Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTGAATTCATTTTAGTGTGTGTGTGTGTGTTTCTTATCGTGCATGACCTGTTCTTCTAGAAGTCTTGGATTCCAAATTTTTGCAAATATAACAGGGAAGAACGACAACTTTGACGAGAAAGTGAGCAAAAAATTGACTAAATTCATCAAAGAGACCAATAAAAAAAACGAGGAAAAGTTCGAGGACTTACAACCAGAAGTAGACATATGGGAGACCCCTGAGTGCATGTTGAGGCAGCTATCTGAGCCTAACATGATCCAGCAGCCTCTGTGCATAGTCTACCCTGCCACCACCATACCATTTGAGGTTAAGACGGGCCTGATTTATCTGTTGCCTCAGTTTATTGGCAGGGCAGGGGAAGACCCTCACAAACACTTAAAGGACTTTCATGTTGTTTGTGAAGGCATGAGGCCCCATGGAGTCACAGAGGAACAACTAAATCTGAGAGCATTTCCCTTTTCTCTGAAGGAGGATGTAAAAGATCAGCTCTATTACCAGCCCCCCGGTTCGATCACTACATGGAACAAGATGAAGAAGTTGTTTCTTGATAAATATTTTTCAGCTTCAAAGGCTAACAACATCAGAAAGGAGATTTATGGCATAACCTAGAGGGTCAGGGAGACATTGTTCTATTATTGGGAGAGATAGAAGCAACTCTGATAACTTGTAAAAATACAATTTATTATAATATGTAGAGAATTTA
mRNA sequence
CTTGAATTCATTTTAGTGTGTGTGTGTGTGTTTCTTATCGTGCATGACCTGTTCTTCTAGAAGTCTTGGATTCCAAATTTTTGCAAATATAACAGGGAAGAACGACAACTTTGACGAGAAAGTGAGCAAAAAATTGACTAAATTCATCAAAGAGACCAATAAAAAAAACGAGGAAAAGTTCGAGGACTTACAACCAGAAGTAGACATATGGGAGACCCCTGAGTGCATGTTGAGGCAGCTATCTGAGCCTAACATGATCCAGCAGCCTCTGTGCATAGTCTACCCTGCCACCACCATACCATTTGAGGTTAAGACGGGCCTGATTTATCTGTTGCCTCAGTTTATTGGCAGGGCAGGGGAAGACCCTCACAAACACTTAAAGGACTTTCATGTTGTTTGTGAAGGCATGAGGCCCCATGGAGTCACAGAGGAACAACTAAATCTGAGAGCATTTCCCTTTTCTCTGAAGGAGGATGTAAAAGATCAGCTCTATTACCAGCCCCCCGGTTCGATCACTACATGGAACAAGATGAAGAAGTTGTTTCTTGATAAATATTTTTCAGCTTCAAAGGCTAACAACATCAGAAAGGAGATTTATGGCATAACCTAGAGGGTCAGGGAGACATTGTTCTATTATTGGGAGAGATAGAAGCAACTCTGATAACTTGTAAAAATACAATTTATTATAATATGTAGAGAATTTA
Coding sequence (CDS)
ATGTTGAGGCAGCTATCTGAGCCTAACATGATCCAGCAGCCTCTGTGCATAGTCTACCCTGCCACCACCATACCATTTGAGGTTAAGACGGGCCTGATTTATCTGTTGCCTCAGTTTATTGGCAGGGCAGGGGAAGACCCTCACAAACACTTAAAGGACTTTCATGTTGTTTGTGAAGGCATGAGGCCCCATGGAGTCACAGAGGAACAACTAAATCTGAGAGCATTTCCCTTTTCTCTGAAGGAGGATGTAAAAGATCAGCTCTATTACCAGCCCCCCGGTTCGATCACTACATGGAACAAGATGAAGAAGTTGTTTCTTGATAAATATTTTTCAGCTTCAAAGGCTAACAACATCAGAAAGGAGATTTATGGCATAACCTAG
Protein sequence
MLRQLSEPNMIQQPLCIVYPATTIPFEVKTGLIYLLPQFIGRAGEDPHKHLKDFHVVCEGMRPHGVTEEQLNLRAFPFSLKEDVKDQLYYQPPGSITTWNKMKKLFLDKYFSASKANNIRKEIYGIT
Homology
BLAST of CcUC06G120310 vs. NCBI nr
Match:
XP_022156327.1 (uncharacterized protein LOC111023248 [Momordica charantia])
HSP 1 Score: 184.5 bits (467), Expect = 5.7e-43
Identity = 85/126 (67.46%), Postives = 102/126 (80.95%), Query Frame = 0
Query: 2 LRQLSEPNMIQQPLCIVYPATTIPFEVKTGLIYLLPQFIGRAGEDPHKHLKDFHVVCEGM 61
L+QL+ P++ QQPLCI +P FE+K+ LI+LLP F AGEDPHKHLK+FH+VC M
Sbjct: 6 LKQLAAPDLNQQPLCITFPNIENDFELKSXLIHLLPIFRVCAGEDPHKHLKEFHIVCSXM 65
Query: 62 RPHGVTEEQLNLRAFPFSLKEDVKDQLYYQPPGSITTWNKMKKLFLDKYFSASKANNIRK 121
+PHGV E+Q+NLRAF FSLK+ KD LYY P GSITTWNKMK+LFLDK+F AS+A NIRK
Sbjct: 66 KPHGVXEQQINLRAFXFSLKDQAKDXLYYLPSGSITTWNKMKRLFLDKFFPASRAANIRK 125
Query: 122 EIYGIT 128
EIYGIT
Sbjct: 126 EIYGIT 131
BLAST of CcUC06G120310 vs. NCBI nr
Match:
KAA0058150.1 (uncharacterized protein E6C27_scaffold274G004630 [Cucumis melo var. makuwa])
HSP 1 Score: 184.1 bits (466), Expect = 7.5e-43
Identity = 85/126 (67.46%), Postives = 102/126 (80.95%), Query Frame = 0
Query: 1 MLRQLSEPNMIQQPLCIVYPATTIPFEVKTGLIYLLPQFIGRAGEDPHKHLKDFHVVCEG 60
+LR+L+EPN +PLCIV P TT PFE+K GLI+LLP F G +GEDPHKHLKDFH+VC+
Sbjct: 8 ILRELAEPNEDHRPLCIVIPPTTQPFELKPGLIHLLPIFKGSSGEDPHKHLKDFHMVCDS 67
Query: 61 MRPHGVTEEQLNLRAFPFSLKEDVKDQLYYQPPGSITTWNKMKKLFLDKYFSASKANNIR 120
MRP+ ++EEQLNLRAFPF L + K LYY PGSITTW +KK FL+K+F AS+ANNIR
Sbjct: 68 MRPYSISEEQLNLRAFPFFLTDVAKIWLYYLEPGSITTWGSLKKKFLEKFFPASRANNIR 127
Query: 121 KEIYGI 127
KEIYGI
Sbjct: 128 KEIYGI 133
BLAST of CcUC06G120310 vs. NCBI nr
Match:
XP_031113946.1 (uncharacterized protein LOC116017489 [Ipomoea triloba])
HSP 1 Score: 182.6 bits (462), Expect = 2.2e-42
Identity = 85/127 (66.93%), Postives = 101/127 (79.53%), Query Frame = 0
Query: 2 LRQLSEPNMIQQPLCIVYPA--TTIPFEVKTGLIYLLPQFIGRAGEDPHKHLKDFHVVCE 61
L++L PN+ QQPLCI +PA + FE+K+GLI+LLP F G AGEDPHKHLK+FHVVC
Sbjct: 61 LKELGAPNLDQQPLCITFPALDANVQFELKSGLIHLLPSFHGLAGEDPHKHLKEFHVVCS 120
Query: 62 GMRPHGVTEEQLNLRAFPFSLKEDVKDQLYYQPPGSITTWNKMKKLFLDKYFSASKANNI 121
M+P GVTEEQ+ LRAFPFSLK+ KD LYY P GSITTWN +K +FL+KYF AS+A NI
Sbjct: 121 SMKPTGVTEEQIKLRAFPFSLKDSAKDWLYYLPSGSITTWNDLKTVFLEKYFPASRAANI 180
Query: 122 RKEIYGI 127
RKEI GI
Sbjct: 181 RKEICGI 187
BLAST of CcUC06G120310 vs. NCBI nr
Match:
XP_031114073.1 (uncharacterized protein LOC116017603 [Ipomoea triloba])
HSP 1 Score: 182.6 bits (462), Expect = 2.2e-42
Identity = 85/127 (66.93%), Postives = 101/127 (79.53%), Query Frame = 0
Query: 2 LRQLSEPNMIQQPLCIVYPA--TTIPFEVKTGLIYLLPQFIGRAGEDPHKHLKDFHVVCE 61
L++L PN+ QQPLCI +PA + FE+K+GLI+LLP F G AGEDPHKHLK+FHVVC
Sbjct: 61 LKELGAPNLDQQPLCITFPALDANVQFELKSGLIHLLPSFHGLAGEDPHKHLKEFHVVCS 120
Query: 62 GMRPHGVTEEQLNLRAFPFSLKEDVKDQLYYQPPGSITTWNKMKKLFLDKYFSASKANNI 121
M+P GVTEEQ+ LRAFPFSLK+ KD LYY P GSITTWN +K +FL+KYF AS+A NI
Sbjct: 121 SMKPTGVTEEQIKLRAFPFSLKDSAKDWLYYLPSGSITTWNDLKTVFLEKYFPASRAANI 180
Query: 122 RKEIYGI 127
RKEI GI
Sbjct: 181 RKEICGI 187
BLAST of CcUC06G120310 vs. NCBI nr
Match:
XP_031099689.1 (uncharacterized protein LOC116003888 [Ipomoea triloba])
HSP 1 Score: 182.2 bits (461), Expect = 2.8e-42
Identity = 86/127 (67.72%), Postives = 101/127 (79.53%), Query Frame = 0
Query: 2 LRQLSEPNMIQQPLCIVYPAT--TIPFEVKTGLIYLLPQFIGRAGEDPHKHLKDFHVVCE 61
L++L PN+ QQPLCI +PA + FE+K+GLI+LLP F G AGEDPHKHLK+FHVVC
Sbjct: 38 LKELGAPNLDQQPLCITFPALDGNVQFELKSGLIHLLPSFHGLAGEDPHKHLKEFHVVCS 97
Query: 62 GMRPHGVTEEQLNLRAFPFSLKEDVKDQLYYQPPGSITTWNKMKKLFLDKYFSASKANNI 121
M+P GVTEEQ+ LRAFPFSLK+ KD LYY P GSITTWN +K +FL+KYF ASKA NI
Sbjct: 98 SMKPTGVTEEQIKLRAFPFSLKDSAKDWLYYLPFGSITTWNDLKTVFLEKYFPASKAANI 157
Query: 122 RKEIYGI 127
RKEI GI
Sbjct: 158 RKEICGI 164
BLAST of CcUC06G120310 vs. ExPASy TrEMBL
Match:
A0A6J1DRS5 (uncharacterized protein LOC111023248 OS=Momordica charantia OX=3673 GN=LOC111023248 PE=4 SV=1)
HSP 1 Score: 184.5 bits (467), Expect = 2.8e-43
Identity = 85/126 (67.46%), Postives = 102/126 (80.95%), Query Frame = 0
Query: 2 LRQLSEPNMIQQPLCIVYPATTIPFEVKTGLIYLLPQFIGRAGEDPHKHLKDFHVVCEGM 61
L+QL+ P++ QQPLCI +P FE+K+ LI+LLP F AGEDPHKHLK+FH+VC M
Sbjct: 6 LKQLAAPDLNQQPLCITFPNIENDFELKSXLIHLLPIFRVCAGEDPHKHLKEFHIVCSXM 65
Query: 62 RPHGVTEEQLNLRAFPFSLKEDVKDQLYYQPPGSITTWNKMKKLFLDKYFSASKANNIRK 121
+PHGV E+Q+NLRAF FSLK+ KD LYY P GSITTWNKMK+LFLDK+F AS+A NIRK
Sbjct: 66 KPHGVXEQQINLRAFXFSLKDQAKDXLYYLPSGSITTWNKMKRLFLDKFFPASRAANIRK 125
Query: 122 EIYGIT 128
EIYGIT
Sbjct: 126 EIYGIT 131
BLAST of CcUC06G120310 vs. ExPASy TrEMBL
Match:
A0A5A7USL5 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G004630 PE=4 SV=1)
HSP 1 Score: 184.1 bits (466), Expect = 3.6e-43
Identity = 85/126 (67.46%), Postives = 102/126 (80.95%), Query Frame = 0
Query: 1 MLRQLSEPNMIQQPLCIVYPATTIPFEVKTGLIYLLPQFIGRAGEDPHKHLKDFHVVCEG 60
+LR+L+EPN +PLCIV P TT PFE+K GLI+LLP F G +GEDPHKHLKDFH+VC+
Sbjct: 8 ILRELAEPNEDHRPLCIVIPPTTQPFELKPGLIHLLPIFKGSSGEDPHKHLKDFHMVCDS 67
Query: 61 MRPHGVTEEQLNLRAFPFSLKEDVKDQLYYQPPGSITTWNKMKKLFLDKYFSASKANNIR 120
MRP+ ++EEQLNLRAFPF L + K LYY PGSITTW +KK FL+K+F AS+ANNIR
Sbjct: 68 MRPYSISEEQLNLRAFPFFLTDVAKIWLYYLEPGSITTWGSLKKKFLEKFFPASRANNIR 127
Query: 121 KEIYGI 127
KEIYGI
Sbjct: 128 KEIYGI 133
BLAST of CcUC06G120310 vs. ExPASy TrEMBL
Match:
A0A5A7SRF5 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold96G00500 PE=4 SV=1)
HSP 1 Score: 178.7 bits (452), Expect = 1.5e-41
Identity = 83/125 (66.40%), Postives = 99/125 (79.20%), Query Frame = 0
Query: 2 LRQLSEPNMIQQPLCIVYPATTIPFEVKTGLIYLLPQFIGRAGEDPHKHLKDFHVVCEGM 61
+R+L E + Q+PLCIV TT PFE+K LI+LLP F G +GEDPHKHLKDFH+VC+ M
Sbjct: 69 IRKLDELDEDQRPLCIVISLTTQPFELKPRLIHLLPIFKGNSGEDPHKHLKDFHMVCDSM 128
Query: 62 RPHGVTEEQLNLRAFPFSLKEDVKDQLYYQPPGSITTWNKMKKLFLDKYFSASKANNIRK 121
RPHG++EEQLNLRAFPFSL + K LYY PGSITTW +KK FL+K+F AS+ NNIRK
Sbjct: 129 RPHGISEEQLNLRAFPFSLTDVAKRWLYYLEPGSITTWGSLKKKFLEKFFPASRTNNIRK 188
Query: 122 EIYGI 127
EIYGI
Sbjct: 189 EIYGI 193
BLAST of CcUC06G120310 vs. ExPASy TrEMBL
Match:
A0A5A7UT28 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold409G00180 PE=4 SV=1)
HSP 1 Score: 178.3 bits (451), Expect = 2.0e-41
Identity = 83/125 (66.40%), Postives = 99/125 (79.20%), Query Frame = 0
Query: 2 LRQLSEPNMIQQPLCIVYPATTIPFEVKTGLIYLLPQFIGRAGEDPHKHLKDFHVVCEGM 61
LR+L+EPN Q+PLC+V P TT PFE+K+ LI+LLP F G GEDPHKHLK FH+VC+ M
Sbjct: 69 LRELAEPNEDQRPLCMVIPPTTQPFELKSRLIHLLPIFKGNFGEDPHKHLKGFHMVCDSM 128
Query: 62 RPHGVTEEQLNLRAFPFSLKEDVKDQLYYQPPGSITTWNKMKKLFLDKYFSASKANNIRK 121
RPH +++EQLNLRAFPFSL + K YY GSITTW +KK FL+K+F ASKANNIRK
Sbjct: 129 RPHDISKEQLNLRAFPFSLTDVAKRWFYYLESGSITTWGSLKKKFLEKFFLASKANNIRK 188
Query: 122 EIYGI 127
EIYGI
Sbjct: 189 EIYGI 193
BLAST of CcUC06G120310 vs. ExPASy TrEMBL
Match:
A0A5A7TXC8 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1096G00170 PE=4 SV=1)
HSP 1 Score: 177.6 bits (449), Expect = 3.4e-41
Identity = 82/125 (65.60%), Postives = 99/125 (79.20%), Query Frame = 0
Query: 2 LRQLSEPNMIQQPLCIVYPATTIPFEVKTGLIYLLPQFIGRAGEDPHKHLKDFHVVCEGM 61
LR+L++P+ Q+PLCIV P T PFE+K GLI LLP F G +GED HKHLK FH+VC+ +
Sbjct: 9 LRELAKPDEDQRPLCIVMPPTIQPFELKPGLIQLLPIFKGSSGEDAHKHLKHFHMVCDSI 68
Query: 62 RPHGVTEEQLNLRAFPFSLKEDVKDQLYYQPPGSITTWNKMKKLFLDKYFSASKANNIRK 121
RPHG++EEQLNLRAFPFSL + LYY PGSITTW +KK FL+K+F AS+ANNIRK
Sbjct: 69 RPHGISEEQLNLRAFPFSLTDVANGWLYYLEPGSITTWGSLKKKFLEKFFPASRANNIRK 128
Query: 122 EIYGI 127
EIYGI
Sbjct: 129 EIYGI 133
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_022156327.1 | 5.7e-43 | 67.46 | uncharacterized protein LOC111023248 [Momordica charantia] | [more] |
KAA0058150.1 | 7.5e-43 | 67.46 | uncharacterized protein E6C27_scaffold274G004630 [Cucumis melo var. makuwa] | [more] |
XP_031113946.1 | 2.2e-42 | 66.93 | uncharacterized protein LOC116017489 [Ipomoea triloba] | [more] |
XP_031114073.1 | 2.2e-42 | 66.93 | uncharacterized protein LOC116017603 [Ipomoea triloba] | [more] |
XP_031099689.1 | 2.8e-42 | 67.72 | uncharacterized protein LOC116003888 [Ipomoea triloba] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1DRS5 | 2.8e-43 | 67.46 | uncharacterized protein LOC111023248 OS=Momordica charantia OX=3673 GN=LOC111023... | [more] |
A0A5A7USL5 | 3.6e-43 | 67.46 | Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... | [more] |
A0A5A7SRF5 | 1.5e-41 | 66.40 | Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... | [more] |
A0A5A7UT28 | 2.0e-41 | 66.40 | Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... | [more] |
A0A5A7TXC8 | 3.4e-41 | 65.60 | Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf... | [more] |
Match Name | E-value | Identity | Description | |