CcUC02G030040 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC02G030040
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	B3 domain-containing transcription factor VRN1-like
Location	CicolChr02: 25334798 .. 25335307 (+)
RNA-Seq Expression	CcUC02G030040
Synteny	CcUC02G030040

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GCCAACAAAGTGAGAAATAAAGGGATGATTTCGAGGAAGAAACGATTAACCACAACCGAAGAAGCAAGAATAATGATTGAAAAAGCCTCGAAATTCAAAGCAATAACTACACATCCTTCTTTTATGATCATAATGAAACCTTCATACCTCCATGCAAGCAATAATTATCCAATAAGTTATGTTTTATAGTTTTTATTTGTTCTTAAAAGTTACTCCGAAACATACTTTTAATTAAACTAATCTTATTCAATTGGTTGTAGAGTATTCCAAGAGAGCTTGCAAATACCCACCTGAAGGAAACCAAAAACTTAATTCTTCTTGTTTCAGATGAAAAGGTTTGGAAGATATGTTACATCCAACGTTGGTGTCATGGAATACGAAGGTTTGTCGCAAAGGTTTGAAATGACAAGAGATAATAGTTTTAAAAAAAAAGATGATATTTGTGTTTTTGAGTTAATGAAAAACATTCAAATATCATTTAAAGCTACAATTTTTCGATTGCCTATGTGA

mRNA sequence

GCCAACAAAGTGAGAAATAAAGGGATGATTTCGAGGAAGAAACGATTAACCACAACCGAAGAAGCAAGAATAATGATTGAAAAAGCCTCGAAATTCAAAGCAATAACTACACATCCTTCTTTTATGATCATAATGAAACCTTCATACCTCCATGCAAGCAATAATTATCCAATAAGTTATAGTATTCCAAGAGAGCTTGCAAATACCCACCTGAAGGAAACCAAAAACTTAATTCTTCTTATGAAAAGGTTTGGAAGATATGTTACATCCAACGTTGGTGTCATGGAATACGAAGGTTTGTCGCAAAGGTTTGAAATGACAAGAGATAATAGTTTTAAAAAAAAAGATGATATTTGTGTTTTTGAGTTAATGAAAAACATTCAAATATCATTTAAAGCTACAATTTTTCGATTGCCTATGTGA

Coding sequence (CDS)

GCCAACAAAGTGAGAAATAAAGGGATGATTTCGAGGAAGAAACGATTAACCACAACCGAAGAAGCAAGAATAATGATTGAAAAAGCCTCGAAATTCAAAGCAATAACTACACATCCTTCTTTTATGATCATAATGAAACCTTCATACCTCCATGCAAGCAATAATTATCCAATAAGTTATAGTATTCCAAGAGAGCTTGCAAATACCCACCTGAAGGAAACCAAAAACTTAATTCTTCTTATGAAAAGGTTTGGAAGATATGTTACATCCAACGTTGGTGTCATGGAATACGAAGGTTTGTCGCAAAGGTTTGAAATGACAAGAGATAATAGTTTTAAAAAAAAAGATGATATTTGTGTTTTTGAGTTAATGAAAAACATTCAAATATCATTTAAAGCTACAATTTTTCGATTGCCTATGTGA

Protein sequence

ANKVRNKGMISRKKRLTTTEEARIMIEKASKFKAITTHPSFMIIMKPSYLHASNNYPISYSIPRELANTHLKETKNLILLMKRFGRYVTSNVGVMEYEGLSQRFEMTRDNSFKKKDDICVFELMKNIQISFKATIFRLPM

Homology

[Close]

BLAST of CcUC02G030040 vs. NCBI nr
Match: XP_016902166.1 (PREDICTED: B3 domain-containing transcription factor VRN1-like [Cucumis melo])

HSP 1 Score: 87.4 bits (215), Expect = 1.0e-13
Identity = 65/136 (47.79%), Postives = 79/136 (58.09%), Query Frame = 0


Query: 13  KKRLTTTEEARIMIEKASKFKAITTHPSFMIIMKPSYLHASNNYPISYSIPRELANTHLK 72
           KK    ++ +  +  KASKFK ITT+PSFM+ M  SYLH SN      +IP   A+T+LK
Sbjct: 147 KKGKIWSKRSSTIFAKASKFKEITTNPSFMVTMGRSYLHTSN-----LNIPTGFASTYLK 206

Query: 73  ETKNLILLMKRFGRYVTSNVGVME--YEGLSQRFEM-------TRDNSFKKKDDICVFEL 132
           ETK+LIL +    + V   + V    Y    QRFEM        RDNS  K+ DICVFEL
Sbjct: 207 ETKDLILYVSSDDQKVWKILCVERWLYARSCQRFEMAKGWREFARDNSL-KEGDICVFEL 266

Query: 133 MKNIQ--ISFKATIFR 138
           MKNIQ    FK TIFR
Sbjct: 267 MKNIQKMSLFKTTIFR 276

[Close]

BLAST of CcUC02G030040 vs. NCBI nr
Match: XP_022928091.1 (B3 domain-containing transcription factor VRN1-like [Cucurbita moschata])

HSP 1 Score: 75.5 bits (184), Expect = 4.1e-10
Identity = 51/135 (37.78%), Postives = 76/135 (56.30%), Query Frame = 0


Query: 8   GMISRKKRLTTTEEARIMIEKASKFKAITTHPSFMIIMKPSYLHASNNYPISYSIPRELA 67
           G + +++R + +EE       A+KF+++TT+PSFM+ M  SYLH   +Y    SIP+  A
Sbjct: 117 GKVKKRERFSISEE-------ATKFQSLTTNPSFMVTMGASYLHTGKSY---LSIPQWFA 176

Query: 68  NTHLKETKNLILLMK--RFGRYVTSN---VGVMEYEGLSQRFEMTRDNSFKKKDDICVFE 127
           N H++  K + + +   R  + +       GV   E      +  RDN   KK DICVFE
Sbjct: 177 NAHMESPKEMSVEVSDGRVWKILCGERWPHGVKRVEMRGGWRDFARDNGL-KKGDICVFE 236

Query: 128 LMKNIQISFKATIFR 138
           LM+  ++SFKATIFR
Sbjct: 237 LMETSELSFKATIFR 240

[Close]

BLAST of CcUC02G030040 vs. NCBI nr
Match: KAG7011178.1 (B3 domain-containing transcription factor VRN1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 75.5 bits (184), Expect = 4.1e-10
Identity = 51/135 (37.78%), Postives = 76/135 (56.30%), Query Frame = 0


Query: 8   GMISRKKRLTTTEEARIMIEKASKFKAITTHPSFMIIMKPSYLHASNNYPISYSIPRELA 67
           G + +++R + +EE       A+KF+++TT+PSFM+ M  SYLH   +Y    SIP+  A
Sbjct: 145 GKVKKRERFSISEE-------ATKFQSLTTNPSFMVTMGASYLHTGKSY---LSIPQWFA 204

Query: 68  NTHLKETKNLILLMK--RFGRYVTSN---VGVMEYEGLSQRFEMTRDNSFKKKDDICVFE 127
           N H++  K + + +   R  + +       GV   E      +  RDN   KK DICVFE
Sbjct: 205 NAHIESPKEMSVEVSDGRVWKILCGERWPHGVKRVEMRGGWRDFARDNGL-KKGDICVFE 264

Query: 128 LMKNIQISFKATIFR 138
           LM+  ++SFKATIFR
Sbjct: 265 LMETSELSFKATIFR 268

[Close]

BLAST of CcUC02G030040 vs. NCBI nr
Match: KAG6571413.1 (B3 domain-containing transcription factor VRN1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 75.5 bits (184), Expect = 4.1e-10
Identity = 51/135 (37.78%), Postives = 76/135 (56.30%), Query Frame = 0


Query: 8   GMISRKKRLTTTEEARIMIEKASKFKAITTHPSFMIIMKPSYLHASNNYPISYSIPRELA 67
           G + +++R + +EE       A+KF+++TT+PSFM+ M  SYLH   +Y    SIP+  A
Sbjct: 117 GKVKKRERFSISEE-------ATKFQSLTTNPSFMVTMGASYLHTGKSY---LSIPQWFA 176

Query: 68  NTHLKETKNLILLMK--RFGRYVTSN---VGVMEYEGLSQRFEMTRDNSFKKKDDICVFE 127
           N H++  K + + +   R  + +       GV   E      +  RDN   KK DICVFE
Sbjct: 177 NAHIESPKEMSVEVSDGRVWKILCGERWPHGVKRVEMRGGWRDFARDNGL-KKGDICVFE 236

Query: 128 LMKNIQISFKATIFR 138
           LM+  ++SFKATIFR
Sbjct: 237 LMETSELSFKATIFR 240

[Close]

BLAST of CcUC02G030040 vs. NCBI nr
Match: XP_022971710.1 (B3 domain-containing transcription factor VRN1-like [Cucurbita maxima])

HSP 1 Score: 74.7 bits (182), Expect = 7.0e-10
Identity = 52/135 (38.52%), Postives = 75/135 (55.56%), Query Frame = 0


Query: 8   GMISRKKRLTTTEEARIMIEKASKFKAITTHPSFMIIMKPSYLHASNNYPISYSIPRELA 67
           G + +++R + TEE       A+KF+++T +PSFM+ M  SYLH   +Y    SIP   A
Sbjct: 117 GKVKKRERFSITEE-------ATKFQSLTMNPSFMVTMGASYLHTGKSY---LSIPLWFA 176

Query: 68  NTHLKETK--NLILLMKRFGRYVTSN---VGVMEYEGLSQRFEMTRDNSFKKKDDICVFE 127
           N H++  K  N+ +   R  + +      +GV   E      +  RDN   KK DICVFE
Sbjct: 177 NAHMESPKEMNVEVSDGRVWKILCGERWPLGVKRVEMRGGWRDFARDNGL-KKGDICVFE 236

Query: 128 LMKNIQISFKATIFR 138
           LM+  ++SFKATIFR
Sbjct: 237 LMETSELSFKATIFR 240

[Close]

BLAST of CcUC02G030040 vs. ExPASy TrEMBL
Match: A0A1S4E1R2 (B3 domain-containing transcription factor VRN1-like OS=Cucumis melo OX=3656 GN=LOC107991566 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 5.1e-14
Identity = 65/136 (47.79%), Postives = 79/136 (58.09%), Query Frame = 0


Query: 13  KKRLTTTEEARIMIEKASKFKAITTHPSFMIIMKPSYLHASNNYPISYSIPRELANTHLK 72
           KK    ++ +  +  KASKFK ITT+PSFM+ M  SYLH SN      +IP   A+T+LK
Sbjct: 147 KKGKIWSKRSSTIFAKASKFKEITTNPSFMVTMGRSYLHTSN-----LNIPTGFASTYLK 206

Query: 73  ETKNLILLMKRFGRYVTSNVGVME--YEGLSQRFEM-------TRDNSFKKKDDICVFEL 132
           ETK+LIL +    + V   + V    Y    QRFEM        RDNS  K+ DICVFEL
Sbjct: 207 ETKDLILYVSSDDQKVWKILCVERWLYARSCQRFEMAKGWREFARDNSL-KEGDICVFEL 266

Query: 133 MKNIQ--ISFKATIFR 138
           MKNIQ    FK TIFR
Sbjct: 267 MKNIQKMSLFKTTIFR 276

[Close]

BLAST of CcUC02G030040 vs. ExPASy TrEMBL
Match: A0A6J1EJA7 (B3 domain-containing transcription factor VRN1-like OS=Cucurbita moschata OX=3662 GN=LOC111434979 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 2.0e-10
Identity = 51/135 (37.78%), Postives = 76/135 (56.30%), Query Frame = 0


Query: 8   GMISRKKRLTTTEEARIMIEKASKFKAITTHPSFMIIMKPSYLHASNNYPISYSIPRELA 67
           G + +++R + +EE       A+KF+++TT+PSFM+ M  SYLH   +Y    SIP+  A
Sbjct: 117 GKVKKRERFSISEE-------ATKFQSLTTNPSFMVTMGASYLHTGKSY---LSIPQWFA 176

Query: 68  NTHLKETKNLILLMK--RFGRYVTSN---VGVMEYEGLSQRFEMTRDNSFKKKDDICVFE 127
           N H++  K + + +   R  + +       GV   E      +  RDN   KK DICVFE
Sbjct: 177 NAHMESPKEMSVEVSDGRVWKILCGERWPHGVKRVEMRGGWRDFARDNGL-KKGDICVFE 236

Query: 128 LMKNIQISFKATIFR 138
           LM+  ++SFKATIFR
Sbjct: 237 LMETSELSFKATIFR 240

[Close]

BLAST of CcUC02G030040 vs. ExPASy TrEMBL
Match: A0A6J1I6H9 (B3 domain-containing transcription factor VRN1-like OS=Cucurbita maxima OX=3661 GN=LOC111470377 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 3.4e-10
Identity = 52/135 (38.52%), Postives = 75/135 (55.56%), Query Frame = 0


Query: 8   GMISRKKRLTTTEEARIMIEKASKFKAITTHPSFMIIMKPSYLHASNNYPISYSIPRELA 67
           G + +++R + TEE       A+KF+++T +PSFM+ M  SYLH   +Y    SIP   A
Sbjct: 117 GKVKKRERFSITEE-------ATKFQSLTMNPSFMVTMGASYLHTGKSY---LSIPLWFA 176

Query: 68  NTHLKETK--NLILLMKRFGRYVTSN---VGVMEYEGLSQRFEMTRDNSFKKKDDICVFE 127
           N H++  K  N+ +   R  + +      +GV   E      +  RDN   KK DICVFE
Sbjct: 177 NAHMESPKEMNVEVSDGRVWKILCGERWPLGVKRVEMRGGWRDFARDNGL-KKGDICVFE 236

Query: 128 LMKNIQISFKATIFR 138
           LM+  ++SFKATIFR
Sbjct: 237 LMETSELSFKATIFR 240

[Close]

BLAST of CcUC02G030040 vs. ExPASy TrEMBL
Match: A0A6J1E0D8 (B3 domain-containing protein At4g01580-like OS=Momordica charantia OX=3673 GN=LOC111024773 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 2.4e-08
Identity = 50/133 (37.59%), Postives = 72/133 (54.14%), Query Frame = 0


Query: 12  RKKRLTTTEEARIMIEKASKFKAITTHPSFMIIMKPSYLHASNNYPISYSIPRELANTHL 71
           R K +      R + E+AS F+++T + SFMI M PSY+H     P   +IP+  A  H+
Sbjct: 186 RLKVIKCENGLRSVTERASTFQSMTPNHSFMITMGPSYIHTGKGDP---NIPKSFAKIHV 245

Query: 72  KETKNLILLMKRFGRYVTSNVGVMEYEGLSQRFEM-------TRDNSFKKKDDICVFELM 131
           K+++  I L    GR      GV   + +++  EM        RDNS  ++  ICVFELM
Sbjct: 246 KKSQE-ISLEDSDGRVWKIWCGVRPSQNVNKSVEMRGGWKAFARDNSL-EEGHICVFELM 305

Query: 132 KNIQISFKATIFR 138
           K  ++SFK TIFR
Sbjct: 306 KGTKLSFKVTIFR 313

[Close]

BLAST of CcUC02G030040 vs. ExPASy TrEMBL
Match: A0A0A0LM04 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G287160 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.7e-06
Identity = 51/140 (36.43%), Postives = 74/140 (52.86%), Query Frame = 0


Query: 9   MISRKKRLTTTEEARIMIEKASKFKAITTHPSFMIIMKPSYLHASNNYPISYSIPRELAN 68
           M  RK +   TE   +++ +AS FK  T +PSFM+ M+PSY+   N      S+PR  + 
Sbjct: 222 MNPRKTQQVLTENQLVVVRRASSFKCRTKNPSFMVTMRPSYIQTGN----CLSLPRIFSE 281

Query: 69  THLKETKNLILLMKRFGRYVTSNVGV--------MEYEGLSQRFEMTRDNSFKKKDDICV 128
            ++KE+ + + L    GR      GV         E +G  +RF +  DN   ++ DICV
Sbjct: 282 RYIKESVD-VKLEVGDGRIWKVWCGVRWAFTRRRTELKGGWKRFAV--DNEL-EEGDICV 341

Query: 129 FELM-KNIQISFKATIFRLP 140
           FELM K  ++ F  TIFRLP
Sbjct: 342 FELMNKTPKVHFLVTIFRLP 353

The following BLAST results are available for this feature:

BLAST of CcUC02G030040 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016902166.1	1.0e-13	47.79	PREDICTED: B3 domain-containing transcription factor VRN1-like [Cucumis melo]	[more]
XP_022928091.1	4.1e-10	37.78	B3 domain-containing transcription factor VRN1-like [Cucurbita moschata]	[more]
KAG7011178.1	4.1e-10	37.78	B3 domain-containing transcription factor VRN1, partial [Cucurbita argyrosperma ...	[more]
KAG6571413.1	4.1e-10	37.78	B3 domain-containing transcription factor VRN1, partial [Cucurbita argyrosperma ...	[more]
XP_022971710.1	7.0e-10	38.52	B3 domain-containing transcription factor VRN1-like [Cucurbita maxima]	[more]

BLAST of CcUC02G030040 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC02G030040 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4E1R2	5.1e-14	47.79	B3 domain-containing transcription factor VRN1-like OS=Cucumis melo OX=3656 GN=L...	[more]
A0A6J1EJA7	2.0e-10	37.78	B3 domain-containing transcription factor VRN1-like OS=Cucurbita moschata OX=366...	[more]
A0A6J1I6H9	3.4e-10	38.52	B3 domain-containing transcription factor VRN1-like OS=Cucurbita maxima OX=3661 ...	[more]
A0A6J1E0D8	2.4e-08	37.59	B3 domain-containing protein At4g01580-like OS=Momordica charantia OX=3673 GN=LO...	[more]
A0A0A0LM04	1.7e-06	36.43	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G287160 PE=4 SV=1	[more]

BLAST of CcUC02G030040 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR015300	DNA-binding pseudobarrel domain superfamily	GENE3D	2.40.330.10		coord: 16..138 e-value: 3.9E-12 score: 48.0
IPR015300	DNA-binding pseudobarrel domain superfamily	SUPERFAMILY	101936	DNA-binding pseudobarrel domain	coord: 37..137

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC02G030040.1	CcUC02G030040.1	mRNA