
SGEEGGYDG YAVKNSISK N
Sbjct: 228 SGEEGGYDGGYAVKNSISKGN 223
BLAST of CcUC10G187570 vs. TAIR 10
Match:
AT5G46730.1 (glycine-rich protein )
HSP 1 Score: 45.4 bits (106), Expect = 4.4e-05
Identity = 65/133 (48.87%), Postives = 73/133 (54.89%), Query Frame = 0
Query: 4 YGGVGGHGDGYGSNGGGGYGNRYGPSLGDSKYGSGGGRGSGNGGDYGNRYGPSLGDSGYG 63
YGG G +G G G +GGGG G G + G S YG G G G+G GG +G G GYG
Sbjct: 160 YGG-GAYGGG-GGHGGGGGGGSAGGAHGGSGYGGGEGGGAGGGGSHG-------GAGGYG 219
Query: 64 SGGGRGSGNGNGYEDSGGYGARDNGYGSGGEVGGGYSGGS-------GSGGYGNGGVHGG 123
GGG GSG G Y GG GA GYGSGG GGGY GG+ G GG G GG +GG
Sbjct: 220 GGGGGGSGGGGAY---GGGGAHGGGYGSGGGEGGGYGGGAAGGYGGGGGGGEGGGGSYGG 279
Query: 124 EYDNNKGSGEEGG 130
E+ G G GG
Sbjct: 280 EHGGGSGGGHGGG 280
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| XP_038903414.1 | 2.6e-28 | 68.63 | glycine-rich cell wall structural protein 1.8-like [Benincasa hispida] | [more] |
| XP_038903641.1 | 2.5e-26 | 68.24 | glycine-rich cell wall structural protein 2-like [Benincasa hispida] | [more] |
| XP_008449165.1 | 4.7e-25 | 66.67 | PREDICTED: glycine-rich cell wall structural protein 1.8-like [Cucumis melo] >KA... | [more] |
| XP_008449164.1 | 1.5e-23 | 65.25 | PREDICTED: glycine-rich cell wall structural protein 1.0-like [Cucumis melo] >KA... | [more] |
| KAE8650024.1 | 2.0e-23 | 64.54 | hypothetical protein Csa_011560 [Cucumis sativus] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| P10495 | 1.2e-04 | 49.63 | Glycine-rich cell wall structural protein 1.0 OS=Phaseolus vulgaris OX=3885 PE=2... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7UHU2 | 2.3e-25 | 66.67 | Glycine-rich cell wall structural protein 1.8-like OS=Cucumis melo var. makuwa O... | [more] |
| A0A1S3BMC4 | 2.3e-25 | 66.67 | glycine-rich cell wall structural protein 1.8-like OS=Cucumis melo OX=3656 GN=LO... | [more] |
| A0A5A7UEU3 | 7.3e-24 | 65.25 | Glycine-rich cell wall structural protein 1.0-like OS=Cucumis melo var. makuwa O... | [more] |
| A0A1S3BM26 | 7.3e-24 | 65.25 | glycine-rich cell wall structural protein 1.0-like OS=Cucumis melo OX=3656 GN=LO... | [more] |
| A0A0A0L1V3 | 9.5e-24 | 64.54 | Glycine-rich protein-1 OS=Cucumis sativus OX=3659 GN=Csa_3G011070 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| AT5G46730.1 | 4.4e-05 | 48.87 | glycine-rich protein | [more] |
