CcUC06G120310 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC06G120310
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Retrotrans_gag domain-containing protein
Location	CicolChr06: 21724645 .. 21725348 (+)
RNA-Seq Expression	CcUC06G120310
Synteny	CcUC06G120310

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTGAATTCATTTTAGTGTGTGTGTGTGTGTTTCTTATCGTGCATGACCTGTTCTTCTAGAAGTCTTGGATTCCAAATTTTTGCAAATATAACAGGGAAGAACGACAACTTTGACGAGAAAGTGAGCAAAAAATTGACTAAATTCATCAAAGAGACCAATAAAAAAAACGAGGAAAAGTTCGAGGACTTACAACCAGAAGTAGACATATGGGAGACCCCTGAGTGCATGTTGAGGCAGCTATCTGAGCCTAACATGATCCAGCAGCCTCTGTGCATAGTCTACCCTGCCACCACCATACCATTTGAGGTTAAGACGGGCCTGATTTATCTGTTGCCTCAGTTTATTGGCAGGGCAGGGGAAGACCCTCACAAACACTTAAAGGACTTTCATGTTGTTTGTGAAGGCATGAGGCCCCATGGAGTCACAGAGGAACAACTAAATCTGAGAGCATTTCCCTTTTCTCTGAAGGAGGATGTAAAAGATCAGCTCTATTACCAGCCCCCCGGTTCGATCACTACATGGAACAAGATGAAGAAGTTGTTTCTTGATAAATATTTTTCAGCTTCAAAGGCTAACAACATCAGAAAGGAGATTTATGGCATAACCTAGAGGGTCAGGGAGACATTGTTCTATTATTGGGAGAGATAGAAGCAACTCTGATAACTTGTAAAAATACAATTTATTATAATATGTAGAGAATTTA

mRNA sequence

CTTGAATTCATTTTAGTGTGTGTGTGTGTGTTTCTTATCGTGCATGACCTGTTCTTCTAGAAGTCTTGGATTCCAAATTTTTGCAAATATAACAGGGAAGAACGACAACTTTGACGAGAAAGTGAGCAAAAAATTGACTAAATTCATCAAAGAGACCAATAAAAAAAACGAGGAAAAGTTCGAGGACTTACAACCAGAAGTAGACATATGGGAGACCCCTGAGTGCATGTTGAGGCAGCTATCTGAGCCTAACATGATCCAGCAGCCTCTGTGCATAGTCTACCCTGCCACCACCATACCATTTGAGGTTAAGACGGGCCTGATTTATCTGTTGCCTCAGTTTATTGGCAGGGCAGGGGAAGACCCTCACAAACACTTAAAGGACTTTCATGTTGTTTGTGAAGGCATGAGGCCCCATGGAGTCACAGAGGAACAACTAAATCTGAGAGCATTTCCCTTTTCTCTGAAGGAGGATGTAAAAGATCAGCTCTATTACCAGCCCCCCGGTTCGATCACTACATGGAACAAGATGAAGAAGTTGTTTCTTGATAAATATTTTTCAGCTTCAAAGGCTAACAACATCAGAAAGGAGATTTATGGCATAACCTAGAGGGTCAGGGAGACATTGTTCTATTATTGGGAGAGATAGAAGCAACTCTGATAACTTGTAAAAATACAATTTATTATAATATGTAGAGAATTTA

Coding sequence (CDS)

ATGTTGAGGCAGCTATCTGAGCCTAACATGATCCAGCAGCCTCTGTGCATAGTCTACCCTGCCACCACCATACCATTTGAGGTTAAGACGGGCCTGATTTATCTGTTGCCTCAGTTTATTGGCAGGGCAGGGGAAGACCCTCACAAACACTTAAAGGACTTTCATGTTGTTTGTGAAGGCATGAGGCCCCATGGAGTCACAGAGGAACAACTAAATCTGAGAGCATTTCCCTTTTCTCTGAAGGAGGATGTAAAAGATCAGCTCTATTACCAGCCCCCCGGTTCGATCACTACATGGAACAAGATGAAGAAGTTGTTTCTTGATAAATATTTTTCAGCTTCAAAGGCTAACAACATCAGAAAGGAGATTTATGGCATAACCTAG

Protein sequence

MLRQLSEPNMIQQPLCIVYPATTIPFEVKTGLIYLLPQFIGRAGEDPHKHLKDFHVVCEGMRPHGVTEEQLNLRAFPFSLKEDVKDQLYYQPPGSITTWNKMKKLFLDKYFSASKANNIRKEIYGIT

Homology

[Close]

BLAST of CcUC06G120310 vs. NCBI nr
Match: XP_022156327.1 (uncharacterized protein LOC111023248 [Momordica charantia])

HSP 1 Score: 184.5 bits (467), Expect = 5.7e-43
Identity = 85/126 (67.46%), Postives = 102/126 (80.95%), Query Frame = 0


Query: 2   LRQLSEPNMIQQPLCIVYPATTIPFEVKTGLIYLLPQFIGRAGEDPHKHLKDFHVVCEGM 61
           L+QL+ P++ QQPLCI +P     FE+K+ LI+LLP F   AGEDPHKHLK+FH+VC  M
Sbjct: 6   LKQLAAPDLNQQPLCITFPNIENDFELKSXLIHLLPIFRVCAGEDPHKHLKEFHIVCSXM 65

Query: 62  RPHGVTEEQLNLRAFPFSLKEDVKDQLYYQPPGSITTWNKMKKLFLDKYFSASKANNIRK 121
           +PHGV E+Q+NLRAF FSLK+  KD LYY P GSITTWNKMK+LFLDK+F AS+A NIRK
Sbjct: 66  KPHGVXEQQINLRAFXFSLKDQAKDXLYYLPSGSITTWNKMKRLFLDKFFPASRAANIRK 125

Query: 122 EIYGIT 128
           EIYGIT
Sbjct: 126 EIYGIT 131

[Close]

BLAST of CcUC06G120310 vs. NCBI nr
Match: KAA0058150.1 (uncharacterized protein E6C27_scaffold274G004630 [Cucumis melo var. makuwa])

HSP 1 Score: 184.1 bits (466), Expect = 7.5e-43
Identity = 85/126 (67.46%), Postives = 102/126 (80.95%), Query Frame = 0


Query: 1   MLRQLSEPNMIQQPLCIVYPATTIPFEVKTGLIYLLPQFIGRAGEDPHKHLKDFHVVCEG 60
           +LR+L+EPN   +PLCIV P TT PFE+K GLI+LLP F G +GEDPHKHLKDFH+VC+ 
Sbjct: 8   ILRELAEPNEDHRPLCIVIPPTTQPFELKPGLIHLLPIFKGSSGEDPHKHLKDFHMVCDS 67

Query: 61  MRPHGVTEEQLNLRAFPFSLKEDVKDQLYYQPPGSITTWNKMKKLFLDKYFSASKANNIR 120
           MRP+ ++EEQLNLRAFPF L +  K  LYY  PGSITTW  +KK FL+K+F AS+ANNIR
Sbjct: 68  MRPYSISEEQLNLRAFPFFLTDVAKIWLYYLEPGSITTWGSLKKKFLEKFFPASRANNIR 127

Query: 121 KEIYGI 127
           KEIYGI
Sbjct: 128 KEIYGI 133

[Close]

BLAST of CcUC06G120310 vs. NCBI nr
Match: XP_031113946.1 (uncharacterized protein LOC116017489 [Ipomoea triloba])

HSP 1 Score: 182.6 bits (462), Expect = 2.2e-42
Identity = 85/127 (66.93%), Postives = 101/127 (79.53%), Query Frame = 0


Query: 2   LRQLSEPNMIQQPLCIVYPA--TTIPFEVKTGLIYLLPQFIGRAGEDPHKHLKDFHVVCE 61
           L++L  PN+ QQPLCI +PA    + FE+K+GLI+LLP F G AGEDPHKHLK+FHVVC 
Sbjct: 61  LKELGAPNLDQQPLCITFPALDANVQFELKSGLIHLLPSFHGLAGEDPHKHLKEFHVVCS 120

Query: 62  GMRPHGVTEEQLNLRAFPFSLKEDVKDQLYYQPPGSITTWNKMKKLFLDKYFSASKANNI 121
            M+P GVTEEQ+ LRAFPFSLK+  KD LYY P GSITTWN +K +FL+KYF AS+A NI
Sbjct: 121 SMKPTGVTEEQIKLRAFPFSLKDSAKDWLYYLPSGSITTWNDLKTVFLEKYFPASRAANI 180

Query: 122 RKEIYGI 127
           RKEI GI
Sbjct: 181 RKEICGI 187

[Close]

BLAST of CcUC06G120310 vs. NCBI nr
Match: XP_031114073.1 (uncharacterized protein LOC116017603 [Ipomoea triloba])

HSP 1 Score: 182.6 bits (462), Expect = 2.2e-42
Identity = 85/127 (66.93%), Postives = 101/127 (79.53%), Query Frame = 0


Query: 2   LRQLSEPNMIQQPLCIVYPA--TTIPFEVKTGLIYLLPQFIGRAGEDPHKHLKDFHVVCE 61
           L++L  PN+ QQPLCI +PA    + FE+K+GLI+LLP F G AGEDPHKHLK+FHVVC 
Sbjct: 61  LKELGAPNLDQQPLCITFPALDANVQFELKSGLIHLLPSFHGLAGEDPHKHLKEFHVVCS 120

Query: 62  GMRPHGVTEEQLNLRAFPFSLKEDVKDQLYYQPPGSITTWNKMKKLFLDKYFSASKANNI 121
            M+P GVTEEQ+ LRAFPFSLK+  KD LYY P GSITTWN +K +FL+KYF AS+A NI
Sbjct: 121 SMKPTGVTEEQIKLRAFPFSLKDSAKDWLYYLPSGSITTWNDLKTVFLEKYFPASRAANI 180

Query: 122 RKEIYGI 127
           RKEI GI
Sbjct: 181 RKEICGI 187

[Close]

BLAST of CcUC06G120310 vs. NCBI nr
Match: XP_031099689.1 (uncharacterized protein LOC116003888 [Ipomoea triloba])

HSP 1 Score: 182.2 bits (461), Expect = 2.8e-42
Identity = 86/127 (67.72%), Postives = 101/127 (79.53%), Query Frame = 0


Query: 2   LRQLSEPNMIQQPLCIVYPAT--TIPFEVKTGLIYLLPQFIGRAGEDPHKHLKDFHVVCE 61
           L++L  PN+ QQPLCI +PA    + FE+K+GLI+LLP F G AGEDPHKHLK+FHVVC 
Sbjct: 38  LKELGAPNLDQQPLCITFPALDGNVQFELKSGLIHLLPSFHGLAGEDPHKHLKEFHVVCS 97

Query: 62  GMRPHGVTEEQLNLRAFPFSLKEDVKDQLYYQPPGSITTWNKMKKLFLDKYFSASKANNI 121
            M+P GVTEEQ+ LRAFPFSLK+  KD LYY P GSITTWN +K +FL+KYF ASKA NI
Sbjct: 98  SMKPTGVTEEQIKLRAFPFSLKDSAKDWLYYLPFGSITTWNDLKTVFLEKYFPASKAANI 157

Query: 122 RKEIYGI 127
           RKEI GI
Sbjct: 158 RKEICGI 164

[Close]

BLAST of CcUC06G120310 vs. ExPASy TrEMBL
Match: A0A6J1DRS5 (uncharacterized protein LOC111023248 OS=Momordica charantia OX=3673 GN=LOC111023248 PE=4 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 2.8e-43
Identity = 85/126 (67.46%), Postives = 102/126 (80.95%), Query Frame = 0


Query: 2   LRQLSEPNMIQQPLCIVYPATTIPFEVKTGLIYLLPQFIGRAGEDPHKHLKDFHVVCEGM 61
           L+QL+ P++ QQPLCI +P     FE+K+ LI+LLP F   AGEDPHKHLK+FH+VC  M
Sbjct: 6   LKQLAAPDLNQQPLCITFPNIENDFELKSXLIHLLPIFRVCAGEDPHKHLKEFHIVCSXM 65

Query: 62  RPHGVTEEQLNLRAFPFSLKEDVKDQLYYQPPGSITTWNKMKKLFLDKYFSASKANNIRK 121
           +PHGV E+Q+NLRAF FSLK+  KD LYY P GSITTWNKMK+LFLDK+F AS+A NIRK
Sbjct: 66  KPHGVXEQQINLRAFXFSLKDQAKDXLYYLPSGSITTWNKMKRLFLDKFFPASRAANIRK 125

Query: 122 EIYGIT 128
           EIYGIT
Sbjct: 126 EIYGIT 131

[Close]

BLAST of CcUC06G120310 vs. ExPASy TrEMBL
Match: A0A5A7USL5 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G004630 PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 3.6e-43
Identity = 85/126 (67.46%), Postives = 102/126 (80.95%), Query Frame = 0


Query: 1   MLRQLSEPNMIQQPLCIVYPATTIPFEVKTGLIYLLPQFIGRAGEDPHKHLKDFHVVCEG 60
           +LR+L+EPN   +PLCIV P TT PFE+K GLI+LLP F G +GEDPHKHLKDFH+VC+ 
Sbjct: 8   ILRELAEPNEDHRPLCIVIPPTTQPFELKPGLIHLLPIFKGSSGEDPHKHLKDFHMVCDS 67

Query: 61  MRPHGVTEEQLNLRAFPFSLKEDVKDQLYYQPPGSITTWNKMKKLFLDKYFSASKANNIR 120
           MRP+ ++EEQLNLRAFPF L +  K  LYY  PGSITTW  +KK FL+K+F AS+ANNIR
Sbjct: 68  MRPYSISEEQLNLRAFPFFLTDVAKIWLYYLEPGSITTWGSLKKKFLEKFFPASRANNIR 127

Query: 121 KEIYGI 127
           KEIYGI
Sbjct: 128 KEIYGI 133

[Close]

BLAST of CcUC06G120310 vs. ExPASy TrEMBL
Match: A0A5A7SRF5 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold96G00500 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 1.5e-41
Identity = 83/125 (66.40%), Postives = 99/125 (79.20%), Query Frame = 0


Query: 2   LRQLSEPNMIQQPLCIVYPATTIPFEVKTGLIYLLPQFIGRAGEDPHKHLKDFHVVCEGM 61
           +R+L E +  Q+PLCIV   TT PFE+K  LI+LLP F G +GEDPHKHLKDFH+VC+ M
Sbjct: 69  IRKLDELDEDQRPLCIVISLTTQPFELKPRLIHLLPIFKGNSGEDPHKHLKDFHMVCDSM 128

Query: 62  RPHGVTEEQLNLRAFPFSLKEDVKDQLYYQPPGSITTWNKMKKLFLDKYFSASKANNIRK 121
           RPHG++EEQLNLRAFPFSL +  K  LYY  PGSITTW  +KK FL+K+F AS+ NNIRK
Sbjct: 129 RPHGISEEQLNLRAFPFSLTDVAKRWLYYLEPGSITTWGSLKKKFLEKFFPASRTNNIRK 188

Query: 122 EIYGI 127
           EIYGI
Sbjct: 189 EIYGI 193

[Close]

BLAST of CcUC06G120310 vs. ExPASy TrEMBL
Match: A0A5A7UT28 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold409G00180 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 2.0e-41
Identity = 83/125 (66.40%), Postives = 99/125 (79.20%), Query Frame = 0


Query: 2   LRQLSEPNMIQQPLCIVYPATTIPFEVKTGLIYLLPQFIGRAGEDPHKHLKDFHVVCEGM 61
           LR+L+EPN  Q+PLC+V P TT PFE+K+ LI+LLP F G  GEDPHKHLK FH+VC+ M
Sbjct: 69  LRELAEPNEDQRPLCMVIPPTTQPFELKSRLIHLLPIFKGNFGEDPHKHLKGFHMVCDSM 128

Query: 62  RPHGVTEEQLNLRAFPFSLKEDVKDQLYYQPPGSITTWNKMKKLFLDKYFSASKANNIRK 121
           RPH +++EQLNLRAFPFSL +  K   YY   GSITTW  +KK FL+K+F ASKANNIRK
Sbjct: 129 RPHDISKEQLNLRAFPFSLTDVAKRWFYYLESGSITTWGSLKKKFLEKFFLASKANNIRK 188

Query: 122 EIYGI 127
           EIYGI
Sbjct: 189 EIYGI 193

[Close]

BLAST of CcUC06G120310 vs. ExPASy TrEMBL
Match: A0A5A7TXC8 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1096G00170 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 3.4e-41
Identity = 82/125 (65.60%), Postives = 99/125 (79.20%), Query Frame = 0


Query: 2   LRQLSEPNMIQQPLCIVYPATTIPFEVKTGLIYLLPQFIGRAGEDPHKHLKDFHVVCEGM 61
           LR+L++P+  Q+PLCIV P T  PFE+K GLI LLP F G +GED HKHLK FH+VC+ +
Sbjct: 9   LRELAKPDEDQRPLCIVMPPTIQPFELKPGLIQLLPIFKGSSGEDAHKHLKHFHMVCDSI 68

Query: 62  RPHGVTEEQLNLRAFPFSLKEDVKDQLYYQPPGSITTWNKMKKLFLDKYFSASKANNIRK 121
           RPHG++EEQLNLRAFPFSL +     LYY  PGSITTW  +KK FL+K+F AS+ANNIRK
Sbjct: 69  RPHGISEEQLNLRAFPFSLTDVANGWLYYLEPGSITTWGSLKKKFLEKFFPASRANNIRK 128

Query: 122 EIYGI 127
           EIYGI
Sbjct: 129 EIYGI 133

The following BLAST results are available for this feature:

BLAST of CcUC06G120310 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022156327.1	5.7e-43	67.46	uncharacterized protein LOC111023248 [Momordica charantia]	[more]
KAA0058150.1	7.5e-43	67.46	uncharacterized protein E6C27_scaffold274G004630 [Cucumis melo var. makuwa]	[more]
XP_031113946.1	2.2e-42	66.93	uncharacterized protein LOC116017489 [Ipomoea triloba]	[more]
XP_031114073.1	2.2e-42	66.93	uncharacterized protein LOC116017603 [Ipomoea triloba]	[more]
XP_031099689.1	2.8e-42	67.72	uncharacterized protein LOC116003888 [Ipomoea triloba]	[more]

BLAST of CcUC06G120310 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC06G120310 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DRS5	2.8e-43	67.46	uncharacterized protein LOC111023248 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A5A7USL5	3.6e-43	67.46	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7SRF5	1.5e-41	66.40	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5A7UT28	2.0e-41	66.40	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7TXC8	3.4e-41	65.60	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]

BLAST of CcUC06G120310 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 44..126
None	No IPR available	PANTHER	PTHR24559:SF334	SUBFAMILY NOT NAMED	coord: 44..126

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC06G120310.1	CcUC06G120310.1	mRNA