CcUC02G025420 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC02G025420
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Ycf15
Location	CicolChr02: 9941080 .. 9941385 (-)
RNA-Seq Expression	CcUC02G025420
Synteny	CcUC02G025420

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCGGATGAAATGGTTGTTGCTATCTGTTACAATAACGAATCATTGGTTTAACTGAATAACTAAATAAAATAGATAGACCCTTTTCTTCGTCTTAGGTCGACAGATCTTCTCCATTGAAAGATCCCCTATATGGATAATACACATCCAGTTCAACGAGCCTAATTCTAATTGTTTTGTTCCGAAGCAAACCACGGGGCAGTTCGTCCTATTCAGATATTCACGACCAAGAAACACTGGATTCTCTTTCGGGTAGGCCCTGAAAGGAGAAGGAAGGCTGGAATGCCAACAGGCCTCTATTATTGA

mRNA sequence

ATGCCGGATGAAATGGTTGTTGCTATCTGTTACAATAACGAATCATTGATATTCACGACCAAGAAACACTGGATTCTCTTTCGGGTAGGCCCTGAAAGGAGAAGGAAGGCTGGAATGCCAACAGGCCTCTATTATTGA

Coding sequence (CDS)

ATGCCGGATGAAATGGTTGTTGCTATCTGTTACAATAACGAATCATTGATATTCACGACCAAGAAACACTGGATTCTCTTTCGGGTAGGCCCTGAAAGGAGAAGGAAGGCTGGAATGCCAACAGGCCTCTATTATTGA

Protein sequence

MPDEMVVAICYNNESLIFTTKKHWILFRVGPERRRKAGMPTGLYY

Homology

[Close]

BLAST of CcUC02G025420 vs. NCBI nr
Match: RWR98153.1 (hypothetical protein CKAN_02765500 [Cinnamomum micranthum f. kanehirae])

HSP 1 Score: 73.2 bits (178), Expect = 6.6e-10
Identity = 35/55 (63.64%), Postives = 40/55 (72.73%), Query Frame = 0


Query: 1  MPDEMVVAICYNNES----------LIFTTKKHWILFRVGPERRRKAGMPTGLYY 46
          M DEMVVAIC NNE            IFTT+++WILFR+GPERRRKAGMPT +YY
Sbjct: 38 MSDEMVVAICSNNEEWISTGPVRLIQIFTTERYWILFRIGPERRRKAGMPTYVYY 92

[Close]

BLAST of CcUC02G025420 vs. NCBI nr
Match: QIB71551.1 (Ycf15 [Siraitia grosvenorii] >QIB71570.1 Ycf15 [Siraitia grosvenorii])

HSP 1 Score: 68.6 bits (166), Expect = 1.6e-08
Identity = 29/30 (96.67%), Postives = 30/30 (100.00%), Query Frame = 0


Query: 16 LIFTTKKHWILFRVGPERRRKAGMPTGLYY 46
          LIFTTKKHWILFRVGPERRRKAGMPTG+YY
Sbjct: 53 LIFTTKKHWILFRVGPERRRKAGMPTGVYY 82

[Close]

BLAST of CcUC02G025420 vs. NCBI nr
Match: QTT58051.1 (hypothetical protein RF15 [Clethra fargesii] >QTT58068.1 hypothetical protein RF15 [Clethra fargesii])

HSP 1 Score: 67.8 bits (164), Expect = 2.8e-08
Identity = 28/34 (82.35%), Postives = 32/34 (94.12%), Query Frame = 0


Query: 12 NNESLIFTTKKHWILFRVGPERRRKAGMPTGLYY 46
          N+E  IFTTKK+WILFR+GPERRRKAGMPTG+YY
Sbjct: 47 NSELQIFTTKKYWILFRIGPERRRKAGMPTGVYY 80

[Close]

BLAST of CcUC02G025420 vs. NCBI nr
Match: YP_009653461.1 (Ycf15 protein [Forestiera angustifolia] >YP_009653479.1 Ycf15 protein [Forestiera angustifolia] >YP_009653637.1 Ycf15 protein [Forestiera phillyreoides] >YP_009653655.1 Ycf15 protein [Forestiera phillyreoides] >YP_009653725.1 Ycf15 protein [Forestiera segregata] >YP_009653743.1 Ycf15 protein [Forestiera segregata] >QCG71022.1 Ycf15 protein [Forestiera angustifolia] >QCG71023.1 Ycf15 protein [Forestiera angustifolia] >QCG71198.1 Ycf15 protein [Forestiera phillyreoides] >QCG71199.1 Ycf15 protein [Forestiera phillyreoides] >QCG71374.1 Ycf15 protein [Forestiera segregata])

HSP 1 Score: 67.8 bits (164), Expect = 2.8e-08
Identity = 28/34 (82.35%), Postives = 32/34 (94.12%), Query Frame = 0


Query: 12 NNESLIFTTKKHWILFRVGPERRRKAGMPTGLYY 46
          N+E  IFTTKK+WILFR+GPERRRKAGMPTG+YY
Sbjct: 14 NSELQIFTTKKYWILFRIGPERRRKAGMPTGVYY 47

[Close]

BLAST of CcUC02G025420 vs. NCBI nr
Match: YP_009676143.1 (hypothetical chloroplast RF15 [Berchemiella wilsonii] >QDE13062.1 hypothetical chloroplast RF15 [Berchemiella wilsonii])

HSP 1 Score: 67.0 bits (162), Expect = 4.7e-08
Identity = 28/32 (87.50%), Postives = 31/32 (96.88%), Query Frame = 0


Query: 14 ESLIFTTKKHWILFRVGPERRRKAGMPTGLYY 46
          E LIFTTKK+WILFR+GPERRRKAGMPTG+YY
Sbjct: 52 ELLIFTTKKYWILFRIGPERRRKAGMPTGVYY 83

[Close]

BLAST of CcUC02G025420 vs. ExPASy Swiss-Prot
Match: Q7FNR5 (Putative uncharacterized protein ycf15 OS=Atropa belladonna OX=33113 GN=ycf15-A PE=5 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 4.0e-10
Identity = 26/29 (89.66%), Postives = 29/29 (100.00%), Query Frame = 0


Query: 17 IFTTKKHWILFRVGPERRRKAGMPTGLYY 46
          IFTTKK+WILFR+GPERRRKAGMPTG+YY
Sbjct: 37 IFTTKKYWILFRIGPERRRKAGMPTGVYY 65

[Close]

BLAST of CcUC02G025420 vs. ExPASy Swiss-Prot
Match: Q3C1N3 (Putative uncharacterized protein ycf15 OS=Nicotiana sylvestris OX=4096 GN=ycf15-A PE=5 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 4.0e-10
Identity = 26/29 (89.66%), Postives = 29/29 (100.00%), Query Frame = 0


Query: 17 IFTTKKHWILFRVGPERRRKAGMPTGLYY 46
          IFTTKK+WILFR+GPERRRKAGMPTG+YY
Sbjct: 54 IFTTKKYWILFRIGPERRRKAGMPTGVYY 82

[Close]

BLAST of CcUC02G025420 vs. ExPASy Swiss-Prot
Match: Q33BV4 (Putative uncharacterized protein ycf15 OS=Nicotiana tomentosiformis OX=4098 GN=ycf15-A PE=5 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 4.0e-10
Identity = 26/29 (89.66%), Postives = 29/29 (100.00%), Query Frame = 0


Query: 17 IFTTKKHWILFRVGPERRRKAGMPTGLYY 46
          IFTTKK+WILFR+GPERRRKAGMPTG+YY
Sbjct: 54 IFTTKKYWILFRIGPERRRKAGMPTGVYY 82

[Close]

BLAST of CcUC02G025420 vs. ExPASy Swiss-Prot
Match: Q2MIE3 (Putative uncharacterized protein ycf15 OS=Solanum bulbocastanum OX=147425 GN=ycf15-A PE=5 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 4.0e-10
Identity = 26/29 (89.66%), Postives = 29/29 (100.00%), Query Frame = 0


Query: 17 IFTTKKHWILFRVGPERRRKAGMPTGLYY 46
          IFTTKK+WILFR+GPERRRKAGMPTG+YY
Sbjct: 54 IFTTKKYWILFRIGPERRRKAGMPTGVYY 82

[Close]

BLAST of CcUC02G025420 vs. ExPASy Swiss-Prot
Match: Q2VED6 (Putative uncharacterized protein ycf15 OS=Solanum tuberosum OX=4113 GN=ycf15-A PE=5 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 4.0e-10
Identity = 26/29 (89.66%), Postives = 29/29 (100.00%), Query Frame = 0


Query: 17 IFTTKKHWILFRVGPERRRKAGMPTGLYY 46
          IFTTKK+WILFR+GPERRRKAGMPTG+YY
Sbjct: 54 IFTTKKYWILFRIGPERRRKAGMPTGVYY 82

[Close]

BLAST of CcUC02G025420 vs. ExPASy TrEMBL
Match: A0A443Q561 (Uncharacterized protein OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_02765500 PE=3 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 3.2e-10
Identity = 35/55 (63.64%), Postives = 40/55 (72.73%), Query Frame = 0


Query: 1  MPDEMVVAICYNNES----------LIFTTKKHWILFRVGPERRRKAGMPTGLYY 46
          M DEMVVAIC NNE            IFTT+++WILFR+GPERRRKAGMPT +YY
Sbjct: 38 MSDEMVVAICSNNEEWISTGPVRLIQIFTTERYWILFRIGPERRRKAGMPTYVYY 92

[Close]

BLAST of CcUC02G025420 vs. ExPASy TrEMBL
Match: A0A6C0U8L9 (Ycf15 OS=Siraitia grosvenorii OX=190515 GN=ycf15 PE=3 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 7.8e-09
Identity = 29/30 (96.67%), Postives = 30/30 (100.00%), Query Frame = 0


Query: 16 LIFTTKKHWILFRVGPERRRKAGMPTGLYY 46
          LIFTTKKHWILFRVGPERRRKAGMPTG+YY
Sbjct: 53 LIFTTKKHWILFRVGPERRRKAGMPTGVYY 82

[Close]

BLAST of CcUC02G025420 vs. ExPASy TrEMBL
Match: A0A4D6SWX7 (Uncharacterized protein ycf15 OS=Forestiera segregata OX=126416 GN=ycf15 PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.3e-08
Identity = 28/34 (82.35%), Postives = 32/34 (94.12%), Query Frame = 0


Query: 12 NNESLIFTTKKHWILFRVGPERRRKAGMPTGLYY 46
          N+E  IFTTKK+WILFR+GPERRRKAGMPTG+YY
Sbjct: 14 NSELQIFTTKKYWILFRIGPERRRKAGMPTGVYY 47

[Close]

BLAST of CcUC02G025420 vs. ExPASy TrEMBL
Match: A0A4D6T395 (Uncharacterized protein ycf15 OS=Forestiera phillyreoides OX=2491097 GN=ycf15 PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.3e-08
Identity = 28/34 (82.35%), Postives = 32/34 (94.12%), Query Frame = 0


Query: 12 NNESLIFTTKKHWILFRVGPERRRKAGMPTGLYY 46
          N+E  IFTTKK+WILFR+GPERRRKAGMPTG+YY
Sbjct: 14 NSELQIFTTKKYWILFRIGPERRRKAGMPTGVYY 47

[Close]

BLAST of CcUC02G025420 vs. ExPASy TrEMBL
Match: A0A4D6SVT8 (Uncharacterized protein ycf15 OS=Forestiera angustifolia OX=389174 GN=ycf15 PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.3e-08
Identity = 28/34 (82.35%), Postives = 32/34 (94.12%), Query Frame = 0


Query: 12 NNESLIFTTKKHWILFRVGPERRRKAGMPTGLYY 46
          N+E  IFTTKK+WILFR+GPERRRKAGMPTG+YY
Sbjct: 14 NSELQIFTTKKYWILFRIGPERRRKAGMPTGVYY 47

The following BLAST results are available for this feature:

BLAST of CcUC02G025420 vs. NCBI nr


Match Name	E-value	Identity	Description
RWR98153.1	6.6e-10	63.64	hypothetical protein CKAN_02765500 [Cinnamomum micranthum f. kanehirae]	[more]
QIB71551.1	1.6e-08	96.67	Ycf15 [Siraitia grosvenorii] >QIB71570.1 Ycf15 [Siraitia grosvenorii]	[more]
QTT58051.1	2.8e-08	82.35	hypothetical protein RF15 [Clethra fargesii] >QTT58068.1 hypothetical protein RF...	[more]
YP_009653461.1	2.8e-08	82.35	Ycf15 protein [Forestiera angustifolia] >YP_009653479.1 Ycf15 protein [Forestier...	[more]
YP_009676143.1	4.7e-08	87.50	hypothetical chloroplast RF15 [Berchemiella wilsonii] >QDE13062.1 hypothetical c...	[more]

BLAST of CcUC02G025420 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q7FNR5	4.0e-10	89.66	Putative uncharacterized protein ycf15 OS=Atropa belladonna OX=33113 GN=ycf15-A ...	[more]
Q3C1N3	4.0e-10	89.66	Putative uncharacterized protein ycf15 OS=Nicotiana sylvestris OX=4096 GN=ycf15-...	[more]
Q33BV4	4.0e-10	89.66	Putative uncharacterized protein ycf15 OS=Nicotiana tomentosiformis OX=4098 GN=y...	[more]
Q2MIE3	4.0e-10	89.66	Putative uncharacterized protein ycf15 OS=Solanum bulbocastanum OX=147425 GN=ycf...	[more]
Q2VED6	4.0e-10	89.66	Putative uncharacterized protein ycf15 OS=Solanum tuberosum OX=4113 GN=ycf15-A P...	[more]

BLAST of CcUC02G025420 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A443Q561	3.2e-10	63.64	Uncharacterized protein OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_...	[more]
A0A6C0U8L9	7.8e-09	96.67	Ycf15 OS=Siraitia grosvenorii OX=190515 GN=ycf15 PE=3 SV=1	[more]
A0A4D6SWX7	1.3e-08	82.35	Uncharacterized protein ycf15 OS=Forestiera segregata OX=126416 GN=ycf15 PE=3 SV...	[more]
A0A4D6T395	1.3e-08	82.35	Uncharacterized protein ycf15 OS=Forestiera phillyreoides OX=2491097 GN=ycf15 PE...	[more]
A0A4D6SVT8	1.3e-08	82.35	Uncharacterized protein ycf15 OS=Forestiera angustifolia OX=389174 GN=ycf15 PE=3...	[more]

BLAST of CcUC02G025420 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019645	Uncharacterised protein family Ycf15	PFAM	PF10705	Ycf15	coord: 16..45 e-value: 1.7E-14 score: 53.8

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC02G025420.1	CcUC02G025420.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009507	chloroplast