CcUC03G057180 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC03G057180
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
Description40S ribosomal protein S30
LocationCicolChr03: 29069955 .. 29070531 (-)
RNA-Seq ExpressionCcUC03G057180
SyntenyCcUC03G057180
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTGAGCCAAACCCTAACTCTTCATTTCTCGACCTTCGATCACTTCTTTTTCCTGTGTTTATCGGTTATTTTATCTGTAAGAATCTGTTTGTGAATTGTGTGTATTCGTGCTTTGATCGATTTTCAGGGAAAGTACACGGATCTCTGGCTCGTGCCGGGAAGGTGAGAGGTCAAACTCCGAAAGTAGCAAAGCAGGACAAGAAGAAGAAGCCCCGTGGACGTGCACACAAGCGGATGCAATACAATCGCAGATTCGTTACTGCAGGTAACCTATTGTTCTTAACTTCATTTGCTTTTCCGATGTATTGCCGGTTTAGAATTGCTTATTTTGGTTTAACATCGTATTCAATCACTATTTTACGGGTTATGGTAATTGGTTTGTTTGGGATTACATGTAGCTCTGTATAATAATCATTATTGCATTAGTAAGGTTTTCGTTTCAGGATTCGATAAGCATCGTTCTAATGTGCGATTATTATTTGTTTGATCTTTGCAGTGGTTGGTTTTGGAAAGAAGAGAGGACCCAACTCCTCTGAGAAGTAAGCAAACAGCAAACCGGGGGGGGGGGGGGGGG

mRNA sequence

ATGGGTGAGCCAAACCCTAACTCTTCATTTCTCGACCTTCGATCACTTCTTTTTCCTGTGTTTATCGGTTATTTTATCTGTAAGAATCTGTTTGTGAATTGTGTGTATTCGTGCTTTGATCGATTTTCAGGGAAAGTACACGGATCTCTGGCTCGTGCCGGGAAGGTGAGAGGTCAAACTCCGAAAGTAGCAAAGCAGGACAAGAAGAAGAAGCCCCGTGGACGTGCACACAAGCGGATGCAATACAATCGCAGATTCGTTACTGCAGTGGTTGGTTTTGGAAAGAAGAGAGGACCCAACTCCTCTGAGAAGTAAGCAAACAGCAAACCGGGGGGGGGGGGGGGGG

Coding sequence (CDS)

ATGGGTGAGCCAAACCCTAACTCTTCATTTCTCGACCTTCGATCACTTCTTTTTCCTGTGTTTATCGGTTATTTTATCTGTAAGAATCTGTTTGTGAATTGTGTGTATTCGTGCTTTGATCGATTTTCAGGGAAAGTACACGGATCTCTGGCTCGTGCCGGGAAGGTGAGAGGTCAAACTCCGAAAGTAGCAAAGCAGGACAAGAAGAAGAAGCCCCGTGGACGTGCACACAAGCGGATGCAATACAATCGCAGATTCGTTACTGCAGTGGTTGGTTTTGGAAAGAAGAGAGGACCCAACTCCTCTGAGAAGTAA

Protein sequence

MGEPNPNSSFLDLRSLLFPVFIGYFICKNLFVNCVYSCFDRFSGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
Homology
BLAST of CcUC03G057180 vs. NCBI nr
Match: KYP67165.1 (40S ribosomal protein S30 [Cajanus cajan])

HSP 1 Score: 125.2 bits (313), Expect = 3.4e-25
Identity = 62/64 (96.88%), Postives = 64/64 (100.00%), Query Frame = 0

Query: 41  RFSGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPN 100
           +F+GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPN
Sbjct: 2   QFAGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPN 61

Query: 101 SSEK 105
           SSEK
Sbjct: 62  SSEK 65

BLAST of CcUC03G057180 vs. NCBI nr
Match: KOM44808.1 (hypothetical protein LR48_Vigan06g011400, partial [Vigna angularis])

HSP 1 Score: 125.2 bits (313), Expect = 3.4e-25
Identity = 62/64 (96.88%), Postives = 64/64 (100.00%), Query Frame = 0

Query: 41  RFSGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPN 100
           +F+GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPN
Sbjct: 1   QFAGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPN 60

Query: 101 SSEK 105
           SSEK
Sbjct: 61  SSEK 64

BLAST of CcUC03G057180 vs. NCBI nr
Match: RZR96505.1 (hypothetical protein BHM03_00025534, partial [Ensete ventricosum])

HSP 1 Score: 124.8 bits (312), Expect = 4.4e-25
Identity = 71/96 (73.96%), Postives = 76/96 (79.17%), Query Frame = 0

Query: 10  FLDLRSLLFPVFIGYFICKNLFVNCVYSC-FDRFSGKVHGSLARAGKVRGQTPKVAKQDK 69
           F DLR+L    F        LF+   + C  + FSGKVHGSLARAGKVRGQTPKVAKQDK
Sbjct: 5   FFDLRTLESHGF--------LFLLSSFHCPVNLFSGKVHGSLARAGKVRGQTPKVAKQDK 64

Query: 70  KKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK 105
           KKKPRGRA+KRMQYNRRFVTAVVGFGKKRGPNSSEK
Sbjct: 65  KKKPRGRAYKRMQYNRRFVTAVVGFGKKRGPNSSEK 92

BLAST of CcUC03G057180 vs. NCBI nr
Match: KAG6404511.1 (hypothetical protein SASPL_136760 [Salvia splendens])

HSP 1 Score: 124.8 bits (312), Expect = 4.4e-25
Identity = 62/63 (98.41%), Postives = 63/63 (100.00%), Query Frame = 0

Query: 42  FSGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNS 101
           F+GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNS
Sbjct: 4   FAGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNS 63

Query: 102 SEK 105
           SEK
Sbjct: 64  SEK 66

BLAST of CcUC03G057180 vs. NCBI nr
Match: KAF3454219.1 (hypothetical protein FNV43_RR04666 [Rhamnella rubrinervis])

HSP 1 Score: 124.4 bits (311), Expect = 5.7e-25
Identity = 63/74 (85.14%), Postives = 65/74 (87.84%), Query Frame = 0

Query: 31  FVNCVYSCFDRFSGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAV 90
           F    Y  +   +GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAV
Sbjct: 9   FTTLYYLAYFSSAGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAV 68

Query: 91  VGFGKKRGPNSSEK 105
           VGFGKKRGPNSSEK
Sbjct: 69  VGFGKKRGPNSSEK 82

BLAST of CcUC03G057180 vs. ExPASy Swiss-Prot
Match: P49689 (40S ribosomal protein S30 OS=Arabidopsis thaliana OX=3702 GN=RPS30A PE=3 SV=3)

HSP 1 Score: 118.6 bits (296), Expect = 4.1e-26
Identity = 59/61 (96.72%), Postives = 61/61 (100.00%), Query Frame = 0

Query: 44  GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSE 103
           GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKR+Q+NRRFVTAVVGFGKKRGPNSSE
Sbjct: 2   GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQHNRRFVTAVVGFGKKRGPNSSE 61

Query: 104 K 105
           K
Sbjct: 62  K 62

BLAST of CcUC03G057180 vs. ExPASy Swiss-Prot
Match: P62866 (40S ribosomal protein S30 OS=Bos taurus OX=9913 GN=FAU PE=3 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 4.1e-18
Identity = 46/58 (79.31%), Postives = 51/58 (87.93%), Query Frame = 0

Query: 45  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 103
           KVHGSLARAGKVRGQTPKVAKQ+KKKK  GRA +RMQYNRRFV  V  FGKK+GPN++
Sbjct: 1   KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNAN 58

BLAST of CcUC03G057180 vs. ExPASy Swiss-Prot
Match: P62860 (40S ribosomal protein S30 OS=Cricetulus griseus OX=10029 GN=FAU PE=3 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 4.1e-18
Identity = 46/58 (79.31%), Postives = 51/58 (87.93%), Query Frame = 0

Query: 45  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 103
           KVHGSLARAGKVRGQTPKVAKQ+KKKK  GRA +RMQYNRRFV  V  FGKK+GPN++
Sbjct: 1   KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNAN 58

BLAST of CcUC03G057180 vs. ExPASy Swiss-Prot
Match: P62861 (40S ribosomal protein S30 OS=Homo sapiens OX=9606 GN=FAU PE=1 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 4.1e-18
Identity = 46/58 (79.31%), Postives = 51/58 (87.93%), Query Frame = 0

Query: 45  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 103
           KVHGSLARAGKVRGQTPKVAKQ+KKKK  GRA +RMQYNRRFV  V  FGKK+GPN++
Sbjct: 1   KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNAN 58

BLAST of CcUC03G057180 vs. ExPASy Swiss-Prot
Match: P62862 (40S ribosomal protein S30 OS=Mus musculus OX=10090 GN=Fau PE=1 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 4.1e-18
Identity = 46/58 (79.31%), Postives = 51/58 (87.93%), Query Frame = 0

Query: 45  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 103
           KVHGSLARAGKVRGQTPKVAKQ+KKKK  GRA +RMQYNRRFV  V  FGKK+GPN++
Sbjct: 1   KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNAN 58

BLAST of CcUC03G057180 vs. ExPASy TrEMBL
Match: I1J9W0 (40S ribosomal protein S30 OS=Glycine max OX=3847 GN=GLYMA_01G209400 PE=3 SV=2)

HSP 1 Score: 125.2 bits (313), Expect = 1.6e-25
Identity = 62/64 (96.88%), Postives = 64/64 (100.00%), Query Frame = 0

Query: 41  RFSGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPN 100
           +F+GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPN
Sbjct: 41  QFAGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPN 100

Query: 101 SSEK 105
           SSEK
Sbjct: 101 SSEK 104

BLAST of CcUC03G057180 vs. ExPASy TrEMBL
Match: A0A151TJD2 (40S ribosomal protein S30 OS=Cajanus cajan OX=3821 GN=KK1_013488 PE=3 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.6e-25
Identity = 62/64 (96.88%), Postives = 64/64 (100.00%), Query Frame = 0

Query: 41  RFSGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPN 100
           +F+GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPN
Sbjct: 2   QFAGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPN 61

Query: 101 SSEK 105
           SSEK
Sbjct: 62  SSEK 65

BLAST of CcUC03G057180 vs. ExPASy TrEMBL
Match: A0A0L9UPY5 (40S ribosomal protein S30 (Fragment) OS=Phaseolus angularis OX=3914 GN=LR48_Vigan06g011400 PE=3 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.6e-25
Identity = 62/64 (96.88%), Postives = 64/64 (100.00%), Query Frame = 0

Query: 41  RFSGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPN 100
           +F+GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPN
Sbjct: 1   QFAGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPN 60

Query: 101 SSEK 105
           SSEK
Sbjct: 61  SSEK 64

BLAST of CcUC03G057180 vs. ExPASy TrEMBL
Match: A0A444F7Y5 (40S ribosomal protein S30 OS=Ensete ventricosum OX=4639 GN=GW17_00017242 PE=3 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 3.6e-25
Identity = 71/101 (70.30%), Postives = 78/101 (77.23%), Query Frame = 0

Query: 5   NPNSSFLDLRSLLFPVFIGYFICKNLFVNCVYSC-FDRFSGKVHGSLARAGKVRGQTPKV 64
           +P   +LD  SL  P    +     LF+   + C  + FSGKVHGSLARAGKVRGQTPKV
Sbjct: 7   SPVYKYLDFSSLQNPNRKSHGF---LFLLSSFHCPVNLFSGKVHGSLARAGKVRGQTPKV 66

Query: 65  AKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK 105
           AKQDKKKKPRGRA+KRMQYNRRFVTAVVGFGKKRGPNSSEK
Sbjct: 67  AKQDKKKKPRGRAYKRMQYNRRFVTAVVGFGKKRGPNSSEK 104

BLAST of CcUC03G057180 vs. ExPASy TrEMBL
Match: B9FRR9 (40S ribosomal protein S30 OS=Oryza sativa subsp. japonica OX=39947 GN=OsJ_20291 PE=3 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 3.6e-25
Identity = 62/63 (98.41%), Postives = 62/63 (98.41%), Query Frame = 0

Query: 42  FSGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNS 101
           F GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNS
Sbjct: 112 FPGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNS 171

Query: 102 SEK 105
           SEK
Sbjct: 172 SEK 174

BLAST of CcUC03G057180 vs. TAIR 10
Match: AT2G19750.1 (Ribosomal protein S30 family protein )

HSP 1 Score: 118.6 bits (296), Expect = 2.9e-27
Identity = 59/61 (96.72%), Postives = 61/61 (100.00%), Query Frame = 0

Query: 44  GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSE 103
           GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKR+Q+NRRFVTAVVGFGKKRGPNSSE
Sbjct: 2   GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQHNRRFVTAVVGFGKKRGPNSSE 61

Query: 104 K 105
           K
Sbjct: 62  K 62

BLAST of CcUC03G057180 vs. TAIR 10
Match: AT4G29390.1 (Ribosomal protein S30 family protein )

HSP 1 Score: 118.6 bits (296), Expect = 2.9e-27
Identity = 59/61 (96.72%), Postives = 61/61 (100.00%), Query Frame = 0

Query: 44  GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSE 103
           GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKR+Q+NRRFVTAVVGFGKKRGPNSSE
Sbjct: 2   GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQHNRRFVTAVVGFGKKRGPNSSE 61

Query: 104 K 105
           K
Sbjct: 62  K 62

BLAST of CcUC03G057180 vs. TAIR 10
Match: AT5G56670.1 (Ribosomal protein S30 family protein )

HSP 1 Score: 118.6 bits (296), Expect = 2.9e-27
Identity = 59/61 (96.72%), Postives = 61/61 (100.00%), Query Frame = 0

Query: 44  GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSE 103
           GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKR+Q+NRRFVTAVVGFGKKRGPNSSE
Sbjct: 2   GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQHNRRFVTAVVGFGKKRGPNSSE 61

Query: 104 K 105
           K
Sbjct: 62  K 62

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KYP67165.13.4e-2596.8840S ribosomal protein S30 [Cajanus cajan][more]
KOM44808.13.4e-2596.88hypothetical protein LR48_Vigan06g011400, partial [Vigna angularis][more]
RZR96505.14.4e-2573.96hypothetical protein BHM03_00025534, partial [Ensete ventricosum][more]
KAG6404511.14.4e-2598.41hypothetical protein SASPL_136760 [Salvia splendens][more]
KAF3454219.15.7e-2585.14hypothetical protein FNV43_RR04666 [Rhamnella rubrinervis][more]
Match NameE-valueIdentityDescription
P496894.1e-2696.7240S ribosomal protein S30 OS=Arabidopsis thaliana OX=3702 GN=RPS30A PE=3 SV=3[more]
P628664.1e-1879.3140S ribosomal protein S30 OS=Bos taurus OX=9913 GN=FAU PE=3 SV=1[more]
P628604.1e-1879.3140S ribosomal protein S30 OS=Cricetulus griseus OX=10029 GN=FAU PE=3 SV=1[more]
P628614.1e-1879.3140S ribosomal protein S30 OS=Homo sapiens OX=9606 GN=FAU PE=1 SV=1[more]
P628624.1e-1879.3140S ribosomal protein S30 OS=Mus musculus OX=10090 GN=Fau PE=1 SV=1[more]
Match NameE-valueIdentityDescription
I1J9W01.6e-2596.8840S ribosomal protein S30 OS=Glycine max OX=3847 GN=GLYMA_01G209400 PE=3 SV=2[more]
A0A151TJD21.6e-2596.8840S ribosomal protein S30 OS=Cajanus cajan OX=3821 GN=KK1_013488 PE=3 SV=1[more]
A0A0L9UPY51.6e-2596.8840S ribosomal protein S30 (Fragment) OS=Phaseolus angularis OX=3914 GN=LR48_Viga... [more]
A0A444F7Y53.6e-2570.3040S ribosomal protein S30 OS=Ensete ventricosum OX=4639 GN=GW17_00017242 PE=3 SV... [more]
B9FRR93.6e-2598.4140S ribosomal protein S30 OS=Oryza sativa subsp. japonica OX=39947 GN=OsJ_20291 ... [more]
Match NameE-valueIdentityDescription
AT2G19750.12.9e-2796.72Ribosomal protein S30 family protein [more]
AT4G29390.12.9e-2796.72Ribosomal protein S30 family protein [more]
AT5G56670.12.9e-2796.72Ribosomal protein S30 family protein [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006846Ribosomal protein S30PFAMPF04758Ribosomal_S30coord: 45..101
e-value: 7.6E-30
score: 102.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 56..78
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 64..78
NoneNo IPR availablePANTHERPTHR1265040S RIBOSOMAL PROTEIN S30/UBIQUITIN-LIKE PROTEIN FUBIcoord: 44..104
NoneNo IPR availablePANTHERPTHR12650:SF2840S RIBOSOMAL PROTEIN S30coord: 44..104

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC03G057180.1CcUC03G057180.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
molecular_function GO:0020037 heme binding
molecular_function GO:0005506 iron ion binding
molecular_function GO:0004497 monooxygenase activity
molecular_function GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
molecular_function GO:0003735 structural constituent of ribosome