CcUC08G154020 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC08G154020
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	leucine-rich repeat extensin-like protein 3
Location	CicolChr08: 22432859 .. 22433422 (+)
RNA-Seq Expression	CcUC08G154020
Synteny	CcUC08G154020

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAACATTTCTCCGAAACCCTTCATTTCTCTTCCCTTTTCATTCTTCTCATCTTCCACCTCACCGGAGCTACGGCAGCTGTGGCCGAAGACGACCGTGTGGTCGAGGTGGTTCCTCCGGTTAGCCTTCTTTGTATTAGCGAATGTTCAACTTGCCCCACCATATGTGCGCCGCCGCCGCCGCCGCCCACGGTGGTGCCCAAGTCACCGCCACCGGTGCCCCATGTGCCACCACTGGCTTACTTCCCACTCAATTCACCCCCACCTCGACAAACCCCATCTCCACCGCCGCCGTCGCCGTCGCCACCACCGCCGCCGGCGGTGGCTTCATCTCATTCCCCGCCGCCTCCCGCATTCAAATATTATTTCAATTTGCCACCACCGCCGCCGGTGCTGATTCCAGTACCTGTGCCGCCGACCGGCACGGCGGCGCCTCATGGAAATACGAATACTAATGCTTATAATTACTACTTTTACGCTCCGACATCGTCTTCTCCGTCTCTTCCGGCGGCGTTTTTCTGGGGTCTGTTTCTCTTCCAGTTGATGTTGTTGTCTTCATGGTGA

mRNA sequence

ATGGAACATTTCTCCGAAACCCTTCATTTCTCTTCCCTTTTCATTCTTCTCATCTTCCACCTCACCGGAGCTACGGCAGCTGTGGCCGAAGACGACCGTGTGGTCGAGGTGGTTCCTCCGGTTAGCCTTCTTTGTATTAGCGAATGTTCAACTTGCCCCACCATATGTGCGCCGCCGCCGCCGCCGCCCACGGTGGTGCCCAAGTCACCGCCACCGGTGCCCCATGTGCCACCACTGGCTTACTTCCCACTCAATTCACCCCCACCTCGACAAACCCCATCTCCACCGCCGCCGTCGCCGTCGCCACCACCGCCGCCGGCGGTGGCTTCATCTCATTCCCCGCCGCCTCCCGCATTCAAATATTATTTCAATTTGCCACCACCGCCGCCGGTGCTGATTCCAGTACCTGTGCCGCCGACCGGCACGGCGGCGCCTCATGGAAATACGAATACTAATGCTTATAATTACTACTTTTACGCTCCGACATCGTCTTCTCCGTCTCTTCCGGCGGCGTTTTTCTGGGGTCTGTTTCTCTTCCAGTTGATGTTGTTGTCTTCATGGTGA

Coding sequence (CDS)

ATGGAACATTTCTCCGAAACCCTTCATTTCTCTTCCCTTTTCATTCTTCTCATCTTCCACCTCACCGGAGCTACGGCAGCTGTGGCCGAAGACGACCGTGTGGTCGAGGTGGTTCCTCCGGTTAGCCTTCTTTGTATTAGCGAATGTTCAACTTGCCCCACCATATGTGCGCCGCCGCCGCCGCCGCCCACGGTGGTGCCCAAGTCACCGCCACCGGTGCCCCATGTGCCACCACTGGCTTACTTCCCACTCAATTCACCCCCACCTCGACAAACCCCATCTCCACCGCCGCCGTCGCCGTCGCCACCACCGCCGCCGGCGGTGGCTTCATCTCATTCCCCGCCGCCTCCCGCATTCAAATATTATTTCAATTTGCCACCACCGCCGCCGGTGCTGATTCCAGTACCTGTGCCGCCGACCGGCACGGCGGCGCCTCATGGAAATACGAATACTAATGCTTATAATTACTACTTTTACGCTCCGACATCGTCTTCTCCGTCTCTTCCGGCGGCGTTTTTCTGGGGTCTGTTTCTCTTCCAGTTGATGTTGTTGTCTTCATGGTGA

Protein sequence

MEHFSETLHFSSLFILLIFHLTGATAAVAEDDRVVEVVPPVSLLCISECSTCPTICAPPPPPPTVVPKSPPPVPHVPPLAYFPLNSPPPRQTPSPPPPSPSPPPPPAVASSHSPPPPAFKYYFNLPPPPPVLIPVPVPPTGTAAPHGNTNTNAYNYYFYAPTSSSPSLPAAFFWGLFLFQLMLLSSW

Homology

[Close]

BLAST of CcUC08G154020 vs. NCBI nr
Match: KAA0064726.1 (classical arabinogalactan protein 9-like [Cucumis melo var. makuwa])

HSP 1 Score: 274.2 bits (700), Expect = 8.1e-70
Identity = 157/190 (82.63%), Postives = 165/190 (86.84%), Query Frame = 0


Query: 1   MEHFSETLHFSSLFILLIFHLTGATAAVAEDDRVVEVVPPVSLLCISECSTCPTICAPPP 60
           MEHFS+TLHFSS+ ILLI  L G   A  ED RVV+VVPPVSLLCISECSTCPTICAPPP
Sbjct: 1   MEHFSKTLHFSSILILLILPLAG---AAPEDGRVVQVVPPVSLLCISECSTCPTICAPPP 60

Query: 61  PPPTVVPKSPPPVPHVPPLAYFPLNSPPPRQTPSPPPPSPSPPPPPAVA---SSHSPPPP 120
           PPPTV+ KSPPPVPHVPPLAYFPLNSPPPR T SPPPPSPSPPPPPA A   SSHSPPPP
Sbjct: 61  PPPTVL-KSPPPVPHVPPLAYFPLNSPPPRPTSSPPPPSPSPPPPPATATAVSSHSPPPP 120

Query: 121 AFKYYFNLPPPPPVLIPVPVPPTGTAAPHGNTNTNAYNYYFYAPTSSS--PSLPAAFFWG 180
           AF+YYFNLPPPPPVLIPVPVPP+ TAAP GNTN+NAYNYYFYAP SSS  PSLP AFFWG
Sbjct: 121 AFRYYFNLPPPPPVLIPVPVPPSATAAPRGNTNSNAYNYYFYAPASSSAPPSLPTAFFWG 180

Query: 181 LFLFQLMLLS 186
           LFLF L+L S
Sbjct: 181 LFLFHLILCS 186

[Close]

BLAST of CcUC08G154020 vs. NCBI nr
Match: XP_011657382.1 (extensin [Cucumis sativus] >KGN47605.1 hypothetical protein Csa_018938 [Cucumis sativus])

HSP 1 Score: 269.2 bits (687), Expect = 2.6e-68
Identity = 156/191 (81.68%), Postives = 162/191 (84.82%), Query Frame = 0


Query: 1   MEHFSETLHFSSLFILLIFHLTGATAAVAEDDRVVEVVPPVSLLCISECSTCPTICA-PP 60
           MEHFS+TLHFSS+ ILLI  L     AV ED RVVEVVPPVSLLCISECSTCPTICA PP
Sbjct: 1   MEHFSKTLHFSSILILLILRL---ARAVPEDGRVVEVVPPVSLLCISECSTCPTICAPPP 60

Query: 61  PPPPTVVPKSPPPVPHVPPLAYFPLNSPPPRQTPSPPPPSPSPPPPPAVA---SSHSPPP 120
           PPPP +V KSPPPVPHVPPLAYFPLNSPPPR T SPPPP PSPPPPPA A   SSHSPPP
Sbjct: 61  PPPPPIVLKSPPPVPHVPPLAYFPLNSPPPRPTSSPPPPWPSPPPPPATATAVSSHSPPP 120

Query: 121 PAFKYYFNLPPPPPVLIPVPVPPTGTAAPHGNTNTNAYNYYFYAPTSSS--PSLPAAFFW 180
           PAF+YYFNLPPPPPVLIPVPVPP+ TA PHGNTN+NAYNYYFYAP SSS  PSLP A FW
Sbjct: 121 PAFRYYFNLPPPPPVLIPVPVPPSATAGPHGNTNSNAYNYYFYAPASSSAPPSLPTALFW 180

Query: 181 GLFLFQLMLLS 186
           GLFLF LML S
Sbjct: 181 GLFLFHLMLCS 188

[Close]

BLAST of CcUC08G154020 vs. NCBI nr
Match: XP_008445508.1 (PREDICTED: classical arabinogalactan protein 9-like [Cucumis melo])

HSP 1 Score: 257.7 bits (657), Expect = 7.8e-65
Identity = 148/178 (83.15%), Postives = 155/178 (87.08%), Query Frame = 0


Query: 1   MEHFSETLHFSSLFILLIFHLTGATAAVAEDDRVVEVVPPVSLLCISECSTCPTICAPPP 60
           MEHFS+TLHFSS+ ILLI  L G   A  ED RVV+VVPPVSLLCISECSTCPTICAPPP
Sbjct: 1   MEHFSKTLHFSSILILLILPLAG---AAPEDGRVVQVVPPVSLLCISECSTCPTICAPPP 60

Query: 61  PPPTVVPKSPPPVPHVPPLAYFPLNSPPPRQTPSPPPPSPSPPPPPAVA---SSHSPPPP 120
           PPPTV+ KSPPPVPHVPPLAYFPLNSPPPR T SPPPPSPSPPPPPA A   SSHSPPPP
Sbjct: 61  PPPTVL-KSPPPVPHVPPLAYFPLNSPPPRPTSSPPPPSPSPPPPPATATAVSSHSPPPP 120

Query: 121 AFKYYFNLPPPPPVLIPVPVPPTGTAAPHGNTNTNAYNYYFYAPTSSS--PSLPAAFF 174
           AF+YYFNLPPPPPVLIPVPVPP+ TAAP GNTN+NAYNYYFYAP SSS  PSLP AFF
Sbjct: 121 AFRYYFNLPPPPPVLIPVPVPPSATAAPRGNTNSNAYNYYFYAPASSSAPPSLPTAFF 174

[Close]

BLAST of CcUC08G154020 vs. NCBI nr
Match: XP_022132157.1 (leucine-rich repeat extensin-like protein 3 [Momordica charantia])

HSP 1 Score: 216.5 bits (550), Expect = 2.0e-52
Identity = 136/191 (71.20%), Postives = 143/191 (74.87%), Query Frame = 0


Query: 1   MEHFSETLHFSSLFILLIFHLTGATAAVAEDDRVVEVVPPVSLLCISECSTCPTICAPPP 60
           MEHF    HFS L ILLI  L GA AA +ED R+VEVVPPVSLLCISECSTCP IC+ PP
Sbjct: 1   MEHFRRIFHFSCLSILLIIDLAGA-AAASEDHRLVEVVPPVSLLCISECSTCPVICS-PP 60

Query: 61  PPPTVVPKSPPPVPHVPPLAYFPLNSP----PPRQTPSPPPPSPSPPPPPAVASSHSPPP 120
           PPPT   KSPP  PH PPLAY PLN+P    PPR TPSP PP P PP PP  A SH PPP
Sbjct: 61  PPPTAALKSPP--PHSPPLAYVPLNAPPSPSPPRPTPSPSPPPPPPPSPPLAALSHPPPP 120

Query: 121 PAFKYYFNLPPPPPVLIPVPVPPTGTAAPHGNTNTNAYNYYFYAPTSSSPSLPAAFFWGL 180
           PAF YYFNLPPPPPVLIPVPVPP  TAAPHGNTN+NAYNYYFYA  SSS SLPA +   L
Sbjct: 121 PAFNYYFNLPPPPPVLIPVPVPPK-TAAPHGNTNSNAYNYYFYASKSSSLSLPATWLCAL 180

Query: 181 FLFQLMLLSSW 188
           F+FQ M  S W
Sbjct: 181 FVFQFM-FSCW 185

[Close]

BLAST of CcUC08G154020 vs. NCBI nr
Match: XP_022951103.1 (extensin-3-like [Cucurbita moschata])

HSP 1 Score: 198.4 bits (503), Expect = 5.6e-47
Identity = 130/184 (70.65%), Postives = 140/184 (76.09%), Query Frame = 0


Query: 1   MEHFSETLHFSSLFILLIFHLTGATAAVAEDDRVVEVVPPVSLLCISECSTCPTICAPPP 60
           MEH + T  F   FILLI HL GA A  +++ R+VEVVPPVSLLCISECSTCP ICA PP
Sbjct: 1   MEHSTTTTLF---FILLIVHLAGA-AMASDNHRLVEVVPPVSLLCISECSTCPVICA-PP 60

Query: 61  PPPTVVPKSPPPVPHVPPLAYFPLNSPPPRQTPSPPPPSPSPPPP--PAVASSHSPPPPA 120
           PPPTV  KSPPPVPH PP+A FPLN P     PSPP PSPSPPPP  P  ASSHSPPPPA
Sbjct: 61  PPPTVTLKSPPPVPHSPPMASFPLNPP-----PSPPRPSPSPPPPPVPVAASSHSPPPPA 120

Query: 121 FKYYFNLPPPPPVLIPVPVPPTGTAAPHGNTNTNAYNYYFYAPTSSSPSLPAAFFWGLFL 180
           FKYYF+LPPPPPVLIP P+PPT TAAPHG  NTNAYNYYFYA  S S + P  F W LFL
Sbjct: 121 FKYYFSLPPPPPVLIPEPLPPT-TAAPHG--NTNAYNYYFYASNSCSLNSP-VFLWALFL 170

Query: 181 FQLM 183
           F L+
Sbjct: 181 FHLV 170

[Close]

BLAST of CcUC08G154020 vs. ExPASy Swiss-Prot
Match: Q9T0K5 (Leucine-rich repeat extensin-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=LRX3 PE=1 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 1.2e-04
Identity = 50/99 (50.51%), Postives = 54/99 (54.55%), Query Frame = 0


Query: 50  STCPTICAPPPPPPTVVPKSPPPVPHVPPLAYFPLNSPPPRQTP---SPPPPSPSPPPPP 109
           ST PT+ +PPPP P     SPPP P  PP  Y P   PPP   P   SPPPP P PPPPP
Sbjct: 418 STPPTLTSPPPPSPPPPVYSPPPPPPPPPPVYSPPPPPPPPPPPPVYSPPPPPPPPPPPP 477

Query: 110 AVASSHSPPPPAFKYYFNLPPPPPVLIPVPVPPTGTAAP 146
            V   +SPPPP+       PPPPPV  P P PP     P
Sbjct: 478 PV---YSPPPPS-----PPPPPPPVYSPPPPPPPPPPPP 508

[Close]

BLAST of CcUC08G154020 vs. ExPASy TrEMBL
Match: A0A5A7VEH7 (Classical arabinogalactan protein 9-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G00300 PE=4 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 3.9e-70
Identity = 157/190 (82.63%), Postives = 165/190 (86.84%), Query Frame = 0


Query: 1   MEHFSETLHFSSLFILLIFHLTGATAAVAEDDRVVEVVPPVSLLCISECSTCPTICAPPP 60
           MEHFS+TLHFSS+ ILLI  L G   A  ED RVV+VVPPVSLLCISECSTCPTICAPPP
Sbjct: 1   MEHFSKTLHFSSILILLILPLAG---AAPEDGRVVQVVPPVSLLCISECSTCPTICAPPP 60

Query: 61  PPPTVVPKSPPPVPHVPPLAYFPLNSPPPRQTPSPPPPSPSPPPPPAVA---SSHSPPPP 120
           PPPTV+ KSPPPVPHVPPLAYFPLNSPPPR T SPPPPSPSPPPPPA A   SSHSPPPP
Sbjct: 61  PPPTVL-KSPPPVPHVPPLAYFPLNSPPPRPTSSPPPPSPSPPPPPATATAVSSHSPPPP 120

Query: 121 AFKYYFNLPPPPPVLIPVPVPPTGTAAPHGNTNTNAYNYYFYAPTSSS--PSLPAAFFWG 180
           AF+YYFNLPPPPPVLIPVPVPP+ TAAP GNTN+NAYNYYFYAP SSS  PSLP AFFWG
Sbjct: 121 AFRYYFNLPPPPPVLIPVPVPPSATAAPRGNTNSNAYNYYFYAPASSSAPPSLPTAFFWG 180

Query: 181 LFLFQLMLLS 186
           LFLF L+L S
Sbjct: 181 LFLFHLILCS 186

[Close]

BLAST of CcUC08G154020 vs. ExPASy TrEMBL
Match: A0A0A0KD44 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G363610 PE=4 SV=1)

HSP 1 Score: 269.2 bits (687), Expect = 1.3e-68
Identity = 156/191 (81.68%), Postives = 162/191 (84.82%), Query Frame = 0


Query: 1   MEHFSETLHFSSLFILLIFHLTGATAAVAEDDRVVEVVPPVSLLCISECSTCPTICA-PP 60
           MEHFS+TLHFSS+ ILLI  L     AV ED RVVEVVPPVSLLCISECSTCPTICA PP
Sbjct: 1   MEHFSKTLHFSSILILLILRL---ARAVPEDGRVVEVVPPVSLLCISECSTCPTICAPPP 60

Query: 61  PPPPTVVPKSPPPVPHVPPLAYFPLNSPPPRQTPSPPPPSPSPPPPPAVA---SSHSPPP 120
           PPPP +V KSPPPVPHVPPLAYFPLNSPPPR T SPPPP PSPPPPPA A   SSHSPPP
Sbjct: 61  PPPPPIVLKSPPPVPHVPPLAYFPLNSPPPRPTSSPPPPWPSPPPPPATATAVSSHSPPP 120

Query: 121 PAFKYYFNLPPPPPVLIPVPVPPTGTAAPHGNTNTNAYNYYFYAPTSSS--PSLPAAFFW 180
           PAF+YYFNLPPPPPVLIPVPVPP+ TA PHGNTN+NAYNYYFYAP SSS  PSLP A FW
Sbjct: 121 PAFRYYFNLPPPPPVLIPVPVPPSATAGPHGNTNSNAYNYYFYAPASSSAPPSLPTALFW 180

Query: 181 GLFLFQLMLLS 186
           GLFLF LML S
Sbjct: 181 GLFLFHLMLCS 188

[Close]

BLAST of CcUC08G154020 vs. ExPASy TrEMBL
Match: A0A1S3BCX5 (classical arabinogalactan protein 9-like OS=Cucumis melo OX=3656 GN=LOC103488504 PE=4 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 3.8e-65
Identity = 148/178 (83.15%), Postives = 155/178 (87.08%), Query Frame = 0


Query: 1   MEHFSETLHFSSLFILLIFHLTGATAAVAEDDRVVEVVPPVSLLCISECSTCPTICAPPP 60
           MEHFS+TLHFSS+ ILLI  L G   A  ED RVV+VVPPVSLLCISECSTCPTICAPPP
Sbjct: 1   MEHFSKTLHFSSILILLILPLAG---AAPEDGRVVQVVPPVSLLCISECSTCPTICAPPP 60

Query: 61  PPPTVVPKSPPPVPHVPPLAYFPLNSPPPRQTPSPPPPSPSPPPPPAVA---SSHSPPPP 120
           PPPTV+ KSPPPVPHVPPLAYFPLNSPPPR T SPPPPSPSPPPPPA A   SSHSPPPP
Sbjct: 61  PPPTVL-KSPPPVPHVPPLAYFPLNSPPPRPTSSPPPPSPSPPPPPATATAVSSHSPPPP 120

Query: 121 AFKYYFNLPPPPPVLIPVPVPPTGTAAPHGNTNTNAYNYYFYAPTSSS--PSLPAAFF 174
           AF+YYFNLPPPPPVLIPVPVPP+ TAAP GNTN+NAYNYYFYAP SSS  PSLP AFF
Sbjct: 121 AFRYYFNLPPPPPVLIPVPVPPSATAAPRGNTNSNAYNYYFYAPASSSAPPSLPTAFF 174

[Close]

BLAST of CcUC08G154020 vs. ExPASy TrEMBL
Match: A0A6J1BT26 (leucine-rich repeat extensin-like protein 3 OS=Momordica charantia OX=3673 GN=LOC111005088 PE=4 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 9.7e-53
Identity = 136/191 (71.20%), Postives = 143/191 (74.87%), Query Frame = 0


Query: 1   MEHFSETLHFSSLFILLIFHLTGATAAVAEDDRVVEVVPPVSLLCISECSTCPTICAPPP 60
           MEHF    HFS L ILLI  L GA AA +ED R+VEVVPPVSLLCISECSTCP IC+ PP
Sbjct: 1   MEHFRRIFHFSCLSILLIIDLAGA-AAASEDHRLVEVVPPVSLLCISECSTCPVICS-PP 60

Query: 61  PPPTVVPKSPPPVPHVPPLAYFPLNSP----PPRQTPSPPPPSPSPPPPPAVASSHSPPP 120
           PPPT   KSPP  PH PPLAY PLN+P    PPR TPSP PP P PP PP  A SH PPP
Sbjct: 61  PPPTAALKSPP--PHSPPLAYVPLNAPPSPSPPRPTPSPSPPPPPPPSPPLAALSHPPPP 120

Query: 121 PAFKYYFNLPPPPPVLIPVPVPPTGTAAPHGNTNTNAYNYYFYAPTSSSPSLPAAFFWGL 180
           PAF YYFNLPPPPPVLIPVPVPP  TAAPHGNTN+NAYNYYFYA  SSS SLPA +   L
Sbjct: 121 PAFNYYFNLPPPPPVLIPVPVPPK-TAAPHGNTNSNAYNYYFYASKSSSLSLPATWLCAL 180

Query: 181 FLFQLMLLSSW 188
           F+FQ M  S W
Sbjct: 181 FVFQFM-FSCW 185

[Close]

BLAST of CcUC08G154020 vs. ExPASy TrEMBL
Match: A0A6J1GGS2 (extensin-3-like OS=Cucurbita moschata OX=3662 GN=LOC111454053 PE=4 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 2.7e-47
Identity = 130/184 (70.65%), Postives = 140/184 (76.09%), Query Frame = 0


Query: 1   MEHFSETLHFSSLFILLIFHLTGATAAVAEDDRVVEVVPPVSLLCISECSTCPTICAPPP 60
           MEH + T  F   FILLI HL GA A  +++ R+VEVVPPVSLLCISECSTCP ICA PP
Sbjct: 1   MEHSTTTTLF---FILLIVHLAGA-AMASDNHRLVEVVPPVSLLCISECSTCPVICA-PP 60

Query: 61  PPPTVVPKSPPPVPHVPPLAYFPLNSPPPRQTPSPPPPSPSPPPP--PAVASSHSPPPPA 120
           PPPTV  KSPPPVPH PP+A FPLN P     PSPP PSPSPPPP  P  ASSHSPPPPA
Sbjct: 61  PPPTVTLKSPPPVPHSPPMASFPLNPP-----PSPPRPSPSPPPPPVPVAASSHSPPPPA 120

Query: 121 FKYYFNLPPPPPVLIPVPVPPTGTAAPHGNTNTNAYNYYFYAPTSSSPSLPAAFFWGLFL 180
           FKYYF+LPPPPPVLIP P+PPT TAAPHG  NTNAYNYYFYA  S S + P  F W LFL
Sbjct: 121 FKYYFSLPPPPPVLIPEPLPPT-TAAPHG--NTNAYNYYFYASNSCSLNSP-VFLWALFL 170

Query: 181 FQLM 183
           F L+
Sbjct: 181 FHLV 170

[Close]

BLAST of CcUC08G154020 vs. TAIR 10
Match: AT5G11990.1 (proline-rich family protein )

HSP 1 Score: 51.6 bits (122), Expect = 7.9e-07
Identity = 72/182 (39.56%), Postives = 93/182 (51.10%), Query Frame = 0


Query: 13  LFILLIFHLTGATAAVAEDDRVVEVVPPVSLLCISECSTCPTICAPPPPPPTVVPKSPPP 72
           L +++I  +     A +  D+   + P    LCISECSTCPTIC+PPP  P+    SPPP
Sbjct: 3   LIVIIIALVMVMVVASSPSDQTNVLTP----LCISECSTCPTICSPPPSKPS-PSMSPPP 62

Query: 73  VPHVPPLAYFPLNSPPPRQTPSPPPPSPSPPPPPAVASSHSPPPPAFKYYFNLPPPPPVL 132
            P +P  +  P   PPP    SPPP S S  PPP +   H PPPP F YYF   PPPP L
Sbjct: 63  SPSLPLSSSPP---PPPPHKHSPPPLSQSLSPPPLITVIH-PPPPRF-YYFESTPPPPPL 122

Query: 133 IP-----VPVPPTGTAAPHGNTNTN---AYNY-YFYAPTSSSPSLPAAFFWGLFLFQLML 186
            P      P  P+   +P G +       Y + YFY  T+S+ +L    F   FL  L++
Sbjct: 123 SPDGKGSPPSVPSSPPSPKGQSQGQQQPPYPFPYFYFYTASNATL---LFSSSFLIALVV 171

[Close]

BLAST of CcUC08G154020 vs. TAIR 10
Match: AT4G13340.1 (Leucine-rich repeat (LRR) family protein )

HSP 1 Score: 48.1 bits (113), Expect = 8.8e-06
Identity = 50/99 (50.51%), Postives = 54/99 (54.55%), Query Frame = 0


Query: 50  STCPTICAPPPPPPTVVPKSPPPVPHVPPLAYFPLNSPPPRQTP---SPPPPSPSPPPPP 109
           ST PT+ +PPPP P     SPPP P  PP  Y P   PPP   P   SPPPP P PPPPP
Sbjct: 418 STPPTLTSPPPPSPPPPVYSPPPPPPPPPPVYSPPPPPPPPPPPPVYSPPPPPPPPPPPP 477

Query: 110 AVASSHSPPPPAFKYYFNLPPPPPVLIPVPVPPTGTAAP 146
            V   +SPPPP+       PPPPPV  P P PP     P
Sbjct: 478 PV---YSPPPPS-----PPPPPPPVYSPPPPPPPPPPPP 508

[Close]

BLAST of CcUC08G154020 vs. TAIR 10
Match: AT1G26240.1 (Proline-rich extensin-like family protein )

HSP 1 Score: 42.7 bits (99), Expect = 3.7e-04
Identity = 48/101 (47.52%), Postives = 56/101 (55.45%), Query Frame = 0


Query: 53  PTICAPPPPPPTVVPKSPPPVPHV----PPLAYFPLNSPPPRQTPSPPPPSP----SPPP 112
           P + + PPPPP V  KSPPP P+V    PP  Y   + PPP    S PPPSP    SPPP
Sbjct: 314 PYVYSSPPPPPYVY-KSPPPPPYVYNSPPPPPYVYKSPPPPPYVYSSPPPSPYVYKSPPP 373

Query: 113 PPAVASSHSPPPPAFK------YYFNLPPPPPVLIPVPVPP 140
           PP V SS  PPP  +K      Y ++ PPPPP +   P PP
Sbjct: 374 PPYVYSSPPPPPYVYKSPPPPPYVYSSPPPPPYVYKSPPPP 413

The following BLAST results are available for this feature:

BLAST of CcUC08G154020 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0064726.1	8.1e-70	82.63	classical arabinogalactan protein 9-like [Cucumis melo var. makuwa]	[more]
XP_011657382.1	2.6e-68	81.68	extensin [Cucumis sativus] >KGN47605.1 hypothetical protein Csa_018938 [Cucumis ...	[more]
XP_008445508.1	7.8e-65	83.15	PREDICTED: classical arabinogalactan protein 9-like [Cucumis melo]	[more]
XP_022132157.1	2.0e-52	71.20	leucine-rich repeat extensin-like protein 3 [Momordica charantia]	[more]
XP_022951103.1	5.6e-47	70.65	extensin-3-like [Cucurbita moschata]	[more]

BLAST of CcUC08G154020 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9T0K5	1.2e-04	50.51	Leucine-rich repeat extensin-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=L...	[more]

BLAST of CcUC08G154020 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VEH7	3.9e-70	82.63	Classical arabinogalactan protein 9-like OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A0A0KD44	1.3e-68	81.68	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G363610 PE=4 SV=1	[more]
A0A1S3BCX5	3.8e-65	83.15	classical arabinogalactan protein 9-like OS=Cucumis melo OX=3656 GN=LOC103488504...	[more]
A0A6J1BT26	9.7e-53	71.20	leucine-rich repeat extensin-like protein 3 OS=Momordica charantia OX=3673 GN=LO...	[more]
A0A6J1GGS2	2.7e-47	70.65	extensin-3-like OS=Cucurbita moschata OX=3662 GN=LOC111454053 PE=4 SV=1	[more]

BLAST of CcUC08G154020 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G11990.1	7.9e-07	39.56	proline-rich family protein	[more]
AT4G13340.1	8.8e-06	50.51	Leucine-rich repeat (LRR) family protein	[more]
AT1G26240.1	3.7e-04	47.52	Proline-rich extensin-like family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR01217	PRICHEXTENSN	coord: 71..87 score: 38.82 coord: 51..63 score: 46.15 coord: 93..105 score: 60.0 coord: 108..129 score: 29.09
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 82..112

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC08G154020.1	CcUC08G154020.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane