CcUC10G187570 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC10G187570
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	glycine-rich cell wall structural protein 1.8-like
Location	CicolChr10: 1570927 .. 1571381 (+)
RNA-Seq Expression	CcUC10G187570
Synteny	CcUC10G187570

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTTGGATATGGTAATGGCAGTAGATATGGAGGTGTAGGAGGACATGGTGATGGTTATGGTAGCAATGGTGGTGGAGGCTATGGAAATCGCTATGGCCCTTCCCTTGGAGATTCAAAATATGGAAGTGGTGGAGGTAGAGGAAGTGGCAATGGTGGAGACTATGGGAATCGGTATGGCCCTTCCCTCGGAGATTCAGGATATGGAAGTGGTGGAGGTAGAGGAAGTGGCAATGGCAATGGCTATGAAGATTCTGGTGGATATGGAGCACGTGACAATGGGTATGGGAGTGGTGGAGAAGTTGGTGGTGGCTATAGTGGTGGTAGTGGAAGTGGTGGTTATGGTAATGGAGGTGTTCATGGAGGAGAATATGATAATAACAAAGGAAGTGGAGAAGAAGGAGGCTATGATGGTAGATATGCAGTCAAAAACTCTATCTCAAAGGAGAATTGA

mRNA sequence

ATGGATAGATATGGAGGTGTAGGAGGACATGGTGATGGTTATGGTAGCAATGGTGGTGGAGGCTATGGAAATCGCTATGGCCCTTCCCTTGGAGATTCAAAATATGGAAGTGGTGGAGGTAGAGGAAGTGGCAATGGTGGAGACTATGGGAATCGGTATGGCCCTTCCCTCGGAGATTCAGGATATGGAAGTGGTGGAGGTAGAGGAAGTGGCAATGGCAATGGCTATGAAGATTCTGGTGGATATGGAGCACGTGACAATGGGTATGGGAGTGGTGGAGAAGTTGGTGGTGGCTATAGTGGTGGTAGTGGAAGTGGTGGTTATGGTAATGGAGGTGTTCATGGAGGAGAATATGATAATAACAAAGGAAGTGGAGAAGAAGGAGGCTATGATGGTAGATATGCAGTCAAAAACTCTATCTCAAAGGAGAATTGA

Coding sequence (CDS)

ATGGATAGATATGGAGGTGTAGGAGGACATGGTGATGGTTATGGTAGCAATGGTGGTGGAGGCTATGGAAATCGCTATGGCCCTTCCCTTGGAGATTCAAAATATGGAAGTGGTGGAGGTAGAGGAAGTGGCAATGGTGGAGACTATGGGAATCGGTATGGCCCTTCCCTCGGAGATTCAGGATATGGAAGTGGTGGAGGTAGAGGAAGTGGCAATGGCAATGGCTATGAAGATTCTGGTGGATATGGAGCACGTGACAATGGGTATGGGAGTGGTGGAGAAGTTGGTGGTGGCTATAGTGGTGGTAGTGGAAGTGGTGGTTATGGTAATGGAGGTGTTCATGGAGGAGAATATGATAATAACAAAGGAAGTGGAGAAGAAGGAGGCTATGATGGTAGATATGCAGTCAAAAACTCTATCTCAAAGGAGAATTGA

Protein sequence

MDRYGGVGGHGDGYGSNGGGGYGNRYGPSLGDSKYGSGGGRGSGNGGDYGNRYGPSLGDSGYGSGGGRGSGNGNGYEDSGGYGARDNGYGSGGEVGGGYSGGSGSGGYGNGGVHGGEYDNNKGSGEEGGYDGRYAVKNSISKEN

Homology

[Close]

BLAST of CcUC10G187570 vs. NCBI nr
Match: XP_038903414.1 (glycine-rich cell wall structural protein 1.8-like [Benincasa hispida])

HSP 1 Score: 136.0 bits (341), Expect = 2.6e-28
Identity = 105/153 (68.63%), Postives = 110/153 (71.90%), Query Frame = 0


Query: 4   YGGVGGHGDGYGSNGGGGYGNRYGPSLGDS--KYGSGG----------GRGSGNGGDYGN 63
           Y  V GH DGYGSNGG G    YG   G+    YG+GG          G GS  GG YGN
Sbjct: 109 YKDVVGHDDGYGSNGGRGRDYGYGGQNGNRGVGYGNGGGYGSVGEHGDGYGSNGGGGYGN 168

Query: 64  RYGPSLGDSGYGSGGGRGSGNGNGYEDSGGYGARDNGYGSGGEVGGGYSGGSGSGGYGNG 123
            YGPSL  S YG+GGGRGS  GNGY DS GYGARDNGYGSGG  GGGY GG+GS GYGNG
Sbjct: 169 GYGPSLRGSTYGNGGGRGS--GNGYGDSHGYGARDNGYGSGGGAGGGYGGGNGSAGYGNG 228

Query: 124 GVHGGEYDNNKGSGEEGGYDGRYAVKNSISKEN 145
           GVH GEYDNNKGSGEEGGYDGRYA+KNSISKEN
Sbjct: 229 GVHRGEYDNNKGSGEEGGYDGRYALKNSISKEN 259

[Close]

BLAST of CcUC10G187570 vs. NCBI nr
Match: XP_038903641.1 (glycine-rich cell wall structural protein 2-like [Benincasa hispida])

HSP 1 Score: 129.4 bits (324), Expect = 2.5e-26
Identity = 101/148 (68.24%), Postives = 111/148 (75.00%), Query Frame = 0


Query: 4   YGGVGGHGDGYGSNGGGGYGNRYGPSLGDSKYGSGGG--RGSGNGGDYGNRYGPSLGDSG 63
           YGGVGGHGDGYGSNGGGGY  RYGPSLG S YG+G G  +   +G  YG++ GP    + 
Sbjct: 108 YGGVGGHGDGYGSNGGGGY--RYGPSLGGSGYGNGNGYDQRRDHGVGYGSKGGPE-SSNA 167

Query: 64  YGSGGGRGSGNGNGYEDSGGYGARDNGYGSGGEVGGGY-----SGGSGSGGYGNGGVHGG 123
           YG   G G+   NGY DS GYGARDNGYGSGG VGGGY      G SGSGGYGNGGVHGG
Sbjct: 168 YGDSRGYGA-RDNGYGDSRGYGARDNGYGSGGGVGGGYGVGGHGGSSGSGGYGNGGVHGG 227

Query: 124 EYDNNKGSGEEGGYDGRYAVKNSISKEN 145
           EYDN+KGSGEEGGYDG YA+KNSIS +N
Sbjct: 228 EYDNSKGSGEEGGYDGGYALKNSISNKN 251

[Close]

BLAST of CcUC10G187570 vs. NCBI nr
Match: XP_008449165.1 (PREDICTED: glycine-rich cell wall structural protein 1.8-like [Cucumis melo] >KAA0053039.1 glycine-rich cell wall structural protein 1.8-like [Cucumis melo var. makuwa] >TYK11494.1 glycine-rich cell wall structural protein 1.8-like [Cucumis melo var. makuwa])

HSP 1 Score: 125.2 bits (313), Expect = 4.7e-25
Identity = 94/141 (66.67%), Postives = 102/141 (72.34%), Query Frame = 0


Query: 4   YGGVGGHGDGYGSNGGGGYGNRYGPSLGDSKYGSGGGRGSGNGGDYGNRYGPSLGDSGYG 63
           YGGVGGHGDGYG+NGGGGYG+RYGPSLG S YGS GG+GS NG  Y +R+       GYG
Sbjct: 107 YGGVGGHGDGYGNNGGGGYGDRYGPSLGGSGYGS-GGKGSDNG--YDDRH-----SHGYG 166

Query: 64  SGGGRGSGNGNGYEDSGGYGARDNGYGSGGEVGGGYSGGSGSGGYGNGGVHGGEYDNNKG 123
                  G  NGY DS G+  RD+GYGSGG V         SGGYGNGGVHGGEYDN+KG
Sbjct: 167 -------GRDNGYGDSHGHEGRDSGYGSGGGV---------SGGYGNGGVHGGEYDNSKG 223

Query: 124 SGEEGGYDGRYAVKNSISKEN 145
           SGEEGGYDG YAVKNSISK N
Sbjct: 227 SGEEGGYDGGYAVKNSISKGN 223

[Close]

BLAST of CcUC10G187570 vs. NCBI nr
Match: XP_008449164.1 (PREDICTED: glycine-rich cell wall structural protein 1.0-like [Cucumis melo] >KAA0053037.1 glycine-rich cell wall structural protein 1.0-like [Cucumis melo var. makuwa] >TYK11492.1 glycine-rich cell wall structural protein 1.0-like [Cucumis melo var. makuwa])

HSP 1 Score: 120.2 bits (300), Expect = 1.5e-23
Identity = 92/141 (65.25%), Postives = 101/141 (71.63%), Query Frame = 0


Query: 4   YGGVGGHGDGYGSNGGGGYGNRYGPSLGDSKYGSGGGRGSGNGGDYGNRYGPSLGDSGYG 63
           YGGVGGHGDGYG+N GGGYG+RY PSLG S YG+ GG+GSGNG D  +R        GYG
Sbjct: 178 YGGVGGHGDGYGNNVGGGYGDRYSPSLGGSGYGN-GGKGSGNGYDDHSR--------GYG 237

Query: 64  SGGGRGSGNGNGYEDSGGYGARDNGYGSGGEVGGGYSGGSGSGGYGNGGVHGGEYDNNKG 123
                  G+ NGY DS G+G RD+GYGSGG V         SGGYGNGGVHGGEYDN+KG
Sbjct: 238 -------GHDNGYGDSHGHGGRDSGYGSGGGV---------SGGYGNGGVHGGEYDNSKG 293

Query: 124 SGEEGGYDGRYAVKNSISKEN 145
           SGE GG DG YAVKNSISKEN
Sbjct: 298 SGEGGGNDGGYAVKNSISKEN 293

[Close]

BLAST of CcUC10G187570 vs. NCBI nr
Match: KAE8650024.1 (hypothetical protein Csa_011560 [Cucumis sativus])

HSP 1 Score: 119.8 bits (299), Expect = 2.0e-23
Identity = 91/141 (64.54%), Postives = 99/141 (70.21%), Query Frame = 0


Query: 4   YGGVGGHGDGYGSNGGGGYGNRYGPSLGDSKYGSGGGRGSGNGGDYGNRYGPSLGDSGYG 63
           YGGVGGHGDGYG+NGGG YG+RYGPSLG S YGS GG+GSGNG D          D   G
Sbjct: 123 YGGVGGHGDGYGNNGGGSYGDRYGPSLGGSGYGS-GGKGSGNGYD----------DHSRG 182

Query: 64  SGGGRGSGNGNGYEDSGGYGARDNGYGSGGEVGGGYSGGSGSGGYGNGGVHGGEYDNNKG 123
           +G        N Y DS G+G RD+GYGSGG V         +GGYGNGGVHGGEYDN+KG
Sbjct: 183 NG-----ARDNSYGDSHGHGGRDSGYGSGGGV---------TGGYGNGGVHGGEYDNSKG 238

Query: 124 SGEEGGYDGRYAVKNSISKEN 145
           SGEEGGYDG YAVKNSISK N
Sbjct: 243 SGEEGGYDGGYAVKNSISKGN 238

[Close]

BLAST of CcUC10G187570 vs. ExPASy Swiss-Prot
Match: P10495 (Glycine-rich cell wall structural protein 1.0 OS=Phaseolus vulgaris OX=3885 PE=2 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 1.2e-04
Identity = 67/135 (49.63%), Postives = 72/135 (53.33%), Query Frame = 0


Query: 4   YGGVGGHGDGYGSNGGGGYGNRYGPSLGDSKYGSGGGRGSGNGGDYGNRYGPSLGDSGYG 63
           YGG G +G GYG  GGGG G   G   G +  G GGG GSG GG YG   G   G +G G
Sbjct: 119 YGGGGANGGGYG--GGGGSGGGGGGGAGGAGSGYGGGEGSGAGGGYGGANGGGGGGNGGG 178

Query: 64  SGGGRGSGNGNGYEDSG---GYGARDNGYGSGGEVGGGY-SGGSGSGGYGNGGVHGGEYD 123
            GGG G  +G G    G   G GA   GYG G   GGG  SGG G GGYG GG  G  Y 
Sbjct: 179 GGGGSGGAHGGGAAGGGEGAGQGA-GGGYGGGAAGGGGRGSGGGGGGGYGGGGARGSGYG 238

Query: 124 NNKGSGEEGGYDGRY 135
              GSGE GG+ G Y
Sbjct: 239 GGGGSGEGGGHGGGY 250

[Close]

BLAST of CcUC10G187570 vs. ExPASy TrEMBL
Match: A0A5A7UHU2 (Glycine-rich cell wall structural protein 1.8-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G001580 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 2.3e-25
Identity = 94/141 (66.67%), Postives = 102/141 (72.34%), Query Frame = 0


Query: 4   YGGVGGHGDGYGSNGGGGYGNRYGPSLGDSKYGSGGGRGSGNGGDYGNRYGPSLGDSGYG 63
           YGGVGGHGDGYG+NGGGGYG+RYGPSLG S YGS GG+GS NG  Y +R+       GYG
Sbjct: 107 YGGVGGHGDGYGNNGGGGYGDRYGPSLGGSGYGS-GGKGSDNG--YDDRH-----SHGYG 166

Query: 64  SGGGRGSGNGNGYEDSGGYGARDNGYGSGGEVGGGYSGGSGSGGYGNGGVHGGEYDNNKG 123
                  G  NGY DS G+  RD+GYGSGG V         SGGYGNGGVHGGEYDN+KG
Sbjct: 167 -------GRDNGYGDSHGHEGRDSGYGSGGGV---------SGGYGNGGVHGGEYDNSKG 223

Query: 124 SGEEGGYDGRYAVKNSISKEN 145
           SGEEGGYDG YAVKNSISK N
Sbjct: 227 SGEEGGYDGGYAVKNSISKGN 223

[Close]

BLAST of CcUC10G187570 vs. ExPASy TrEMBL
Match: A0A1S3BMC4 (glycine-rich cell wall structural protein 1.8-like OS=Cucumis melo OX=3656 GN=LOC103491115 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 2.3e-25
Identity = 94/141 (66.67%), Postives = 102/141 (72.34%), Query Frame = 0


Query: 4   YGGVGGHGDGYGSNGGGGYGNRYGPSLGDSKYGSGGGRGSGNGGDYGNRYGPSLGDSGYG 63
           YGGVGGHGDGYG+NGGGGYG+RYGPSLG S YGS GG+GS NG  Y +R+       GYG
Sbjct: 107 YGGVGGHGDGYGNNGGGGYGDRYGPSLGGSGYGS-GGKGSDNG--YDDRH-----SHGYG 166

Query: 64  SGGGRGSGNGNGYEDSGGYGARDNGYGSGGEVGGGYSGGSGSGGYGNGGVHGGEYDNNKG 123
                  G  NGY DS G+  RD+GYGSGG V         SGGYGNGGVHGGEYDN+KG
Sbjct: 167 -------GRDNGYGDSHGHEGRDSGYGSGGGV---------SGGYGNGGVHGGEYDNSKG 223

Query: 124 SGEEGGYDGRYAVKNSISKEN 145
           SGEEGGYDG YAVKNSISK N
Sbjct: 227 SGEEGGYDGGYAVKNSISKGN 223

[Close]

BLAST of CcUC10G187570 vs. ExPASy TrEMBL
Match: A0A5A7UEU3 (Glycine-rich cell wall structural protein 1.0-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G001560 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 7.3e-24
Identity = 92/141 (65.25%), Postives = 101/141 (71.63%), Query Frame = 0


Query: 4   YGGVGGHGDGYGSNGGGGYGNRYGPSLGDSKYGSGGGRGSGNGGDYGNRYGPSLGDSGYG 63
           YGGVGGHGDGYG+N GGGYG+RY PSLG S YG+ GG+GSGNG D  +R        GYG
Sbjct: 178 YGGVGGHGDGYGNNVGGGYGDRYSPSLGGSGYGN-GGKGSGNGYDDHSR--------GYG 237

Query: 64  SGGGRGSGNGNGYEDSGGYGARDNGYGSGGEVGGGYSGGSGSGGYGNGGVHGGEYDNNKG 123
                  G+ NGY DS G+G RD+GYGSGG V         SGGYGNGGVHGGEYDN+KG
Sbjct: 238 -------GHDNGYGDSHGHGGRDSGYGSGGGV---------SGGYGNGGVHGGEYDNSKG 293

Query: 124 SGEEGGYDGRYAVKNSISKEN 145
           SGE GG DG YAVKNSISKEN
Sbjct: 298 SGEGGGNDGGYAVKNSISKEN 293

[Close]

BLAST of CcUC10G187570 vs. ExPASy TrEMBL
Match: A0A1S3BM26 (glycine-rich cell wall structural protein 1.0-like OS=Cucumis melo OX=3656 GN=LOC103491114 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 7.3e-24
Identity = 92/141 (65.25%), Postives = 101/141 (71.63%), Query Frame = 0


Query: 4   YGGVGGHGDGYGSNGGGGYGNRYGPSLGDSKYGSGGGRGSGNGGDYGNRYGPSLGDSGYG 63
           YGGVGGHGDGYG+N GGGYG+RY PSLG S YG+ GG+GSGNG D  +R        GYG
Sbjct: 178 YGGVGGHGDGYGNNVGGGYGDRYSPSLGGSGYGN-GGKGSGNGYDDHSR--------GYG 237

Query: 64  SGGGRGSGNGNGYEDSGGYGARDNGYGSGGEVGGGYSGGSGSGGYGNGGVHGGEYDNNKG 123
                  G+ NGY DS G+G RD+GYGSGG V         SGGYGNGGVHGGEYDN+KG
Sbjct: 238 -------GHDNGYGDSHGHGGRDSGYGSGGGV---------SGGYGNGGVHGGEYDNSKG 293

Query: 124 SGEEGGYDGRYAVKNSISKEN 145
           SGE GG DG YAVKNSISKEN
Sbjct: 298 SGEGGGNDGGYAVKNSISKEN 293

[Close]

BLAST of CcUC10G187570 vs. ExPASy TrEMBL
Match: A0A0A0L1V3 (Glycine-rich protein-1 OS=Cucumis sativus OX=3659 GN=Csa_3G011070 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 9.5e-24
Identity = 91/141 (64.54%), Postives = 99/141 (70.21%), Query Frame = 0


Query: 4   YGGVGGHGDGYGSNGGGGYGNRYGPSLGDSKYGSGGGRGSGNGGDYGNRYGPSLGDSGYG 63
           YGGVGGHGDGYG+NGGG YG+RYGPSLG S YGS GG+GSGNG D          D   G
Sbjct: 108 YGGVGGHGDGYGNNGGGSYGDRYGPSLGGSGYGS-GGKGSGNGYD----------DHSRG 167

Query: 64  SGGGRGSGNGNGYEDSGGYGARDNGYGSGGEVGGGYSGGSGSGGYGNGGVHGGEYDNNKG 123
           +G        N Y DS G+G RD+GYGSGG V         +GGYGNGGVHGGEYDN+KG
Sbjct: 168 NG-----ARDNSYGDSHGHGGRDSGYGSGGGV---------TGGYGNGGVHGGEYDNSKG 223

Query: 124 SGEEGGYDGRYAVKNSISKEN 145
           SGEEGGYDG YAVKNSISK N
Sbjct: 228 SGEEGGYDGGYAVKNSISKGN 223

[Close]

BLAST of CcUC10G187570 vs. TAIR 10
Match: AT5G46730.1 (glycine-rich protein )

HSP 1 Score: 45.4 bits (106), Expect = 4.4e-05
Identity = 65/133 (48.87%), Postives = 73/133 (54.89%), Query Frame = 0


Query: 4   YGGVGGHGDGYGSNGGGGYGNRYGPSLGDSKYGSGGGRGSGNGGDYGNRYGPSLGDSGYG 63
           YGG G +G G G +GGGG G   G + G S YG G G G+G GG +G       G  GYG
Sbjct: 160 YGG-GAYGGG-GGHGGGGGGGSAGGAHGGSGYGGGEGGGAGGGGSHG-------GAGGYG 219

Query: 64  SGGGRGSGNGNGYEDSGGYGARDNGYGSGGEVGGGYSGGS-------GSGGYGNGGVHGG 123
            GGG GSG G  Y   GG GA   GYGSGG  GGGY GG+       G GG G GG +GG
Sbjct: 220 GGGGGGSGGGGAY---GGGGAHGGGYGSGGGEGGGYGGGAAGGYGGGGGGGEGGGGSYGG 279

Query: 124 EYDNNKGSGEEGG 130
           E+    G G  GG
Sbjct: 280 EHGGGSGGGHGGG 280

The following BLAST results are available for this feature:

BLAST of CcUC10G187570 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038903414.1	2.6e-28	68.63	glycine-rich cell wall structural protein 1.8-like [Benincasa hispida]	[more]
XP_038903641.1	2.5e-26	68.24	glycine-rich cell wall structural protein 2-like [Benincasa hispida]	[more]
XP_008449165.1	4.7e-25	66.67	PREDICTED: glycine-rich cell wall structural protein 1.8-like [Cucumis melo] >KA...	[more]
XP_008449164.1	1.5e-23	65.25	PREDICTED: glycine-rich cell wall structural protein 1.0-like [Cucumis melo] >KA...	[more]
KAE8650024.1	2.0e-23	64.54	hypothetical protein Csa_011560 [Cucumis sativus]	[more]

BLAST of CcUC10G187570 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10495	1.2e-04	49.63	Glycine-rich cell wall structural protein 1.0 OS=Phaseolus vulgaris OX=3885 PE=2...	[more]

BLAST of CcUC10G187570 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UHU2	2.3e-25	66.67	Glycine-rich cell wall structural protein 1.8-like OS=Cucumis melo var. makuwa O...	[more]
A0A1S3BMC4	2.3e-25	66.67	glycine-rich cell wall structural protein 1.8-like OS=Cucumis melo OX=3656 GN=LO...	[more]
A0A5A7UEU3	7.3e-24	65.25	Glycine-rich cell wall structural protein 1.0-like OS=Cucumis melo var. makuwa O...	[more]
A0A1S3BM26	7.3e-24	65.25	glycine-rich cell wall structural protein 1.0-like OS=Cucumis melo OX=3656 GN=LO...	[more]
A0A0A0L1V3	9.5e-24	64.54	Glycine-rich protein-1 OS=Cucumis sativus OX=3659 GN=Csa_3G011070 PE=4 SV=1	[more]

BLAST of CcUC10G187570 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G46730.1	4.4e-05	48.87	glycine-rich protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..144

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC10G187570.1	CcUC10G187570.1	mRNA