CcUC08G148210 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC08G148210
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionUnknown protein
LocationCicolChr08: 10938800 .. 10939564 (+)
RNA-Seq ExpressionCcUC08G148210
SyntenyCcUC08G148210
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGACCGGTTCCTTGCAAAAGAAGAGCCCAAAATTTTTTGAAGAAGAAAATCAAGGTAAATCCATGGTTATCACCACAAACAGAGGATCCAACCCCGCAGAATCCACCATTCCTTCTGTTTCTACCTTCAAGATCCCATCCTTCTTTCTCAAAACCTTCCAAAAAAGATTCGATTACTGCAACACTAACAACGATGGAAAAGAAATTTCCAGCGACATCGAGAAGAAGAAGAAGTGCCTCATCGAATTTGCCTCTCTGTTCTACAAATTCTTCGGCGGATTCAAATTCTCGGCCTGCAGATTCGGAAGCAAGATCGATGGAGAACACCAAGATTCTTCAAGCGAATCGGAAGCCGAAGAAGAAGAATATCGCGACGAACGGGATGAAATTTTTTACGGATCGGAAACAAAGAAGAAACTTCTTAAAAACGAGAAGATCTCAAGCCAATTGAAACTTCCTGTATCAATCTTAGATGTATTTAGCAAGAAGAATGCGATGGATTTCAATTTCAGTTTCGTCAAGAGCAGAATCTGCAAGGGGAAAAATGGGAACAGAAACAGAAATCTCGATTACGACCAAAATCTCAGAGAAAATGAATCGGTTACTCGATTGAGCCGAGAAAATCTTAAGGGAGAAGGGAAAAATTCAACGGCAATTTCATACCATGAAGATGATGAAAAGGGAGAACGATTATGGCAGAAAAGAATTCTAATGGGAGAGAGATGTAAACCTGTAATGCATACCTCTGTAAGTCTTCGATAG

mRNA sequence

ATGGAGACCGGTTCCTTGCAAAAGAAGAGCCCAAAATTTTTTGAAGAAGAAAATCAAGGTAAATCCATGGTTATCACCACAAACAGAGGATCCAACCCCGCAGAATCCACCATTCCTTCTGTTTCTACCTTCAAGATCCCATCCTTCTTTCTCAAAACCTTCCAAAAAAGATTCGATTACTGCAACACTAACAACGATGGAAAAGAAATTTCCAGCGACATCGAGAAGAAGAAGAAGTGCCTCATCGAATTTGCCTCTCTGTTCTACAAATTCTTCGGCGGATTCAAATTCTCGGCCTGCAGATTCGGAAGCAAGATCGATGGAGAACACCAAGATTCTTCAAGCGAATCGGAAGCCGAAGAAGAAGAATATCGCGACGAACGGGATGAAATTTTTTACGGATCGGAAACAAAGAAGAAACTTCTTAAAAACGAGAAGATCTCAAGCCAATTGAAACTTCCTGTATCAATCTTAGATGTATTTAGCAAGAAGAATGCGATGGATTTCAATTTCAGTTTCGTCAAGAGCAGAATCTGCAAGGGGAAAAATGGGAACAGAAACAGAAATCTCGATTACGACCAAAATCTCAGAGAAAATGAATCGGTTACTCGATTGAGCCGAGAAAATCTTAAGGGAGAAGGGAAAAATTCAACGGCAATTTCATACCATGAAGATGATGAAAAGGGAGAACGATTATGGCAGAAAAGAATTCTAATGGGAGAGAGATGTAAACCTGTAATGCATACCTCTGTAAGTCTTCGATAG

Coding sequence (CDS)

ATGGAGACCGGTTCCTTGCAAAAGAAGAGCCCAAAATTTTTTGAAGAAGAAAATCAAGGTAAATCCATGGTTATCACCACAAACAGAGGATCCAACCCCGCAGAATCCACCATTCCTTCTGTTTCTACCTTCAAGATCCCATCCTTCTTTCTCAAAACCTTCCAAAAAAGATTCGATTACTGCAACACTAACAACGATGGAAAAGAAATTTCCAGCGACATCGAGAAGAAGAAGAAGTGCCTCATCGAATTTGCCTCTCTGTTCTACAAATTCTTCGGCGGATTCAAATTCTCGGCCTGCAGATTCGGAAGCAAGATCGATGGAGAACACCAAGATTCTTCAAGCGAATCGGAAGCCGAAGAAGAAGAATATCGCGACGAACGGGATGAAATTTTTTACGGATCGGAAACAAAGAAGAAACTTCTTAAAAACGAGAAGATCTCAAGCCAATTGAAACTTCCTGTATCAATCTTAGATGTATTTAGCAAGAAGAATGCGATGGATTTCAATTTCAGTTTCGTCAAGAGCAGAATCTGCAAGGGGAAAAATGGGAACAGAAACAGAAATCTCGATTACGACCAAAATCTCAGAGAAAATGAATCGGTTACTCGATTGAGCCGAGAAAATCTTAAGGGAGAAGGGAAAAATTCAACGGCAATTTCATACCATGAAGATGATGAAAAGGGAGAACGATTATGGCAGAAAAGAATTCTAATGGGAGAGAGATGTAAACCTGTAATGCATACCTCTGTAAGTCTTCGATAG

Protein sequence

METGSLQKKSPKFFEEENQGKSMVITTNRGSNPAESTIPSVSTFKIPSFFLKTFQKRFDYCNTNNDGKEISSDIEKKKKCLIEFASLFYKFFGGFKFSACRFGSKIDGEHQDSSSESEAEEEEYRDERDEIFYGSETKKKLLKNEKISSQLKLPVSILDVFSKKNAMDFNFSFVKSRICKGKNGNRNRNLDYDQNLRENESVTRLSRENLKGEGKNSTAISYHEDDEKGERLWQKRILMGERCKPVMHTSVSLR
Homology
[Close]
BLAST of CcUC08G148210 vs. NCBI nr
Match: KAG6592883.1 (hypothetical protein SDJN03_12359, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 244.2 bits (622), Expect = 1.2e-60
Identity = 152/270 (56.30%), Postives = 184/270 (68.15%), Query Frame = 0 

Query: 1   METGSLQKKSPKFFEEENQGKSMVITTN-RGSNPAESTIPSVSTFKIPSFFLKTFQKRFD 60
           ME G L K  PK F+EE Q  S+VI TN  GS+PAEST PSVS  K+P+FFLK F+KRFD
Sbjct: 1   MEIGFLHKIRPKEFQEETQEASVVIITNTTGSDPAESTTPSVSYLKVPTFFLKPFRKRFD 60

Query: 61  YCNTNNDGKEISSDIEKKKKCLIEFASLFYKFFGGFKFSACRFGSKIDGEHQDSSSESEA 120
           YC  N   KE S +IE KKK L E AS+F K FGG K SAC  G KIDG+  D  SESEA
Sbjct: 61  YCTDNIKEKENSIEIE-KKKWLAEVASMFCKIFGGGKLSACGIGGKIDGDDDDFLSESEA 120

Query: 121 EEEEYRDERDEIFYG-----SETKKKLLKNEKISSQLKLPVSILDVFSKKNAMDFNFSFV 180
             ++YR++R+EIF       SET+  +  +EK SSQ +LP SILD+F K+N   FNF+F+
Sbjct: 121 -GDDYREDREEIFAAESNGESETENIIRSDEKSSSQSRLPTSILDLFRKRN---FNFNFI 180

Query: 181 KSRICKGKNGNRNRNLDYDQNLRENESVTRL-SRENLK------------GEGKNSTAIS 240
           KSRICK K+G RNRNL+Y++NLR NES     +REN K             + K STAIS
Sbjct: 181 KSRICKVKSGYRNRNLNYEKNLRNNESAMLFANRENHKRLFQIPSKDRKQTKEKKSTAIS 240

Query: 241 YHEDDEKGERLWQKRILMGERCKPVMHTSV 252
           YHE DE G+RLWQKRILMG RCKP+ +TS+
Sbjct: 241 YHEGDENGQRLWQKRILMGGRCKPLRNTSI 265

[Close]
BLAST of CcUC08G148210 vs. NCBI nr
Match: KAG6607704.1 (hypothetical protein SDJN03_01046, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 77.0 bits (188), Expect = 2.6e-10
Identity = 52/103 (50.49%), Postives = 63/103 (61.17%), Query Frame = 0 

Query: 1   METGSLQKKSPKFFEEENQGKSMVITTN-RGSNPAESTIPSVSTFKIPSFFL----KTFQ 60
           ME G L K  PK F+EE Q  S+VI TN  GS+PAEST PSVS  K+P+FFL    KTF+
Sbjct: 1   MEIGFLHKIRPKEFQEETQEASVVIITNTTGSDPAESTTPSVSYLKVPTFFLKKKKKTFR 60

Query: 61  KRFDYCNTNNDGKEISSDIEKKKKCLIEFASLFYKFFGGFKFS 99
           K+          K+ +S   +KKK L E AS+F K FGG K S
Sbjct: 61  KKDSITAPITSRKKKNSIEIEKKKWLAEVASMFCKIFGGGKNS 103

The following BLAST results are available for this feature:
BLAST of CcUC08G148210 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6592883.11.2e-6056.30hypothetical protein SDJN03_12359, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6607704.12.6e-1050.49hypothetical protein SDJN03_01046, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of CcUC08G148210 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CcUC08G148210 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CcUC08G148210 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 107..127

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC08G148210.1CcUC08G148210.1mRNA