CcUC06G121460 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC06G121460
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionUnknown protein
LocationCicolChr06: 23947774 .. 23948027 (+)
RNA-Seq ExpressionCcUC06G121460
SyntenyCcUC06G121460
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGTTAACACTTATATTCCATGTCTGCATATTCATTTTAGCACCATCAATGACGATCCACACAATGACAACAACAGTCTATTAGTATTTGAGGATCTCTCTTTCTCAAACTGCACACCCTTTATTTTAGAAGCGACAATGTATGTGGTAGATGTGATCAAGCTTCCAATTGGTCCTCATCCATCTTGTTGCAAAGCAATTCTAAGTTTAACGACTGTTCTCCTGAAATTTATCAACATATTCTTGGCATGA

mRNA sequence

ATGAGCACCATCAATGACGATCCACACAATGACAACAACAGTCTATTAGTATTTGAGGATCTCTCTTTCTCAAACTGCACACCCTTTATTTTAGAAGCGACAATGTATGTGGTAGATGTGATCAAGCTTCCAATTGGTCCTCATCCATCTTGTTGCAAAGCAATTCTAAGTTTAACGACTGTTCTCCTGAAATTTATCAACATATTCTTGGCATGA

Coding sequence (CDS)

ATGAGCACCATCAATGACGATCCACACAATGACAACAACAGTCTATTAGTATTTGAGGATCTCTCTTTCTCAAACTGCACACCCTTTATTTTAGAAGCGACAATGTATGTGGTAGATGTGATCAAGCTTCCAATTGGTCCTCATCCATCTTGTTGCAAAGCAATTCTAAGTTTAACGACTGTTCTCCTGAAATTTATCAACATATTCTTGGCATGA

Protein sequence

MSTINDDPHNDNNSLLVFEDLSFSNCTPFILEATMYVVDVIKLPIGPHPSCCKAILSLTTVLLKFINIFLA
Homology
BLAST of CcUC06G121460 vs. NCBI nr
Match: KAA0050068.1 (hypothetical protein E6C27_scaffold675G00490 [Cucumis melo var. makuwa])

HSP 1 Score: 73.2 bits (178), Expect = 1.0e-09
Identity = 34/45 (75.56%), Postives = 36/45 (80.00%), Query Frame = 0

Query: 14 SLLVFEDLSFSNCTPFILEATMYVVDVIKLPIGPHPSCCKAILSL 59
          S L  EDLSFSNCTPFIL+ATM VV VIK P+ PHPSCCKAI  L
Sbjct: 39 SPLALEDLSFSNCTPFILDATMCVVSVIKFPVAPHPSCCKAISDL 83

BLAST of CcUC06G121460 vs. NCBI nr
Match: KAA0050064.1 (hypothetical protein E6C27_scaffold675G00450 [Cucumis melo var. makuwa])

HSP 1 Score: 70.9 bits (172), Expect = 5.1e-09
Identity = 32/44 (72.73%), Postives = 37/44 (84.09%), Query Frame = 0

Query: 15 LLVFEDLSFSNCTPFILEATMYVVDVIKLPIGPHPSCCKAILSL 59
          +L+ +D SFSNC PFILEATM +VDVIKLP+ PHPSCCKAI  L
Sbjct: 43 VLLDQDSSFSNCAPFILEATMCMVDVIKLPVAPHPSCCKAISDL 86

BLAST of CcUC06G121460 vs. NCBI nr
Match: TYK10344.1 (hypothetical protein E5676_scaffold367G00200 [Cucumis melo var. makuwa])

HSP 1 Score: 70.9 bits (172), Expect = 5.1e-09
Identity = 32/44 (72.73%), Postives = 37/44 (84.09%), Query Frame = 0

Query: 15 LLVFEDLSFSNCTPFILEATMYVVDVIKLPIGPHPSCCKAILSL 59
          +L+ +D SFSNC PFILEATM +VDVIKLP+ PHPSCCKAI  L
Sbjct: 43 VLLDQDSSFSNCAPFILEATMCMVDVIKLPVAPHPSCCKAISDL 86

BLAST of CcUC06G121460 vs. NCBI nr
Match: KAE8653023.1 (hypothetical protein Csa_023561, partial [Cucumis sativus])

HSP 1 Score: 63.5 bits (153), Expect = 8.2e-07
Identity = 27/42 (64.29%), Postives = 33/42 (78.57%), Query Frame = 0

Query: 17 VFEDLSFSNCTPFILEATMYVVDVIKLPIGPHPSCCKAILSL 59
          + +DLSF +CTPFIL+AT+ +VDV K PI PHP CCKAI  L
Sbjct: 41 ISQDLSFFSCTPFILDATLCLVDVFKFPIAPHPFCCKAIFKL 82

BLAST of CcUC06G121460 vs. NCBI nr
Match: KAE8653020.1 (hypothetical protein Csa_004576, partial [Cucumis sativus] >KGN65427.2 hypothetical protein Csa_004566, partial [Cucumis sativus])

HSP 1 Score: 63.5 bits (153), Expect = 8.2e-07
Identity = 27/42 (64.29%), Postives = 33/42 (78.57%), Query Frame = 0

Query: 17 VFEDLSFSNCTPFILEATMYVVDVIKLPIGPHPSCCKAILSL 59
          + +DLSF +CTPFIL+AT+ +VDV K PI PHP CCKAI  L
Sbjct: 44 ISQDLSFFSCTPFILDATLCLVDVFKFPIAPHPFCCKAIFKL 85

BLAST of CcUC06G121460 vs. ExPASy TrEMBL
Match: A0A5A7U475 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G00490 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 5.0e-10
Identity = 34/45 (75.56%), Postives = 36/45 (80.00%), Query Frame = 0

Query: 14 SLLVFEDLSFSNCTPFILEATMYVVDVIKLPIGPHPSCCKAILSL 59
          S L  EDLSFSNCTPFIL+ATM VV VIK P+ PHPSCCKAI  L
Sbjct: 39 SPLALEDLSFSNCTPFILDATMCVVSVIKFPVAPHPSCCKAISDL 83

BLAST of CcUC06G121460 vs. ExPASy TrEMBL
Match: A0A5A7U4A7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G00450 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 2.5e-09
Identity = 32/44 (72.73%), Postives = 37/44 (84.09%), Query Frame = 0

Query: 15 LLVFEDLSFSNCTPFILEATMYVVDVIKLPIGPHPSCCKAILSL 59
          +L+ +D SFSNC PFILEATM +VDVIKLP+ PHPSCCKAI  L
Sbjct: 43 VLLDQDSSFSNCAPFILEATMCMVDVIKLPVAPHPSCCKAISDL 86

BLAST of CcUC06G121460 vs. ExPASy TrEMBL
Match: A0A5D3CGL7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00200 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 2.5e-09
Identity = 32/44 (72.73%), Postives = 37/44 (84.09%), Query Frame = 0

Query: 15 LLVFEDLSFSNCTPFILEATMYVVDVIKLPIGPHPSCCKAILSL 59
          +L+ +D SFSNC PFILEATM +VDVIKLP+ PHPSCCKAI  L
Sbjct: 43 VLLDQDSSFSNCAPFILEATMCMVDVIKLPVAPHPSCCKAISDL 86

BLAST of CcUC06G121460 vs. ExPASy TrEMBL
Match: A0A0A0LTD6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G263450 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 2.1e-08
Identity = 31/40 (77.50%), Postives = 33/40 (82.50%), Query Frame = 0

Query: 19 EDLSFSNCTPFILEATMYVVDVIKLPIGPHPSCCKAILSL 59
          +D SFSNC PFILEATM VVDVIKLP+  HPSCCKAI  L
Sbjct: 48 DDSSFSNCAPFILEATMCVVDVIKLPVASHPSCCKAISDL 87

BLAST of CcUC06G121460 vs. ExPASy TrEMBL
Match: A0A5A7U9A1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00160 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 7.5e-06
Identity = 26/40 (65.00%), Postives = 29/40 (72.50%), Query Frame = 0

Query: 19 EDLSFSNCTPFILEATMYVVDVIKLPIGPHPSCCKAILSL 59
          ++  F  C PFILEAT+ V DVIK PI PHPSCCKAI  L
Sbjct: 44 QNFPFLKCAPFILEATLCVTDVIKFPIAPHPSCCKAISKL 83

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0050068.11.0e-0975.56hypothetical protein E6C27_scaffold675G00490 [Cucumis melo var. makuwa][more]
KAA0050064.15.1e-0972.73hypothetical protein E6C27_scaffold675G00450 [Cucumis melo var. makuwa][more]
TYK10344.15.1e-0972.73hypothetical protein E5676_scaffold367G00200 [Cucumis melo var. makuwa][more]
KAE8653023.18.2e-0764.29hypothetical protein Csa_023561, partial [Cucumis sativus][more]
KAE8653020.18.2e-0764.29hypothetical protein Csa_004576, partial [Cucumis sativus] >KGN65427.2 hypotheti... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7U4755.0e-1075.56Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7U4A72.5e-0972.73Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3CGL72.5e-0972.73Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0LTD62.1e-0877.50Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G263450 PE=4 SV=1[more]
A0A5A7U9A17.5e-0665.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC06G121460.1CcUC06G121460.1mRNA