Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exon CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGACCGGTTCCTTGCAAAAGAAGAGCCCAAAATTTTTTGAAGAAGAAAATCAAGGTAAATCCATGGTTATCACCACAAACAGAGGATCCAACCCCGCAGAATCCACCATTCCTTCTGTTTCTACCTTCAAGATCCCATCCTTCTTTCTCAAAACCTTCCAAAAAAGATTCGATTACTGCAACACTAACAACGATGGAAAAGAAATTTCCAGCGACATCGAGAAGAAGAAGAAGTGCCTCATCGAATTTGCCTCTCTGTTCTACAAATTCTTCGGCGGATTCAAATTCTCGGCCTGCAGATTCGGAAGCAAGATCGATGGAGAACACCAAGATTCTTCAAGCGAATCGGAAGCCGAAGAAGAAGAATATCGCGACGAACGGGATGAAATTTTTTACGGATCGGAAACAAAGAAGAAACTTCTTAAAAACGAGAAGATCTCAAGCCAATTGAAACTTCCTGTATCAATCTTAGATGTATTTAGCAAGAAGAATGCGATGGATTTCAATTTCAGTTTCGTCAAGAGCAGAATCTGCAAGGGGAAAAATGGGAACAGAAACAGAAATCTCGATTACGACCAAAATCTCAGAGAAAATGAATCGGTTACTCGATTGAGCCGAGAAAATCTTAAGGGAGAAGGGAAAAATTCAACGGCAATTTCATACCATGAAGATGATGAAAAGGGAGAACGATTATGGCAGAAAAGAATTCTAATGGGAGAGAGATGTAAACCTGTAATGCATACCTCTGTAAGTCTTCGATAG mRNA sequence
ATGGAGACCGGTTCCTTGCAAAAGAAGAGCCCAAAATTTTTTGAAGAAGAAAATCAAGGTAAATCCATGGTTATCACCACAAACAGAGGATCCAACCCCGCAGAATCCACCATTCCTTCTGTTTCTACCTTCAAGATCCCATCCTTCTTTCTCAAAACCTTCCAAAAAAGATTCGATTACTGCAACACTAACAACGATGGAAAAGAAATTTCCAGCGACATCGAGAAGAAGAAGAAGTGCCTCATCGAATTTGCCTCTCTGTTCTACAAATTCTTCGGCGGATTCAAATTCTCGGCCTGCAGATTCGGAAGCAAGATCGATGGAGAACACCAAGATTCTTCAAGCGAATCGGAAGCCGAAGAAGAAGAATATCGCGACGAACGGGATGAAATTTTTTACGGATCGGAAACAAAGAAGAAACTTCTTAAAAACGAGAAGATCTCAAGCCAATTGAAACTTCCTGTATCAATCTTAGATGTATTTAGCAAGAAGAATGCGATGGATTTCAATTTCAGTTTCGTCAAGAGCAGAATCTGCAAGGGGAAAAATGGGAACAGAAACAGAAATCTCGATTACGACCAAAATCTCAGAGAAAATGAATCGGTTACTCGATTGAGCCGAGAAAATCTTAAGGGAGAAGGGAAAAATTCAACGGCAATTTCATACCATGAAGATGATGAAAAGGGAGAACGATTATGGCAGAAAAGAATTCTAATGGGAGAGAGATGTAAACCTGTAATGCATACCTCTGTAAGTCTTCGATAG Coding sequence (CDS)
ATGGAGACCGGTTCCTTGCAAAAGAAGAGCCCAAAATTTTTTGAAGAAGAAAATCAAGGTAAATCCATGGTTATCACCACAAACAGAGGATCCAACCCCGCAGAATCCACCATTCCTTCTGTTTCTACCTTCAAGATCCCATCCTTCTTTCTCAAAACCTTCCAAAAAAGATTCGATTACTGCAACACTAACAACGATGGAAAAGAAATTTCCAGCGACATCGAGAAGAAGAAGAAGTGCCTCATCGAATTTGCCTCTCTGTTCTACAAATTCTTCGGCGGATTCAAATTCTCGGCCTGCAGATTCGGAAGCAAGATCGATGGAGAACACCAAGATTCTTCAAGCGAATCGGAAGCCGAAGAAGAAGAATATCGCGACGAACGGGATGAAATTTTTTACGGATCGGAAACAAAGAAGAAACTTCTTAAAAACGAGAAGATCTCAAGCCAATTGAAACTTCCTGTATCAATCTTAGATGTATTTAGCAAGAAGAATGCGATGGATTTCAATTTCAGTTTCGTCAAGAGCAGAATCTGCAAGGGGAAAAATGGGAACAGAAACAGAAATCTCGATTACGACCAAAATCTCAGAGAAAATGAATCGGTTACTCGATTGAGCCGAGAAAATCTTAAGGGAGAAGGGAAAAATTCAACGGCAATTTCATACCATGAAGATGATGAAAAGGGAGAACGATTATGGCAGAAAAGAATTCTAATGGGAGAGAGATGTAAACCTGTAATGCATACCTCTGTAAGTCTTCGATAG Protein sequence
METGSLQKKSPKFFEEENQGKSMVITTNRGSNPAESTIPSVSTFKIPSFFLKTFQKRFDYCNTNNDGKEISSDIEKKKKCLIEFASLFYKFFGGFKFSACRFGSKIDGEHQDSSSESEAEEEEYRDERDEIFYGSETKKKLLKNEKISSQLKLPVSILDVFSKKNAMDFNFSFVKSRICKGKNGNRNRNLDYDQNLRENESVTRLSRENLKGEGKNSTAISYHEDDEKGERLWQKRILMGERCKPVMHTSVSLR
Homology
BLAST of CcUC08G148210 vs. NCBI nr
Match:
KAG6592883.1 (hypothetical protein SDJN03_12359, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 244.2 bits (622), Expect = 1.2e-60
Identity = 152/270 (56.30%), Postives = 184/270 (68.15%), Query Frame = 0
Query: 1 METGSLQKKSPKFFEEENQGKSMVITTN-RGSNPAESTIPSVSTFKIPSFFLKTFQKRFD 60 ME G L K PK F+EE Q S+VI TN GS+PAEST PSVS K+P+FFLK F+KRFD Sbjct: 1 MEIGFLHKIRPKEFQEETQEASVVIITNTTGSDPAESTTPSVSYLKVPTFFLKPFRKRFD 60 Query: 61 YCNTNNDGKEISSDIEKKKKCLIEFASLFYKFFGGFKFSACRFGSKIDGEHQDSSSESEA 120 YC N KE S +IE KKK L E AS+F K FGG K SAC G KIDG+ D SESEA Sbjct: 61 YCTDNIKEKENSIEIE-KKKWLAEVASMFCKIFGGGKLSACGIGGKIDGDDDDFLSESEA 120 Query: 121 EEEEYRDERDEIFYG-----SETKKKLLKNEKISSQLKLPVSILDVFSKKNAMDFNFSFV 180 ++YR++R+EIF SET+ + +EK SSQ +LP SILD+F K+N FNF+F+ Sbjct: 121 -GDDYREDREEIFAAESNGESETENIIRSDEKSSSQSRLPTSILDLFRKRN---FNFNFI 180 Query: 181 KSRICKGKNGNRNRNLDYDQNLRENESVTRL-SRENLK------------GEGKNSTAIS 240 KSRICK K+G RNRNL+Y++NLR NES +REN K + K STAIS Sbjct: 181 KSRICKVKSGYRNRNLNYEKNLRNNESAMLFANRENHKRLFQIPSKDRKQTKEKKSTAIS 240 Query: 241 YHEDDEKGERLWQKRILMGERCKPVMHTSV 252 YHE DE G+RLWQKRILMG RCKP+ +TS+ Sbjct: 241 YHEGDENGQRLWQKRILMGGRCKPLRNTSI 265
BLAST of CcUC08G148210 vs. NCBI nr
Match:
KAG6607704.1 (hypothetical protein SDJN03_01046, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 77.0 bits (188), Expect = 2.6e-10
Identity = 52/103 (50.49%), Postives = 63/103 (61.17%), Query Frame = 0
Query: 1 METGSLQKKSPKFFEEENQGKSMVITTN-RGSNPAESTIPSVSTFKIPSFFL----KTFQ 60 ME G L K PK F+EE Q S+VI TN GS+PAEST PSVS K+P+FFL KTF+ Sbjct: 1 MEIGFLHKIRPKEFQEETQEASVVIITNTTGSDPAESTTPSVSYLKVPTFFLKKKKKTFR 60 Query: 61 KRFDYCNTNNDGKEISSDIEKKKKCLIEFASLFYKFFGGFKFS 99 K+ K+ +S +KKK L E AS+F K FGG K S Sbjct: 61 KKDSITAPITSRKKKNSIEIEKKKWLAEVASMFCKIFGGGKNS 103
The following BLAST results are available for this feature:
Match Name E-value Identity Description
KAG6592883.1 1.2e-60 56.30 hypothetical protein SDJN03_12359, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6607704.1 2.6e-10 50.49 hypothetical protein SDJN03_01046, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match Name E-value Identity Description
Match Name E-value Identity Description
Match Name E-value Identity Description
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31
A T G G A G A C C G G T T C C T T G C A A A A G A A G A G C C C A A A A T T T T T T G A A G A A G A A A A T C A A G G T A A A T C C A T G G T T A T C A C C A C A A A C A G A G G A T C C A A C C C C G C A G A A T C C A C C A T T C C T T C T G T T T C T A C C T T C A A G A T C C C A T C C T T C T T T C T C A A A A C C T T C C A A A A A A G A T T C G A T T A C T G C A A C A C T A A C A A C G A T G G A A A A G A A A T T T C C A G C G A C A T C G A G A A G A A G A A G A A G T G C C T C A T C G A A T T T G C C T C T C T G T T C T A C A A A T T C T T C G G C G G A T T C A A A T T C T C G G C C T G C A G A T T C G G A A G C A A G A T C G A T G G A G A A C A C C A A G A T T C T T C A A G C G A A T C G G A A G C C G A A G A A G A A G A A T A T C G C G A C G A A C G G G A T G A A A T T T T T T A C G G A T C G G A A A C A A A G A A G A A A C T T C T T A A A A A C G A G A A G A T C T C A A G C C A A T T G A A A C T T C C T G T A T C A A T C T T A G A T G T A T T T A G C A A G A A G A A T G C G A T G G A T T T C A A T T T C A G T T T C G T C A A G A G C A G A A T C T G C A A G G G G A A A A A T G G G A A C A G A A A C A G A A A T C T C G A T T A C G A C C A A A A T C T C A G A G A A A A T G A A T C G G T T A C T C G A T T G A G C C G A G A A A A T C T T A A G G G A G A A G G G A A A A A T T C A A C G G C A A T T T C A T A C C A T G A A G A T G A T G A A A A G G G A G A A C G A T T A T G G C A G A A A A G A A T T C T A A T G G G A G A G A G A T G T A A A C C T G T A A T G C A T A C C T C T G T A A G T C T T C G A T A G 100 200 300 400 500 600 700 Score = Sequence mobidb-lite
IPR Term IPR Description Source Source Term Source Description Alignment
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 107..127
Relationships
The following mRNA feature(s) are a part of this gene: