CcUC06G121560 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC06G121560
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Unknown protein
Location	CicolChr06: 23987951 .. 23988454 (+)
RNA-Seq Expression	CcUC06G121560
Synteny	CcUC06G121560

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTGTTTCCTTTGCCAAAAAATGGTTACCTAAACAATATAATTGCAGTTTTCAATTGCAATAATGACCCCAAATGTTTCAAAATTTAATATCTTCCCCTATATCTAACCTTCCTTGGTCCCCCATTTTCTCCCACCAACCAAACACAGCCCCTCCCTCAACCCACAAAAACAAACACACACACCTAATTCAATCCTTCTTGAACCTTAGCTTTTACACACCCAAATTGAAACCATGGCGTCATTTAATGCATCTACAATGAAGTTACAACTTGTATTCTTCGTCTGCATAGTCATTTTAGCATCACCCCACGTTGCCTGATTCGACCACATTAGAAGATTTCTCATTGTTGGACTGCACATCATTTATTTTCAAGGGGACAAGATGTGTGATTGATGTGATGAAGAACGCTGTTGCTCCTCATCCGTCATGTTGCAAAGCCATTTCTAAGCTTAACGATTGTCCTTTGAGTTTCTCAAAGACATTCCATCTGCTGACATGA

mRNA sequence

ATGACTCATCACCCCACGTTGCCTGATTCGACCACATTAGAAGATTTCTCATTGTTGGACTGCACATCATTTATTTTCAAGGGGACAAGATGTGTGATTGATGTGATGAAGAACGCTGTTGCTCCTCATCCGTCATGTTGCAAAGCCATTTCTAAGCTTAACGATTGTCCTTTGAGTTTCTCAAAGACATTCCATCTGCTGACATGA

Coding sequence (CDS)

ATGACTCATCACCCCACGTTGCCTGATTCGACCACATTAGAAGATTTCTCATTGTTGGACTGCACATCATTTATTTTCAAGGGGACAAGATGTGTGATTGATGTGATGAAGAACGCTGTTGCTCCTCATCCGTCATGTTGCAAAGCCATTTCTAAGCTTAACGATTGTCCTTTGAGTTTCTCAAAGACATTCCATCTGCTGACATGA

Protein sequence

MTHHPTLPDSTTLEDFSLLDCTSFIFKGTRCVIDVMKNAVAPHPSCCKAISKLNDCPLSFSKTFHLLT

Homology

[Close]

BLAST of CcUC06G121560 vs. NCBI nr
Match: KAE8653021.1 (hypothetical protein Csa_004567 [Cucumis sativus])

HSP 1 Score: 84.3 bits (207), Expect = 4.3e-13
Identity = 38/54 (70.37%), Postives = 42/54 (77.78%), Query Frame = 0


Query: 9  DSTTLEDFSLLDCTSFIFKGTRCVIDVMKNAVAPHPSCCKAISKLNDCPLSFSK 63
          D  T E+FSLL CTSFI + T C++DVMKNAVAPHPSCCKA SKLNDC   F K
Sbjct: 32 DPFTAEEFSLLGCTSFISEATNCMVDVMKNAVAPHPSCCKAFSKLNDCSSEFLK 85

[Close]

BLAST of CcUC06G121560 vs. NCBI nr
Match: TYK10330.1 (hypothetical protein E5676_scaffold367G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 84.0 bits (206), Expect = 5.6e-13
Identity = 39/54 (72.22%), Postives = 42/54 (77.78%), Query Frame = 0


Query: 9  DSTTLEDFSLLDCTSFIFKGTRCVIDVMKNAVAPHPSCCKAISKLNDCPLSFSK 63
          D  T E+ SLL CTSFI + T+CVIDVMKNAVAPHPSCCKA SKLNDC   F K
Sbjct: 32 DPFTAEELSLLGCTSFISEATKCVIDVMKNAVAPHPSCCKAFSKLNDCSPEFLK 85

[Close]

BLAST of CcUC06G121560 vs. NCBI nr
Match: KAA0050078.1 (hypothetical protein E6C27_scaffold675G00620 [Cucumis melo var. makuwa])

HSP 1 Score: 82.8 bits (203), Expect = 1.3e-12
Identity = 39/54 (72.22%), Postives = 41/54 (75.93%), Query Frame = 0


Query: 9  DSTTLEDFSLLDCTSFIFKGTRCVIDVMKNAVAPHPSCCKAISKLNDCPLSFSK 63
          D  T E  SLL CTSFI + T+CVIDVMKNAVAPHPSCCKA SKLNDC   F K
Sbjct: 32 DPFTAEKLSLLGCTSFISEATKCVIDVMKNAVAPHPSCCKAFSKLNDCSPEFLK 85

[Close]

BLAST of CcUC06G121560 vs. NCBI nr
Match: TYK10345.1 (hypothetical protein E5676_scaffold367G00210 [Cucumis melo var. makuwa])

HSP 1 Score: 79.3 bits (194), Expect = 1.4e-11
Identity = 38/64 (59.38%), Postives = 47/64 (73.44%), Query Frame = 0


Query: 1  MTHHPTL--PDSTTLEDFSLLDCTSFIFKGTRCVIDVMKNAVAPHPSCCKAISKLNDCPL 60
          +T  PT+    + T EDFSL  C SF+ K T+CVIDV+KNAVAPHPSCC+AIS+L+DC  
Sbjct: 24 VTARPTIVAAATPTSEDFSLFPCISFVPKATKCVIDVLKNAVAPHPSCCEAISQLHDCSS 83

Query: 61 SFSK 63
           F K
Sbjct: 84 QFLK 87

[Close]

BLAST of CcUC06G121560 vs. NCBI nr
Match: KAA0050079.1 (hypothetical protein E6C27_scaffold675G00630 [Cucumis melo var. makuwa])

HSP 1 Score: 75.9 bits (185), Expect = 1.5e-10
Identity = 33/51 (64.71%), Postives = 40/51 (78.43%), Query Frame = 0


Query: 12 TLEDFSLLDCTSFIFKGTRCVIDVMKNAVAPHPSCCKAISKLNDCPLSFSK 63
          T EDFSL  C SF+ K T+CVIDV+KN VAPHPSCC+AI++L+DC   F K
Sbjct: 37 TSEDFSLFPCISFVPKATKCVIDVLKNVVAPHPSCCEAITQLHDCSSQFLK 87

[Close]

BLAST of CcUC06G121560 vs. ExPASy TrEMBL
Match: A0A5D3CG41 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00010 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 2.7e-13
Identity = 39/54 (72.22%), Postives = 42/54 (77.78%), Query Frame = 0


Query: 9  DSTTLEDFSLLDCTSFIFKGTRCVIDVMKNAVAPHPSCCKAISKLNDCPLSFSK 63
          D  T E+ SLL CTSFI + T+CVIDVMKNAVAPHPSCCKA SKLNDC   F K
Sbjct: 32 DPFTAEELSLLGCTSFISEATKCVIDVMKNAVAPHPSCCKAFSKLNDCSPEFLK 85

[Close]

BLAST of CcUC06G121560 vs. ExPASy TrEMBL
Match: A0A5A7U483 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G00620 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 6.1e-13
Identity = 39/54 (72.22%), Postives = 41/54 (75.93%), Query Frame = 0


Query: 9  DSTTLEDFSLLDCTSFIFKGTRCVIDVMKNAVAPHPSCCKAISKLNDCPLSFSK 63
          D  T E  SLL CTSFI + T+CVIDVMKNAVAPHPSCCKA SKLNDC   F K
Sbjct: 32 DPFTAEKLSLLGCTSFISEATKCVIDVMKNAVAPHPSCCKAFSKLNDCSPEFLK 85

[Close]

BLAST of CcUC06G121560 vs. ExPASy TrEMBL
Match: A0A5D3CFS6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00210 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 6.7e-12
Identity = 38/64 (59.38%), Postives = 47/64 (73.44%), Query Frame = 0


Query: 1  MTHHPTL--PDSTTLEDFSLLDCTSFIFKGTRCVIDVMKNAVAPHPSCCKAISKLNDCPL 60
          +T  PT+    + T EDFSL  C SF+ K T+CVIDV+KNAVAPHPSCC+AIS+L+DC  
Sbjct: 24 VTARPTIVAAATPTSEDFSLFPCISFVPKATKCVIDVLKNAVAPHPSCCEAISQLHDCSS 83

Query: 61 SFSK 63
           F K
Sbjct: 84 QFLK 87

[Close]

BLAST of CcUC06G121560 vs. ExPASy TrEMBL
Match: A0A5A7U9B0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G00630 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 7.4e-11
Identity = 33/51 (64.71%), Postives = 40/51 (78.43%), Query Frame = 0


Query: 12 TLEDFSLLDCTSFIFKGTRCVIDVMKNAVAPHPSCCKAISKLNDCPLSFSK 63
          T EDFSL  C SF+ K T+CVIDV+KN VAPHPSCC+AI++L+DC   F K
Sbjct: 37 TSEDFSLFPCISFVPKATKCVIDVLKNVVAPHPSCCEAITQLHDCSSQFLK 87

[Close]

BLAST of CcUC06G121560 vs. ExPASy TrEMBL
Match: A0A5D3CEQ4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00180 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.8e-10
Identity = 34/62 (54.84%), Postives = 42/62 (67.74%), Query Frame = 0


Query: 1  MTHHPTLPDSTTLEDFSLLDCTSFIFKGTRCVIDVMKNAVAPHPSCCKAISKLNDCPLSF 60
          M    T+  +  + D SL  C SF+ K T CVIDV+KNAVAPHPSCC+AIS+L+DC   F
Sbjct: 24 MARPVTVAAAAPIGDISLFPCKSFVPKATECVIDVLKNAVAPHPSCCQAISELHDCSSQF 83

Query: 61 SK 63
           K
Sbjct: 84 LK 85

The following BLAST results are available for this feature:

BLAST of CcUC06G121560 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8653021.1	4.3e-13	70.37	hypothetical protein Csa_004567 [Cucumis sativus]	[more]
TYK10330.1	5.6e-13	72.22	hypothetical protein E5676_scaffold367G00010 [Cucumis melo var. makuwa]	[more]
KAA0050078.1	1.3e-12	72.22	hypothetical protein E6C27_scaffold675G00620 [Cucumis melo var. makuwa]	[more]
TYK10345.1	1.4e-11	59.38	hypothetical protein E5676_scaffold367G00210 [Cucumis melo var. makuwa]	[more]
KAA0050079.1	1.5e-10	64.71	hypothetical protein E6C27_scaffold675G00630 [Cucumis melo var. makuwa]	[more]

BLAST of CcUC06G121560 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC06G121560 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CG41	2.7e-13	72.22	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7U483	6.1e-13	72.22	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3CFS6	6.7e-12	59.38	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7U9B0	7.4e-11	64.71	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3CEQ4	2.8e-10	54.84	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of CcUC06G121560 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC06G121560.1	CcUC06G121560.1	mRNA