Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCAAAATTAAAAAGAATCTGGCCAAATTCACTCTTTCTTCACATTTAAGATTAAACATGCCATCTATGAATTATTTGCGATTTTTAAACTTGGTTTTTCGATGAAAATGACTAAATGTATGCAATTTTCATCAGAATTCTTTGGATCAAAAGCTAAATAATTCTAGAAAATGAGAATTATGAGCAAGTAAATGGAGGGTTAAATAAAATTATCCAACCAGGGACAACAACAAAGTTGGGTGGAATGGTTTCCTCTCTCTTCTCAAGGCACCAACAAAGCAGTCCAACAGCAAGCAAAAACCCAGTTATTTATCATCAACTACCTCCTGCAAAGAAGCACTTCTCCATGTTCTGCCAAAGACTAGTCAGCCAAAAATCCCCATCACACAACAACCTTCTTCGTTACCATCAAAATTGAATAAACTTGCAGCTTTCGACCCAGAAAAATCCATGATTTTCTATCGACAAAACTTACATGAGAATTGGTATGAAATACTTGGCGCTTTCCAAAAGTGTCGGATTTTGGCTCCATTACACTACAACCCAACACGGCCATCTTGGCAGTCGAAAATAGTGAGCACAGGTTTATTTTAAGCAACATCCGTGATTGAGACAAGGTTGGATCCTTTACGGTGAAATCTCGAGCCATGGAGCATTGAAGCCTTTTACAACCATCAAATGGTGCCTTCTTATGTAGGTTGGGTTAAGATTAGAAATTTTGCCAATGATAAATGGTCCCATGAATCTTTCCAATTTATTGGTGACACTTGTCGAGGCTTTTTAGACGTGGCAAAGAAGACCTTAGGAAGAATGGACATGATGGAAGGTTGTTTAAAAGTGAAGAAAAATGAAAATGGATTTCTCCTGGCCACTGTTCATCTTCCAGCCATGAAAAAAGTGCTGATTTATGTCCATGTTGATCCATTGAAAATGAGTTAGAGTTAATTCTATTAAAAGTTTGGACTTGATTTGTATTTGGGCTTGGTTAGATTAAGGTAAAAAATGTAGTAGGATTAAGATATATAAGTTATCTTGGTCAAATCGCTAATTGATTAGGATTAGGATGAGGTTTATTATTGAAATGAACTCTTGGTTTGAGGTTCTTGAACTTCTTGAGGGTTCGGTGGGTTTCTTGCAGCAACTACTCTTTGGAGCACTTCTTGCGCTTGTAAATTTGCTTGAGCCAATATTTGAATAAATTGAGTAATTGATTGCCACATTTCCTGAAAACCTTTTTTTGACGATTCCACCAACTGCAACTGCATAGACCAGTTTCATAGGTCATAATTTTAAAGAAACTTGATATTCTGTAATGGTCTGAATTTGCCAACATGAAACTTCGAAATTTTAAATTTTATATTTTGTTTTCTTTTCAGGATCTTCCTAACTATGCTCAGCACACTGTGCCCATTTTCTCTCTACCACAAGAATGGCTCTGGTGTGAGTCATGGTGTGGTAATGCCACAAAATCCAAGGCGAAAACCATAGATCTCTGTAACAACCCCATGACCAAAGAACCTAAGCTTCAGGTCCGACTCTTGTTTCTTCATTTCATTCTGTATCTTCAGAAGCATAATCACGCCATATCTTTACTCTTTGTTTTGCATGCTTTTTCATCTTAATCATTCATTGAAATTAGTTGCATTTATCAGGGTGCTAGAAGAATTGTTCCCGAATGGCCAGATCTTGATTTGGAGGCCAGAACATTCACAGCTAAAATATTAGGTGATATAAACCCTCAAAAACCTGTCTTATCGACGGATCAAGCCGACAATTCTGCAAATAAGGAGTCTATTGATGAAGAATCAAAGGCAGAGTTATAATGGGATCCTTTAAATTCTACTACATTAGACTGATGGGAAGATGCTGCTTCTTCAATTCAACATGTCATACTTCTACCATAAGTTAGCCTTCTTAGAATTAACTTGGAAGCAGATGGGCACCTGGCTCTGTAGGCTGATAATGCAGTGAAGACATGCCTCTCCCCTCAATTTTCATGGAAGAGTTATTTATTCTATTTCCCCCTCTTCTCCAGTACTTTGAATATCAACTTAGTGAAAAAAAGTTGGCAATTTTGATAAAGACGTGTATAGTAGAACAGTTGGTTTTGTAATTTAGTGATGGAGTTTGCAAGAATTTTCTTCCCATTATTCCCATTAGGAAACCTTTTTGTTATGATGCTAGCAATATGCATATTGCCTCCATATTTCATATTACCAAAATGTAATTGAAATTATGAAAATTCTTCATTTATTTTAGAAGTGCTTGAACATTGTACCTCTTCTGATCATTATATGAATCTAGAAGCCATTCCAAACAAGTCTACCTTTTCAAAGTCAAG
mRNA sequence
CCAAAATTAAAAAGAATCTGGCCAAATTCACTCTTTCTTCACATTTAAGATTAAACATGCCATCTATGAATTATTTGCGATTTTTAAACTTGGTTTTTCGATGAAAATGACTAAATGTATGCAATTTTCATCAGAATTCTTTGGATCAAAAGCTAAATAATTCTAGAAAATGAGAATTATGAGCAAGTAAATGGAGGGTTAAATAAAATTATCCAACCAGGGACAACAACAAAGTTGGGTGGAATGGTTTCCTCTCTCTTCTCAAGGCACCAACAAAGCAGTCCAACAGCAAGCAAAAACCCAGTTATTTATCATCAACTACCTCCTGCAAAGAAGCACTTCTCCATGTTCTGCCAAAGACTAGTCAGCCAAAAATCCCCATCACACAACAACCTTCTTCGTTACCATCAAAATTGAATAAACTTGCAGCTTTCGACCCAGAAAAATCCATGATTTTCTATCGACAAAACTTACATGAGAATTGGTATGAAATACTTGGCGCTTTCCAAAAGTGTCGGATTTTGGCTCCATTACACTACAACCCAACACGGCCATCTTGGCAGTCGAAAATAGTGAGCACAGGTTTATTTTAAGCAACATCCGTGATTGAGACAAGGTTGGATCCTTTACGGTGAAATCTCGAGCCATGGAGCATTGAAGCCTTTTACAACCATCAAATGGTGCCTTCTTATGTAGGTTGGGTTAAGATTAGAAATTTTGCCAATGATAAATGGTCCCATGAATCTTTCCAATTTATTGGTGACACTTGTCGAGGCTTTTTAGACGTGGCAAAGAAGACCTTAGGAAGAATGGACATGATGGAAGGTTGTTTAAAAGTGAAGAAAAATGAAAATGGATTTCTCCTGGCCACTGTTCATCTTCCAGCCATGAAAAAAGTGCTGATTTATGTCCATGTTGATCCATTGAAAATGAGTTAGAGTTAATTCTATTAAAAGTTTGGACTTGATTTGTATTTGGGCTTGGTTAGATTAAGGTAAAAAATGTAGTAGGATTAAGATATATAAGTTATCTTGGTCAAATCGCTAATTGATTAGGATTAGGATGAGGTTTATTATTGAAATGAACTCTTGGTTTGAGGTTCTTGAACTTCTTGAGGGTTCGGTGGGTTTCTTGCAGCAACTACTCTTTGGAGCACTTCTTGCGCTTGTAAATTTGCTTGAGCCAATATTTGAATAAATTGAGTAATTGATTGCCACATTTCCTGAAAACCTTTTTTTGACGATTCCACCAACTGCAACTGCATAGACCAGTTTCATAGGATCTTCCTAACTATGCTCAGCACACTGTGCCCATTTTCTCTCTACCACAAGAATGGCTCTGGTGTGAGTCATGGTGTGGTAATGCCACAAAATCCAAGGCGAAAACCATAGATCTCTGTAACAACCCCATGACCAAAGAACCTAAGCTTCAGGGTGCTAGAAGAATTGTTCCCGAATGGCCAGATCTTGATTTGGAGGCCAGAACATTCACAGCTAAAATATTAGGTGATATAAACCCTCAAAAACCTGTCTTATCGACGGATCAAGCCGACAATTCTGCAAATAAGGAGTCTATTGATGAAGAATCAAAGGCAGAGTTATAATGGGATCCTTTAAATTCTACTACATTAGACTGATGGGAAGATGCTGCTTCTTCAATTCAACATGTCATACTTCTACCATAAGTTAGCCTTCTTAGAATTAACTTGGAAGCAGATGGGCACCTGGCTCTGTAGGCTGATAATGCAGTGAAGACATGCCTCTCCCCTCAATTTTCATGGAAGAGTTATTTATTCTATTTCCCCCTCTTCTCCAGTACTTTGAATATCAACTTAGTGAAAAAAAGTTGGCAATTTTGATAAAGACGTGTATAGTAGAACAGTTGGTTTTGTAATTTAGTGATGGAGTTTGCAAGAATTTTCTTCCCATTATTCCCATTAGGAAACCTTTTTGTTATGATGCTAGCAATATGCATATTGCCTCCATATTTCATATTACCAAAATGTAATTGAAATTATGAAAATTCTTCATTTATTTTAGAAGTGCTTGAACATTGTACCTCTTCTGATCATTATATGAATCTAGAAGCCATTCCAAACAAGTCTACCTTTTCAAAGTCAAG
Coding sequence (CDS)
ATGGTGCCTTCTTATGTAGGTTGGGTTAAGATTAGAAATTTTGCCAATGATAAATGGTCCCATGAATCTTTCCAATTTATTGGTGACACTTGTCGAGGCTTTTTAGACGTGGCAAAGAAGACCTTAGGAAGAATGGACATGATGGAAGGTTGTTTAAAAGTGAAGAAAAATGAAAATGGATTTCTCCTGGCCACTGTTCATCTTCCAGCCATGAAAAAAGTGCTGATTTATGTCCATGTTGATCCATTGAAAATGAGTTAG
Protein sequence
MVPSYVGWVKIRNFANDKWSHESFQFIGDTCRGFLDVAKKTLGRMDMMEGCLKVKKNENGFLLATVHLPAMKKVLIYVHVDPLKMS
Homology
BLAST of CcUC05G092440 vs. NCBI nr
Match:
QWT43305.1 (kinesin-related protein KIN7C [Citrullus lanatus subsp. vulgaris])
HSP 1 Score: 94.0 bits (232), Expect = 6.9e-16
Identity = 41/81 (50.62%), Postives = 57/81 (70.37%), Query Frame = 0
Query: 2 VPSYVGWVKIRNFANDKWSHESFQFIGDTCRGFLDVAKKTLGRMDMMEGCLKVKKNENGF 61
VPSY W+KIRN D+WS+++F+ IG+ C G+++ +KKTL RMDMME LKVK N+NGF
Sbjct: 240 VPSYGSWIKIRNLLIDQWSYDTFKLIGELCGGYIETSKKTLARMDMMEASLKVKMNKNGF 299
Query: 62 LLATVHLPAMKKVLIYVHVDP 83
L A + L + + V +DP
Sbjct: 300 LPAIIQLLSTSAFSMAVQMDP 320
BLAST of CcUC05G092440 vs. NCBI nr
Match:
KAA0050054.1 (hypothetical protein E6C27_scaffold675G00340 [Cucumis melo var. makuwa])
HSP 1 Score: 70.1 bits (170), Expect = 1.1e-08
Identity = 29/68 (42.65%), Postives = 45/68 (66.18%), Query Frame = 0
Query: 1 MVPSYVGWVKIRNFANDKWSHESFQFIGDTCRGFLDVAKKTLGRMDMMEGCLKVKKNENG 60
++PSY GW+K+R W+ ESF IGD C GF++VAK+T D++E +++K N +G
Sbjct: 319 VIPSYGGWIKVRGVPLHAWNLESFTQIGDACGGFIEVAKETRELTDIIEASIRIKDNYSG 378
Query: 61 FLLATVHL 69
F+ A + L
Sbjct: 379 FIPAFIKL 386
BLAST of CcUC05G092440 vs. NCBI nr
Match:
TYK10355.1 (hypothetical protein E5676_scaffold367G00330 [Cucumis melo var. makuwa])
HSP 1 Score: 70.1 bits (170), Expect = 1.1e-08
Identity = 29/68 (42.65%), Postives = 45/68 (66.18%), Query Frame = 0
Query: 1 MVPSYVGWVKIRNFANDKWSHESFQFIGDTCRGFLDVAKKTLGRMDMMEGCLKVKKNENG 60
++PSY GW+K+R W+ ESF IGD C GF++VAK+T D++E +++K N +G
Sbjct: 371 VIPSYGGWIKVRGVPLHAWNLESFTQIGDACGGFIEVAKETRELTDIIEASIRIKDNYSG 430
Query: 61 FLLATVHL 69
F+ A + L
Sbjct: 431 FIPAFIKL 438
BLAST of CcUC05G092440 vs. NCBI nr
Match:
KAA0044333.1 (hypothetical protein E6C27_scaffold46G00570 [Cucumis melo var. makuwa])
HSP 1 Score: 70.1 bits (170), Expect = 1.1e-08
Identity = 30/68 (44.12%), Postives = 45/68 (66.18%), Query Frame = 0
Query: 1 MVPSYVGWVKIRNFANDKWSHESFQFIGDTCRGFLDVAKKTLGRMDMMEGCLKVKKNENG 60
++PSY GW+K+R W+ ESF IGD C GF++VAK+T D++E ++VK N +G
Sbjct: 217 VIPSYGGWIKVRGVPLHAWNLESFIQIGDACGGFMEVAKETRELTDLIEASIRVKDNYSG 276
Query: 61 FLLATVHL 69
F+ A + L
Sbjct: 277 FIPAFIKL 284
BLAST of CcUC05G092440 vs. NCBI nr
Match:
KAA0039967.1 (hypothetical protein E6C27_scaffold122G002490 [Cucumis melo var. makuwa])
HSP 1 Score: 69.7 bits (169), Expect = 1.4e-08
Identity = 30/68 (44.12%), Postives = 44/68 (64.71%), Query Frame = 0
Query: 1 MVPSYVGWVKIRNFANDKWSHESFQFIGDTCRGFLDVAKKTLGRMDMMEGCLKVKKNENG 60
++PSY GW+K+R W+ ESF IGD C GF++VAK+T D+ E +K+K N +G
Sbjct: 265 VIPSYGGWIKVRGVPLHAWNLESFIQIGDACGGFVEVAKETRELTDIFEASIKIKDNYSG 324
Query: 61 FLLATVHL 69
F+ A + L
Sbjct: 325 FIPAYIKL 332
BLAST of CcUC05G092440 vs. ExPASy TrEMBL
Match:
A0A5A7U495 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G00340 PE=4 SV=1)
HSP 1 Score: 70.1 bits (170), Expect = 5.1e-09
Identity = 29/68 (42.65%), Postives = 45/68 (66.18%), Query Frame = 0
Query: 1 MVPSYVGWVKIRNFANDKWSHESFQFIGDTCRGFLDVAKKTLGRMDMMEGCLKVKKNENG 60
++PSY GW+K+R W+ ESF IGD C GF++VAK+T D++E +++K N +G
Sbjct: 319 VIPSYGGWIKVRGVPLHAWNLESFTQIGDACGGFIEVAKETRELTDIIEASIRIKDNYSG 378
Query: 61 FLLATVHL 69
F+ A + L
Sbjct: 379 FIPAFIKL 386
BLAST of CcUC05G092440 vs. ExPASy TrEMBL
Match:
A0A5D3CFS8 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00330 PE=4 SV=1)
HSP 1 Score: 70.1 bits (170), Expect = 5.1e-09
Identity = 29/68 (42.65%), Postives = 45/68 (66.18%), Query Frame = 0
Query: 1 MVPSYVGWVKIRNFANDKWSHESFQFIGDTCRGFLDVAKKTLGRMDMMEGCLKVKKNENG 60
++PSY GW+K+R W+ ESF IGD C GF++VAK+T D++E +++K N +G
Sbjct: 371 VIPSYGGWIKVRGVPLHAWNLESFTQIGDACGGFIEVAKETRELTDIIEASIRIKDNYSG 430
Query: 61 FLLATVHL 69
F+ A + L
Sbjct: 431 FIPAFIKL 438
BLAST of CcUC05G092440 vs. ExPASy TrEMBL
Match:
A0A5A7TLE2 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G00570 PE=4 SV=1)
HSP 1 Score: 70.1 bits (170), Expect = 5.1e-09
Identity = 30/68 (44.12%), Postives = 45/68 (66.18%), Query Frame = 0
Query: 1 MVPSYVGWVKIRNFANDKWSHESFQFIGDTCRGFLDVAKKTLGRMDMMEGCLKVKKNENG 60
++PSY GW+K+R W+ ESF IGD C GF++VAK+T D++E ++VK N +G
Sbjct: 217 VIPSYGGWIKVRGVPLHAWNLESFIQIGDACGGFMEVAKETRELTDLIEASIRVKDNYSG 276
Query: 61 FLLATVHL 69
F+ A + L
Sbjct: 277 FIPAFIKL 284
BLAST of CcUC05G092440 vs. ExPASy TrEMBL
Match:
A0A5D3DLP0 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00770 PE=4 SV=1)
HSP 1 Score: 69.7 bits (169), Expect = 6.7e-09
Identity = 30/68 (44.12%), Postives = 44/68 (64.71%), Query Frame = 0
Query: 1 MVPSYVGWVKIRNFANDKWSHESFQFIGDTCRGFLDVAKKTLGRMDMMEGCLKVKKNENG 60
++PSY GW+K+R W+ ESF IGD C GF++VAK+T D+ E +K+K N +G
Sbjct: 265 VIPSYGGWIKVRGVPLHAWNLESFIQIGDACGGFVEVAKETRELTDIFEASIKIKDNYSG 324
Query: 61 FLLATVHL 69
F+ A + L
Sbjct: 325 FIPAYIKL 332
BLAST of CcUC05G092440 vs. ExPASy TrEMBL
Match:
A0A5A7TEK8 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold122G002490 PE=4 SV=1)
HSP 1 Score: 69.7 bits (169), Expect = 6.7e-09
Identity = 30/68 (44.12%), Postives = 44/68 (64.71%), Query Frame = 0
Query: 1 MVPSYVGWVKIRNFANDKWSHESFQFIGDTCRGFLDVAKKTLGRMDMMEGCLKVKKNENG 60
++PSY GW+K+R W+ ESF IGD C GF++VAK+T D+ E +K+K N +G
Sbjct: 265 VIPSYGGWIKVRGVPLHAWNLESFIQIGDACGGFVEVAKETRELTDIFEASIKIKDNYSG 324
Query: 61 FLLATVHL 69
F+ A + L
Sbjct: 325 FIPAYIKL 332
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
QWT43305.1 | 6.9e-16 | 50.62 | kinesin-related protein KIN7C [Citrullus lanatus subsp. vulgaris] | [more] |
KAA0050054.1 | 1.1e-08 | 42.65 | hypothetical protein E6C27_scaffold675G00340 [Cucumis melo var. makuwa] | [more] |
TYK10355.1 | 1.1e-08 | 42.65 | hypothetical protein E5676_scaffold367G00330 [Cucumis melo var. makuwa] | [more] |
KAA0044333.1 | 1.1e-08 | 44.12 | hypothetical protein E6C27_scaffold46G00570 [Cucumis melo var. makuwa] | [more] |
KAA0039967.1 | 1.4e-08 | 44.12 | hypothetical protein E6C27_scaffold122G002490 [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7U495 | 5.1e-09 | 42.65 | DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... | [more] |
A0A5D3CFS8 | 5.1e-09 | 42.65 | DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... | [more] |
A0A5A7TLE2 | 5.1e-09 | 44.12 | DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... | [more] |
A0A5D3DLP0 | 6.7e-09 | 44.12 | DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... | [more] |
A0A5A7TEK8 | 6.7e-09 | 44.12 | DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... | [more] |
Match Name | E-value | Identity | Description | |