CcUC06G118640 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC06G118640
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionUnknown protein
LocationCicolChr06: 13562373 .. 13562639 (+)
RNA-Seq ExpressionCcUC06G118640
SyntenyCcUC06G118640
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAGCAGTACCAAACAGCGCGTACCCGACACGAGTGTCCTCACCAAGGAGCATTCCGAACACGGCGGTGGCAGCAAAAGTAGTGGCGTTGGTGACCGGAACGGCGAGCGATATTGGGGCATTGCTTAGAATGGCGAAGAAGGTAGCGGAGGCGGTGAGATTAAGCAAAAAGGGGAGAGTGTATTGCCAGATAGAGAGGAGCTTGAGCCATCGACGGAGGGAGGAGAGGAATTTGGTTGAATTGGAGGAAGATTTGAGAGCTTGA

mRNA sequence

ATGAGAGCAGTACCAAACAGCGCGTACCCGACACGAGTGTCCTCACCAAGGAGCATTCCGAACACGGCGGTGGCAGCAAAAGTAGTGGCGTTGGTGACCGGAACGGCGAGCGATATTGGGGCATTGCTTAGAATGGCGAAGAAGGTAGCGGAGGCGGTGAGATTAAGCAAAAAGGGGAGAGTGTATTGCCAGATAGAGAGGAGCTTGAGCCATCGACGGAGGGAGGAGAGGAATTTGGTTGAATTGGAGGAAGATTTGAGAGCTTGA

Coding sequence (CDS)

ATGAGAGCAGTACCAAACAGCGCGTACCCGACACGAGTGTCCTCACCAAGGAGCATTCCGAACACGGCGGTGGCAGCAAAAGTAGTGGCGTTGGTGACCGGAACGGCGAGCGATATTGGGGCATTGCTTAGAATGGCGAAGAAGGTAGCGGAGGCGGTGAGATTAAGCAAAAAGGGGAGAGTGTATTGCCAGATAGAGAGGAGCTTGAGCCATCGACGGAGGGAGGAGAGGAATTTGGTTGAATTGGAGGAAGATTTGAGAGCTTGA

Protein sequence

MRAVPNSAYPTRVSSPRSIPNTAVAAKVVALVTGTASDIGALLRMAKKVAEAVRLSKKGRVYCQIERSLSHRRREERNLVELEEDLRA
Homology
BLAST of CcUC06G118640 vs. NCBI nr
Match: KAG6428663.1 (hypothetical protein SASPL_112916 [Salvia splendens])

HSP 1 Score: 99.0 bits (245), Expect = 2.2e-17
Identity = 55/71 (77.46%), Postives = 60/71 (84.51%), Query Frame = 0

Query: 1  MRAVPNSAYPTRVSSPRSIPNTAVAAKVVALVTGTASDIGALLRMAKKVAEAVRLSKKGR 60
          MR VPNSA PTRVSSPR IP TAVAAKVVALVTGTA++IG  L +AKKVAEA R +  GR
Sbjct: 10 MRQVPNSASPTRVSSPRMIPKTAVAAKVVALVTGTATEIGESLNIAKKVAEADRFTTNGR 69

Query: 61 VYCQIERSLSH 72
          VYCQI+RSLSH
Sbjct: 70 VYCQIKRSLSH 80

BLAST of CcUC06G118640 vs. NCBI nr
Match: RXI05944.1 (hypothetical protein DVH24_017986 [Malus domestica])

HSP 1 Score: 91.7 bits (226), Expect = 3.5e-15
Identity = 61/98 (62.24%), Postives = 68/98 (69.39%), Query Frame = 0

Query: 1   MRAVPNSAYPTRVSSPRSIPNTAVAAKVVALVTGTASDIGALLRMAKKVAEAVRLSKKGR 60
           ++AVPN A P  V SP+S PNTAVAA VVALVTGTA +IG  L MAKKVAEA RL+KKG 
Sbjct: 5   IKAVPNIARPRWVCSPKSKPNTAVAANVVALVTGTAREIGVWLSMAKKVAEAERLTKKGT 64

Query: 61  VYCQIERSLSHRRREERNLVEL----------EEDLRA 89
           VYCQI RSLS   RE R+L  +          EEDLRA
Sbjct: 65  VYCQIARSLSQLVREARSLWWIGPGWARAWAEEEDLRA 102

BLAST of CcUC06G118640 vs. NCBI nr
Match: KAF9827179.1 (hypothetical protein H0E87_016793 [Populus deltoides])

HSP 1 Score: 91.3 bits (225), Expect = 4.6e-15
Identity = 53/75 (70.67%), Postives = 60/75 (80.00%), Query Frame = 0

Query: 4  VPNSAYPTRVSSPRSIPNTAVAAKVVALVTGTASDIGALLRMAKKVAEAVRLSKKGRVYC 63
          VP+ A  TRVSSP+SIPNTAVAA VVALVTGTA D+G  L+MAKK+AEA RLSKKGR YC
Sbjct: 6  VPSKAKSTRVSSPKSIPNTAVAANVVALVTGTARDMGVSLKMAKKIAEAERLSKKGREYC 65

Query: 64 QIERSLSHRRREERN 79
          Q +R LS    EER+
Sbjct: 66 QNKRRLSQLLSEERS 80

BLAST of CcUC06G118640 vs. NCBI nr
Match: KAF9864746.1 (hypothetical protein H0E87_024280 [Populus deltoides])

HSP 1 Score: 91.3 bits (225), Expect = 4.6e-15
Identity = 53/75 (70.67%), Postives = 60/75 (80.00%), Query Frame = 0

Query: 4  VPNSAYPTRVSSPRSIPNTAVAAKVVALVTGTASDIGALLRMAKKVAEAVRLSKKGRVYC 63
          VP+ A  TRVSSP+SIPNTAVAA VVALVTGTA D+G  L+MAKK+AEA RLSKKGR YC
Sbjct: 6  VPSKAKSTRVSSPKSIPNTAVAANVVALVTGTARDMGVSLKMAKKIAEAERLSKKGREYC 65

Query: 64 QIERSLSHRRREERN 79
          Q +R LS    EER+
Sbjct: 66 QNKRRLSQLLSEERS 80

BLAST of CcUC06G118640 vs. NCBI nr
Match: TKS10737.1 (hypothetical protein D5086_0000080730 [Populus alba])

HSP 1 Score: 90.5 bits (223), Expect = 7.8e-15
Identity = 58/93 (62.37%), Postives = 65/93 (69.89%), Query Frame = 0

Query: 4  VPNSAYPTRVSSPRSIPNTAVAAKVVALVTGTASDIGALLRMAKKVAEAVRLSKKGRVYC 63
          VP+ A  TRVSSP+SIPNTAVAA VVALVTGTA D+G  L+MAKK+AEA RLSKKGR YC
Sbjct: 6  VPSKAKSTRVSSPKSIPNTAVAANVVALVTGTARDMGVSLKMAKKIAEAERLSKKGREYC 65

Query: 64 QIERSLSHRRREERNL---------VELEEDLR 88
          Q +R LS    EER+           E EED R
Sbjct: 66 QNKRRLSQLLSEERSFWWNFGGDEREEEEEDFR 98

BLAST of CcUC06G118640 vs. ExPASy TrEMBL
Match: A0A498KHR2 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_017986 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.7e-15
Identity = 61/98 (62.24%), Postives = 68/98 (69.39%), Query Frame = 0

Query: 1   MRAVPNSAYPTRVSSPRSIPNTAVAAKVVALVTGTASDIGALLRMAKKVAEAVRLSKKGR 60
           ++AVPN A P  V SP+S PNTAVAA VVALVTGTA +IG  L MAKKVAEA RL+KKG 
Sbjct: 5   IKAVPNIARPRWVCSPKSKPNTAVAANVVALVTGTAREIGVWLSMAKKVAEAERLTKKGT 64

Query: 61  VYCQIERSLSHRRREERNLVEL----------EEDLRA 89
           VYCQI RSLS   RE R+L  +          EEDLRA
Sbjct: 65  VYCQIARSLSQLVREARSLWWIGPGWARAWAEEEDLRA 102

BLAST of CcUC06G118640 vs. ExPASy TrEMBL
Match: A0A6M2EE18 (Uncharacterized protein OS=Populus davidiana OX=266767 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 2.2e-15
Identity = 53/75 (70.67%), Postives = 60/75 (80.00%), Query Frame = 0

Query: 4  VPNSAYPTRVSSPRSIPNTAVAAKVVALVTGTASDIGALLRMAKKVAEAVRLSKKGRVYC 63
          VP+ A  TRVSSP+SIPNTAVAA VVALVTGTA D+G  L+MAKK+AEA RLSKKGR YC
Sbjct: 6  VPSKARSTRVSSPKSIPNTAVAANVVALVTGTARDMGVSLKMAKKIAEAERLSKKGREYC 65

Query: 64 QIERSLSHRRREERN 79
          Q +R LS    EER+
Sbjct: 66 QNKRRLSQLLSEERS 80

BLAST of CcUC06G118640 vs. ExPASy TrEMBL
Match: A0A4U5QN65 (Uncharacterized protein OS=Populus alba OX=43335 GN=D5086_0000080730 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 3.8e-15
Identity = 58/93 (62.37%), Postives = 65/93 (69.89%), Query Frame = 0

Query: 4  VPNSAYPTRVSSPRSIPNTAVAAKVVALVTGTASDIGALLRMAKKVAEAVRLSKKGRVYC 63
          VP+ A  TRVSSP+SIPNTAVAA VVALVTGTA D+G  L+MAKK+AEA RLSKKGR YC
Sbjct: 6  VPSKAKSTRVSSPKSIPNTAVAANVVALVTGTARDMGVSLKMAKKIAEAERLSKKGREYC 65

Query: 64 QIERSLSHRRREERNL---------VELEEDLR 88
          Q +R LS    EER+           E EED R
Sbjct: 66 QNKRRLSQLLSEERSFWWNFGGDEREEEEEDFR 98

BLAST of CcUC06G118640 vs. ExPASy TrEMBL
Match: A0A022QWP3 (Uncharacterized protein OS=Erythranthe guttata OX=4155 GN=MIMGU_mgv1a016904mg PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 5.4e-14
Identity = 46/71 (64.79%), Postives = 54/71 (76.06%), Query Frame = 0

Query: 1  MRAVPNSAYPTRVSSPRSIPNTAVAAKVVALVTGTASDIGALLRMAKKVAEAVRLSKKGR 60
          MR VPN A PTRVSSPR IP TAVAA VVA VTGTA ++G  ++M KKVA+A R  +KG+
Sbjct: 24 MRRVPNKARPTRVSSPRMIPKTAVAANVVAFVTGTAKEMGVSIKMPKKVADADRFIRKGK 83

Query: 61 VYCQIERSLSH 72
          VYCQI  S +H
Sbjct: 84 VYCQINTSFNH 94

BLAST of CcUC06G118640 vs. ExPASy TrEMBL
Match: A0A118JVW5 (Uncharacterized protein OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_004055 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 3.0e-12
Identity = 46/74 (62.16%), Postives = 54/74 (72.97%), Query Frame = 0

Query: 1  MRAVPNSAYPTRVSSPRSIPNTAVAAKVVALVTGTASDIGALLRMAKKVAEAVRLSKKGR 60
          M+ VP    PTRVSSP +IPNTAVAA VVALVTGTA +IG  LR+ KK AEA RL++KG 
Sbjct: 1  MKKVPKRVNPTRVSSPSNIPNTAVAANVVALVTGTAREIGVSLRIEKKAAEADRLTRKGT 60

Query: 61 VYCQIERSLSHRRR 75
           YCQ +R L+   R
Sbjct: 61 EYCQTKRRLNQSMR 74

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6428663.12.2e-1777.46hypothetical protein SASPL_112916 [Salvia splendens][more]
RXI05944.13.5e-1562.24hypothetical protein DVH24_017986 [Malus domestica][more]
KAF9827179.14.6e-1570.67hypothetical protein H0E87_016793 [Populus deltoides][more]
KAF9864746.14.6e-1570.67hypothetical protein H0E87_024280 [Populus deltoides][more]
TKS10737.17.8e-1562.37hypothetical protein D5086_0000080730 [Populus alba][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A498KHR21.7e-1562.24Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_017986 PE=4 SV=1[more]
A0A6M2EE182.2e-1570.67Uncharacterized protein OS=Populus davidiana OX=266767 PE=4 SV=1[more]
A0A4U5QN653.8e-1562.37Uncharacterized protein OS=Populus alba OX=43335 GN=D5086_0000080730 PE=4 SV=1[more]
A0A022QWP35.4e-1464.79Uncharacterized protein OS=Erythranthe guttata OX=4155 GN=MIMGU_mgv1a016904mg PE... [more]
A0A118JVW53.0e-1262.16Uncharacterized protein OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_004... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 65..88

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC06G118640.1CcUC06G118640.1mRNA