CcUC06G122610 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC06G122610
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	glycine-rich cell wall structural protein 2-like
Location	CicolChr06: 24968046 .. 24971332 (-)
RNA-Seq Expression	CcUC06G122610
Synteny	CcUC06G122610

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTTCAATCAAGTCCCTTGCGGTTGCTGTTTGCTTTTTACTCTCTTTTTCCGCCATTCTCTCTGAAGGTCCAGTCGCCAGAAAGGATCTCGGGATTGACCTTGGAGGAGTCGGAGTTGGACTTGGAGCTGGAATTGGCTTAGGCTTAGGTGGAAGTGGTTCTGGCTCCGGTTCTGGCTCTGGGTCCAGTTCATCTTCATCTTCTTCATCATACTCCTCCAGCTCAAGCTCTGGGTCCGGAGCTGGGTCCGAAGCTGGCTCGTACGCAGGGTCTCGAGCAGGGTCAGGTTCGGGTGGAAACAGGAATGGAGGGTCTGGATCTGGTTCGGGATATGGTGGAGGTTGGGGCAGAGGAGGCGGCAATGGCGGCGGTGAAGGATATGGTGAAGCTCATGGCTATGGTGAGGGTCATGGTTATGGAGGAGGTAACTAAAGAAAAAATCATAGCTAGGGAAGGACGTATTAATAGGAAAGTATAGCAGGTAGGTTACGTGGTTGATTTAAATCGTGGTCTTAATTTTATGTATTTAAATAAAGATAAGAGATGATGGAGGCGTGTGTTTAGTGTTCGTGTTGTAGCAGTCGTGAAATTGTCTTAGACGCGTGTGACGGATTTTCATGTTTATGTTTCACAATATATATTAATGTGGACTTGTTGCGGATATTATATGCAAAATACGTAGTTTTCTTTTTAAACCTCCCCTAAACTAATATATTCTACTATTATTTTGTAGTTGCCATCGAAAAACACCACATCTATGACCAAAACATATGCTGGTTTTTATTTTCTTTTTTTTTTTTAAATAATAATAATAAATAAGCTGCTTTTATTAGAAAATGTTTGTTAAGATTTCAAAATTTACTTTTGAAGAATAAAATTATATAAAAAAATTAATTGCCAAACAGGAGTTTGAATCCTGAATTGGCTTTGTTTCCGCAACATGCCATTACGGTTGTCAAGAACATCTTAGTTGTATGAACCATGCATCTTTTCTAGAGAATATTTTTTCTTATATGTTACAGATTTTTTGGAAGATACTTTCTATTTCCTGTATATGGATGATTCTTTTGTCTTTACAAACTTGTTTCCTTATTAAGAATATATATAGTTGGGCTCATGGTGTATTTTAGGGTTATTTTAGGGTTACGACTTTTGAAGACCTCATGTGTATGTTTGACGTCAAGGAGTTGTGCCAAAAAGATGAGGTGTCCCTCACTGAGAGATTGTGGTTGTTGTACTTACTCTAAAATGTTAGTTCATGTTTCTATTCCTGAAAAGAATAAACTTCAGTATTGACTTAATACTCAAAGGAGTCTAAATTCTAATATTGAGAAGGATTCTTAGTCGTAGGGGAGCCTAAATAATCTTTTTCTGAGGTGTATATCAAACAAGAAGATGAAAATAGTAACAAAGCAATAGGAGAGGGAGTCTCAAGTTTAGGGAGCTTAAACTCTTCATTAGGAGTGAGTTTTCTGAGAGTCTCTCTTTAGAAGTTATCTATTAGATAAATACTTGATTGTAATTACTTAACTTTTATTAGTGAAGATTTTTTCATCAGCCACATTGCCCCATACGTAGGTATCGTAAGTATGATTACACCAAACTGGGTTATCAACTTATGTGTGTTTATCTTTATATTATTGTTATTCTCACAATTTGATTCATTATCTCTTACATTGTTTATAACATTGTGTTGACTTGTGTAGTCGCATATTACCTATAAATTTCAATATTGATATGAGTTCTTATATATATAAAAGCTAACATAAAGAAAACAGAAAGGAAAATAAAATATATATCTAACGAGAAAGAAAGAACCTCCAAAAAAAGGGAGAAAATGAATTTTTTTTTCTTTTTTTGGAAAAAGCAAGTAATTTGCACGTGCTCCAACCAAGGTGTAATTGATGACCGGGGTCTACACTATTAGACCAAAGCAATATTATTAAAGGTTGATTGGATTAACTTAAAAAATAAATATTTTTTAAAATTTTATTTTTATTTAAATACTTTTGATAAGATCTCTTTAAAATAAAGACACTAATAATTTTTAAAATCAGTTTTATGATTGATTGTCAAATATCTGTATTTCTTTTCACATAACTTATTTTTTAAATTAAACACTTGATAAGTTCAAAGTTCAAATAAACCTGAATTTATTATGAATTTTGAAACCCGGGTCTAAGTAAATATGAAGACGACAACAAAAAAAATATGAATTTTGAATTTGAACTTTTTGTATAGTGTATAGGCTTTTGTATAAAAGAAAATATTTAAGTGTATCTCAAGTTACATTTATCCTTACACAGTTCATTTAGTTATCTAAATAATAATTGTAGCGTGCCAAAAGTTTTTTATTTTAAAAAAAAAATTAATGCATGAAGATAGATGTTATCATAAGAAATTTAGATGATTAGATTCTCACTATAAATTAAAAAGTGAAAATATTTATGTATACAAGATGAATATTAATTCTCTCTTTTATTAGTTTTAAAGATGACATATATAGATATTTTTGAAAATGTGGGGAGTTGGATTGCTTACTTAGAAAGGAAATCATTTATTTATTATAATATACATAATAGTATACACATTGGAATGAGTAATAATTATTAACTTTTTTTTTTTTTTAATATATTATAGAGTTAGGTGATTTGAAGTATAGATTTATTGATTACAGATACATATTGTATGTCAATTGAATTACACTCCCTTTAATAATAAATTATAGACTTAAAGAACCAATTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAAAAAAAAAAAAAAAAAAGCCCAATACAACTTCAATTTGAAACGAAAAAAAATTCGGACGTGAAAGTCTAATCCAACGTCCTACCAAATTAGAAAAAGGAGTAATTAAACAAAACGACCCAATTGCCAAACCTCGGCCTTGGCCATTGGCATGTACCATTATAGGCCTACTTTTTGTAAGATCCAACTTATCACAGTTCCTCCGATTGGCTCAAATGAAATAGGAGACTCTAGGTTTACTCCTCTTATAAAATTATATCAATATGATTCATCATTTTTAGGTCAGATCTTGGACTACATGCCCCCTCAAGAAGATTAA

mRNA sequence

ATGCCTTCAATCAAGTCCCTTGCGGTTGCTGTTTGCTTTTTACTCTCTTTTTCCGCCATTCTCTCTGAAGGTCCAGTCGCCAGAAAGGATCTCGGGATTGACCTTGGAGGAGTCGGAGTTGGACTTGGAGCTGGAATTGGCTTAGGCTTAGGTGGAAGTGGTTCTGGCTCCGGTTCTGGCTCTGGGTCCAGTTCATCTTCATCTTCTTCATCATACTCCTCCAGCTCAAGCTCTGGGTCCGGAGCTGGGTCCGAAGCTGGCTCGTACGCAGGGTCTCGAGCAGGGTCAGGTTCGGGTGGAAACAGGAATGGAGGGTCTGGATCTGGTTCGGGATATGGTGGAGGTTGGGGCAGAGGAGGCGGCAATGGCGGCGGTGAAGGATATGGTGAAGCTCATGGCTATGGTGAGGGTCATGGTTATGGAGGAGGTCAGATCTTGGACTACATGCCCCCTCAAGAAGATTAA

Coding sequence (CDS)

ATGCCTTCAATCAAGTCCCTTGCGGTTGCTGTTTGCTTTTTACTCTCTTTTTCCGCCATTCTCTCTGAAGGTCCAGTCGCCAGAAAGGATCTCGGGATTGACCTTGGAGGAGTCGGAGTTGGACTTGGAGCTGGAATTGGCTTAGGCTTAGGTGGAAGTGGTTCTGGCTCCGGTTCTGGCTCTGGGTCCAGTTCATCTTCATCTTCTTCATCATACTCCTCCAGCTCAAGCTCTGGGTCCGGAGCTGGGTCCGAAGCTGGCTCGTACGCAGGGTCTCGAGCAGGGTCAGGTTCGGGTGGAAACAGGAATGGAGGGTCTGGATCTGGTTCGGGATATGGTGGAGGTTGGGGCAGAGGAGGCGGCAATGGCGGCGGTGAAGGATATGGTGAAGCTCATGGCTATGGTGAGGGTCATGGTTATGGAGGAGGTCAGATCTTGGACTACATGCCCCCTCAAGAAGATTAA

Protein sequence

MPSIKSLAVAVCFLLSFSAILSEGPVARKDLGIDLGGVGVGLGAGIGLGLGGSGSGSGSGSGSSSSSSSSSYSSSSSSGSGAGSEAGSYAGSRAGSGSGGNRNGGSGSGSGYGGGWGRGGGNGGGEGYGEAHGYGEGHGYGGGQILDYMPPQED

Homology

[Close]

BLAST of CcUC06G122610 vs. NCBI nr
Match: XP_038879748.1 (glycine-rich cell wall structural protein 2-like [Benincasa hispida])

HSP 1 Score: 179.1 bits (453), Expect = 2.9e-41
Identity = 134/145 (92.41%), Postives = 135/145 (93.10%), Query Frame = 0


Query: 1   MPSIKSLAVAVCFLLSFSAILSEGPVARKDLGIDLGGVGVGLGAGIGLGLGGSGSGSGSG 60
           M SIKSLAV VCFLLSFSAILSEG VARKDLGIDLGGVGVGLGAGIGLGLGGSGSGSGSG
Sbjct: 1   MASIKSLAVVVCFLLSFSAILSEGRVARKDLGIDLGGVGVGLGAGIGLGLGGSGSGSGSG 60

Query: 61  SGSSSSSSSSSYSSSSSSGSGAGSEAGSYAGSRAGS--GSGGNRNGGSGSGSGYGGGWGR 120
           SGSSSSSSS S SSSSSSGSGAGSEAGSYAGS AGS  GSGGNRNGGSGSG+GYGGG GR
Sbjct: 61  SGSSSSSSSYSSSSSSSSGSGAGSEAGSYAGSYAGSRAGSGGNRNGGSGSGTGYGGGSGR 120

Query: 121 GGGNGGGEGYGEAHGYGEGHGYGGG 144
           GGGNGGGEGYGE HGYGEGHGYGGG
Sbjct: 121 GGGNGGGEGYGEGHGYGEGHGYGGG 145

[Close]

BLAST of CcUC06G122610 vs. NCBI nr
Match: XP_008443813.1 (PREDICTED: glycine-rich cell wall structural protein 2-like [Cucumis melo])

HSP 1 Score: 165.2 bits (417), Expect = 4.3e-37
Identity = 128/151 (84.77%), Postives = 131/151 (86.75%), Query Frame = 0


Query: 1   MPSIKSLAVAVCFLLSFSAILSEGPVARKDLGIDLGGVGVGLGAGIGLGLG----GSGSG 60
           M SIKSLA+ VC LLSFS  LSEG VARKDLGIDLGG+GVGLGAGIGLG+G    GSGSG
Sbjct: 1   MASIKSLALVVCLLLSFSVFLSEGRVARKDLGIDLGGLGVGLGAGIGLGIGGSGSGSGSG 60

Query: 61  SGSGSGSSSSSSSSSYSSSSSSGSGAGSE----AGSYAGSRAGSGSGGNRNGGSGSGSGY 120
           SGSGSGS SSSSSSSYSSSSSSGSGAGSE    AGSYAGSRAGSGSGGNRNGGSG GSGY
Sbjct: 61  SGSGSGSGSSSSSSSYSSSSSSGSGAGSEAGSYAGSYAGSRAGSGSGGNRNGGSGYGSGY 120

Query: 121 GGGWGRGGGNGGGEGYGEAHGYGEGHGYGGG 144
           GGG GRGG NG GEGYGE HGYGEGHGYGGG
Sbjct: 121 GGGSGRGGSNGNGEGYGEGHGYGEGHGYGGG 151

[Close]

BLAST of CcUC06G122610 vs. NCBI nr
Match: XP_004146660.2 (glycine-rich cell wall structural protein 2 [Cucumis sativus] >KGN65265.1 hypothetical protein Csa_020101 [Cucumis sativus])

HSP 1 Score: 160.6 bits (405), Expect = 1.1e-35
Identity = 129/152 (84.87%), Postives = 131/152 (86.18%), Query Frame = 0


Query: 1   MPSIKSLAVAVCFLLSFSAILSEGPVARKDLGIDLGGVGVGLGAGIGLGLG----GSGSG 60
           M SIKSLA+ VC LLSFSAILSEG VARKDLGIDLGGVGVGLG GIGLG+G    GSGSG
Sbjct: 1   MASIKSLAIVVCLLLSFSAILSEGRVARKDLGIDLGGVGVGLGTGIGLGIGGSGSGSGSG 60

Query: 61  SGSGSGSSSSSSSSSYSSSSSSGSGAGSE----AGSYAGSRAGSGSGGNRNGGSGSGSGY 120
           SGSGSGS SSSSSSSYSSSSSSGSGAGSE    AGSYAGSRAGSGSGGNRNGGSG GSGY
Sbjct: 61  SGSGSGSGSSSSSSSYSSSSSSGSGAGSEAGSYAGSYAGSRAGSGSGGNRNGGSGYGSGY 120

Query: 121 GGGWGRGGG-NGGGEGYGEAHGYGEGHGYGGG 144
           GGG GRGGG N  GEGYGE HGYGEG GYGGG
Sbjct: 121 GGGSGRGGGSNDNGEGYGEGHGYGEGRGYGGG 152

[Close]

BLAST of CcUC06G122610 vs. NCBI nr
Match: XP_022921883.1 (putative glycine-rich cell wall structural protein 1 isoform X3 [Cucurbita moschata])

HSP 1 Score: 159.8 bits (403), Expect = 1.8e-35
Identity = 124/149 (83.22%), Postives = 129/149 (86.58%), Query Frame = 0


Query: 1   MPSIKSLAVAVCFLLSFSAILSEGPVARKDLGIDLGGVGVGLGAGIGLGLG------GSG 60
           M SI SL + VCFLLSFS ILS+  VARKDLG+DLGG+GVG+G GIGLGLG      GSG
Sbjct: 1   MASINSL-IVVCFLLSFSVILSQARVARKDLGLDLGGLGVGIGTGIGLGLGGSGSGSGSG 60

Query: 61  SGSGSGSGSSSSSSSSSYSSSSSSGSGAGSEAGSYAGSRAGSGSGGNRNGGSGSGSGYGG 120
           SGSGSGSGSSSSSSSSSYSSSS SGSGAGSEAGSYAGSRAGSGSG NRNGGSGSGSGYGG
Sbjct: 61  SGSGSGSGSSSSSSSSSYSSSSGSGSGAGSEAGSYAGSRAGSGSGPNRNGGSGSGSGYGG 120

Query: 121 GWGRGGGNGGGEGYGEAHGYGEGHGYGGG 144
           G GRG GNGGGEGYGE HGYGEG GYGGG
Sbjct: 121 GSGRGSGNGGGEGYGEGHGYGEGRGYGGG 148

[Close]

BLAST of CcUC06G122610 vs. NCBI nr
Match: XP_023515819.1 (putative glycine-rich cell wall structural protein 1 isoform X3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 157.9 bits (398), Expect = 6.9e-35
Identity = 123/149 (82.55%), Postives = 129/149 (86.58%), Query Frame = 0


Query: 1   MPSIKSLAVAVCFLLSFSAILSEGPVARKDLGIDLGGVGVGLGAGIGLGLG------GSG 60
           M SI SL + VCFLLSFSAI+S+  VARKDLG+DLGG+GVG+G GIGLGLG      GSG
Sbjct: 1   MASINSL-IVVCFLLSFSAIVSQARVARKDLGLDLGGLGVGIGTGIGLGLGGSGSGSGSG 60

Query: 61  SGSGSGSGSSSSSSSSSYSSSSSSGSGAGSEAGSYAGSRAGSGSGGNRNGGSGSGSGYGG 120
           SGSGSGSGSSSSSSSSSYSSSS SGSGAGSEAGSYAGSRAGS SG NRNGGSGSGSGYGG
Sbjct: 61  SGSGSGSGSSSSSSSSSYSSSSGSGSGAGSEAGSYAGSRAGSASGRNRNGGSGSGSGYGG 120

Query: 121 GWGRGGGNGGGEGYGEAHGYGEGHGYGGG 144
           G GRG GNGGGEGYGE HGYGEG GYGGG
Sbjct: 121 GSGRGSGNGGGEGYGEGHGYGEGRGYGGG 148

[Close]

BLAST of CcUC06G122610 vs. ExPASy TrEMBL
Match: A0A1S3B9N0 (glycine-rich cell wall structural protein 2-like OS=Cucumis melo OX=3656 GN=LOC103487316 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 2.1e-37
Identity = 128/151 (84.77%), Postives = 131/151 (86.75%), Query Frame = 0


Query: 1   MPSIKSLAVAVCFLLSFSAILSEGPVARKDLGIDLGGVGVGLGAGIGLGLG----GSGSG 60
           M SIKSLA+ VC LLSFS  LSEG VARKDLGIDLGG+GVGLGAGIGLG+G    GSGSG
Sbjct: 1   MASIKSLALVVCLLLSFSVFLSEGRVARKDLGIDLGGLGVGLGAGIGLGIGGSGSGSGSG 60

Query: 61  SGSGSGSSSSSSSSSYSSSSSSGSGAGSE----AGSYAGSRAGSGSGGNRNGGSGSGSGY 120
           SGSGSGS SSSSSSSYSSSSSSGSGAGSE    AGSYAGSRAGSGSGGNRNGGSG GSGY
Sbjct: 61  SGSGSGSGSSSSSSSYSSSSSSGSGAGSEAGSYAGSYAGSRAGSGSGGNRNGGSGYGSGY 120

Query: 121 GGGWGRGGGNGGGEGYGEAHGYGEGHGYGGG 144
           GGG GRGG NG GEGYGE HGYGEGHGYGGG
Sbjct: 121 GGGSGRGGSNGNGEGYGEGHGYGEGHGYGGG 151

[Close]

BLAST of CcUC06G122610 vs. ExPASy TrEMBL
Match: A0A0A0LTK9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G278500 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 5.2e-36
Identity = 129/152 (84.87%), Postives = 131/152 (86.18%), Query Frame = 0


Query: 1   MPSIKSLAVAVCFLLSFSAILSEGPVARKDLGIDLGGVGVGLGAGIGLGLG----GSGSG 60
           M SIKSLA+ VC LLSFSAILSEG VARKDLGIDLGGVGVGLG GIGLG+G    GSGSG
Sbjct: 1   MASIKSLAIVVCLLLSFSAILSEGRVARKDLGIDLGGVGVGLGTGIGLGIGGSGSGSGSG 60

Query: 61  SGSGSGSSSSSSSSSYSSSSSSGSGAGSE----AGSYAGSRAGSGSGGNRNGGSGSGSGY 120
           SGSGSGS SSSSSSSYSSSSSSGSGAGSE    AGSYAGSRAGSGSGGNRNGGSG GSGY
Sbjct: 61  SGSGSGSGSSSSSSSYSSSSSSGSGAGSEAGSYAGSYAGSRAGSGSGGNRNGGSGYGSGY 120

Query: 121 GGGWGRGGG-NGGGEGYGEAHGYGEGHGYGGG 144
           GGG GRGGG N  GEGYGE HGYGEG GYGGG
Sbjct: 121 GGGSGRGGGSNDNGEGYGEGHGYGEGRGYGGG 152

[Close]

BLAST of CcUC06G122610 vs. ExPASy TrEMBL
Match: A0A6J1E521 (putative glycine-rich cell wall structural protein 1 isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111430014 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 8.8e-36
Identity = 124/149 (83.22%), Postives = 129/149 (86.58%), Query Frame = 0


Query: 1   MPSIKSLAVAVCFLLSFSAILSEGPVARKDLGIDLGGVGVGLGAGIGLGLG------GSG 60
           M SI SL + VCFLLSFS ILS+  VARKDLG+DLGG+GVG+G GIGLGLG      GSG
Sbjct: 1   MASINSL-IVVCFLLSFSVILSQARVARKDLGLDLGGLGVGIGTGIGLGLGGSGSGSGSG 60

Query: 61  SGSGSGSGSSSSSSSSSYSSSSSSGSGAGSEAGSYAGSRAGSGSGGNRNGGSGSGSGYGG 120
           SGSGSGSGSSSSSSSSSYSSSS SGSGAGSEAGSYAGSRAGSGSG NRNGGSGSGSGYGG
Sbjct: 61  SGSGSGSGSSSSSSSSSYSSSSGSGSGAGSEAGSYAGSRAGSGSGPNRNGGSGSGSGYGG 120

Query: 121 GWGRGGGNGGGEGYGEAHGYGEGHGYGGG 144
           G GRG GNGGGEGYGE HGYGEG GYGGG
Sbjct: 121 GSGRGSGNGGGEGYGEGHGYGEGRGYGGG 148

[Close]

BLAST of CcUC06G122610 vs. ExPASy TrEMBL
Match: A0A6J1E2L1 (cell wall protein IFF6-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111430014 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 2.0e-32
Identity = 124/169 (73.37%), Postives = 129/169 (76.33%), Query Frame = 0


Query: 1   MPSIKSLAVAVCFLLSFSAILSEGPVARKDLGIDLGGVGVGLGAGIGLGLG------GSG 60
           M SI SL + VCFLLSFS ILS+  VARKDLG+DLGG+GVG+G GIGLGLG      GSG
Sbjct: 1   MASINSL-IVVCFLLSFSVILSQARVARKDLGLDLGGLGVGIGTGIGLGLGGSGSGSGSG 60

Query: 61  SGSGSGSGSSSSSSSSSYSSSSSSGSGAGSEAGSYAGSRAGSGSGG-------------- 120
           SGSGSGSGSSSSSSSSSYSSSS SGSGAGSEAGSYAGSRAGSGSG               
Sbjct: 61  SGSGSGSGSSSSSSSSSYSSSSGSGSGAGSEAGSYAGSRAGSGSGSGAGSEAGSYAGSRA 120

Query: 121 ------NRNGGSGSGSGYGGGWGRGGGNGGGEGYGEAHGYGEGHGYGGG 144
                 NRNGGSGSGSGYGGG GRG GNGGGEGYGE HGYGEG GYGGG
Sbjct: 121 GSGSGPNRNGGSGSGSGYGGGSGRGSGNGGGEGYGEGHGYGEGRGYGGG 168

[Close]

BLAST of CcUC06G122610 vs. ExPASy TrEMBL
Match: A0A6J1JK06 (putative glycine-rich cell wall structural protein 1 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111485793 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 1.7e-26
Identity = 104/145 (71.72%), Postives = 111/145 (76.55%), Query Frame = 0


Query: 1   MPSIKSLAVAVCFLLSFSAILSEGPVARKDLGIDLGGVGVGLGAGIGLGLG--GSGSGSG 60
           M S  +L V +CFLLSFSAI+S+  VARKDLG+DLGG+GVG+G GIGLGLG  GSGSGSG
Sbjct: 1   MASFNTLLV-LCFLLSFSAIVSQARVARKDLGLDLGGLGVGIGTGIGLGLGGSGSGSGSG 60

Query: 61  SGSGSSSSSSSSSYSSSSSSGSGAGSEAGSYAGSRAGSGSGGNRNGGSGSGSGYGGGWGR 120
           SGSGS SSSSSSSYSSSSSSGSGAGSEAGSYAGSRAGSGSG NRN               
Sbjct: 61  SGSGSGSSSSSSSYSSSSSSGSGAGSEAGSYAGSRAGSGSGRNRN--------------- 120

Query: 121 GGGNGGGEGYGEAHGYGEGHGYGGG 144
                GGEGYGE HGYGEG GYGGG
Sbjct: 121 -----GGEGYGEGHGYGEGRGYGGG 124

[Close]

BLAST of CcUC06G122610 vs. TAIR 10
Match: AT4G30460.1 (glycine-rich protein )

HSP 1 Score: 97.4 bits (241), Expect = 1.0e-20
Identity = 96/149 (64.43%), Postives = 109/149 (73.15%), Query Frame = 0


Query: 6   SLAVAVCFLLSFSAILSEGPVARKDLGIDLGGVGVGLGAGIGLGLGGSGSGSGSGSGS-- 65
           S  + +  +L+ S ++SE  VARKDLG+DLGG+G G+G GIG+G GGSGSG+G+GSGS  
Sbjct: 8   SSLILITLILATSVLVSESRVARKDLGLDLGGIGAGIGIGIGIGGGGSGSGAGAGSGSGG 67

Query: 66  --SSSSSSSSYSSSSSSGSG---AGSEAGSYAGSRAGSGSGG----NRNGGSGSGSGYGG 125
             SSSSSSSS SSSSSSG G   AGSEAGSYAGS AGSGSGG     R  GSG G G+GG
Sbjct: 68  GGSSSSSSSSSSSSSSSGGGGGDAGSEAGSYAGSHAGSGSGGRSGSGRGRGSGGGGGHGG 127

Query: 126 GWGRGGGNGGGEGYGEAHGYGEGHGYGGG 144
           G G GGG GGG G G   GYGEG GYGGG
Sbjct: 128 GGGGGGGRGGGGGSGNGEGYGEGGGYGGG 156

[Close]

BLAST of CcUC06G122610 vs. TAIR 10
Match: AT4G30450.1 (glycine-rich protein )

HSP 1 Score: 74.3 bits (181), Expect = 9.4e-14
Identity = 67/106 (63.21%), Postives = 81/106 (76.42%), Query Frame = 0


Query: 1   MPSIKSLAVAVCFLLSFSAILSEGPVARKDLGIDLGGVGVGLGAGIGLGLG-----GSGS 60
           M   + L +    ++S   +L+E  +ARKDLGIDLGG+G+GLG G+G+GLG     G+G+
Sbjct: 1   MAKAEGLFLLGLVVISSLVMLTESRLARKDLGIDLGGIGIGLGVGLGIGLGGGSGSGAGA 60

Query: 61  GSGSGSGSSSSSSSSSYSSSSSSGSG--AGSEAGSYAGSRAGSGSG 100
           GSGSGSGS SSSSSSS SSSSSSGSG  AGS AGS+AGSRAGSGSG
Sbjct: 61  GSGSGSGSRSSSSSSSSSSSSSSGSGGSAGSSAGSFAGSRAGSGSG 106

The following BLAST results are available for this feature:

BLAST of CcUC06G122610 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038879748.1	2.9e-41	92.41	glycine-rich cell wall structural protein 2-like [Benincasa hispida]	[more]
XP_008443813.1	4.3e-37	84.77	PREDICTED: glycine-rich cell wall structural protein 2-like [Cucumis melo]	[more]
XP_004146660.2	1.1e-35	84.87	glycine-rich cell wall structural protein 2 [Cucumis sativus] >KGN65265.1 hypoth...	[more]
XP_022921883.1	1.8e-35	83.22	putative glycine-rich cell wall structural protein 1 isoform X3 [Cucurbita mosch...	[more]
XP_023515819.1	6.9e-35	82.55	putative glycine-rich cell wall structural protein 1 isoform X3 [Cucurbita pepo ...	[more]

BLAST of CcUC06G122610 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC06G122610 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3B9N0	2.1e-37	84.77	glycine-rich cell wall structural protein 2-like OS=Cucumis melo OX=3656 GN=LOC1...	[more]
A0A0A0LTK9	5.2e-36	84.87	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G278500 PE=4 SV=1	[more]
A0A6J1E521	8.8e-36	83.22	putative glycine-rich cell wall structural protein 1 isoform X3 OS=Cucurbita mos...	[more]
A0A6J1E2L1	2.0e-32	73.37	cell wall protein IFF6-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC11143...	[more]
A0A6J1JK06	1.7e-26	71.72	putative glycine-rich cell wall structural protein 1 isoform X2 OS=Cucurbita max...	[more]

BLAST of CcUC06G122610 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G30460.1	1.0e-20	64.43	glycine-rich protein	[more]
AT4G30450.1	9.4e-14	63.21	glycine-rich protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 52..154
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 54..85
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 94..108
None	No IPR available	PANTHER	PTHR38934:SF13	GLYCINE-RICH CELL WALL STRUCTURAL PROTEIN 1-RELATED	coord: 1..143
None	No IPR available	PANTHER	PTHR38934	HYPHALLY REGULATED CELL WALL PROTEIN 1	coord: 1..143

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC06G122610.1	CcUC06G122610.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane