CcUC01G009580 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC01G009580
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionProline-rich protein HaeIII subfamily 1-like
LocationCicolChr01: 11545709 .. 11545966 (+)
RNA-Seq ExpressionCcUC01G009580
SyntenyCcUC01G009580
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAATCATTGGTATTACACATGTATTGAGTGACCTGAGTATAAAACATCCAAAAAGGCATATCCGTTTCTCAACAGGGAAACCCAAGAACATACTTGACTTAGATCCACCTTTCAGCGTGGGGACACTATCGAAAGAAGAGCGCACTACCCCGTCCGGACCGAGTCCAAGAACTTCGGACAAGCCACCTCCTCCACTGCATGTCTCGTCCACCATTTTGCATAAGCAATCTAGCATCAACTTCAAAATGTTATAG

mRNA sequence

ATGGGAATCATTGGTATTACACATGTATTGAGTGACCTGAGTATAAAACATCCAAAAAGGCATATCCGTTTCTCAACAGGGAAACCCAAGAACATACTTGACTTAGATCCACCTTTCAGCGTGGGGACACTATCGAAAGAAGAGCGCACTACCCCGTCCGGACCGAGTCCAAGAACTTCGGACAAGCCACCTCCTCCACTGCATGTCTCGTCCACCATTTTGCATAAGCAATCTAGCATCAACTTCAAAATGTTATAG

Coding sequence (CDS)

ATGGGAATCATTGGTATTACACATGTATTGAGTGACCTGAGTATAAAACATCCAAAAAGGCATATCCGTTTCTCAACAGGGAAACCCAAGAACATACTTGACTTAGATCCACCTTTCAGCGTGGGGACACTATCGAAAGAAGAGCGCACTACCCCGTCCGGACCGAGTCCAAGAACTTCGGACAAGCCACCTCCTCCACTGCATGTCTCGTCCACCATTTTGCATAAGCAATCTAGCATCAACTTCAAAATGTTATAG

Protein sequence

MGIIGITHVLSDLSIKHPKRHIRFSTGKPKNILDLDPPFSVGTLSKEERTTPSGPSPRTSDKPPPPLHVSSTILHKQSSINFKML
Homology
BLAST of CcUC01G009580 vs. NCBI nr
Match: XP_038882352.1 (uncharacterized protein LOC120073615 [Benincasa hispida])

HSP 1 Score: 102.8 bits (255), Expect = 1.5e-18
Identity = 53/80 (66.25%), Postives = 60/80 (75.00%), Query Frame = 0

Query: 6   ITHVLSDLSIKHPKRHIRFSTGKPKNILDLDPPFSVGTLSKEERTTPSGPSPRTSDKPPP 65
           I + LSD +IKHPKRHI FS GK K I DL PPF++G LSKEER  PSG S  TSD PPP
Sbjct: 43  IENELSDENIKHPKRHIHFSLGKYKRIPDLAPPFNLGILSKEERVPPSGLSQSTSDNPPP 102

Query: 66  PLHVSSTILHKQSSINFKML 86
           P HV S ILHK+S INF++L
Sbjct: 103 PPHVISIILHKESRINFRVL 122

BLAST of CcUC01G009580 vs. NCBI nr
Match: KAA0038012.1 (hypothetical protein E6C27_scaffold36G002040 [Cucumis melo var. makuwa] >TYK02206.1 hypothetical protein E5676_scaffold2454G00110 [Cucumis melo var. makuwa])

HSP 1 Score: 82.0 bits (201), Expect = 2.7e-12
Identity = 43/70 (61.43%), Postives = 48/70 (68.57%), Query Frame = 0

Query: 16  KHPKRHIRFSTGKPKNILDLDPPFSVGTLSKEERTTPSGPSPRTSDKPPPPLHVSSTILH 75
           KHPK HIRFS  KPK + DL PPFS+G LSK+ RT PSG S RT D P  P HV   ILH
Sbjct: 148 KHPKSHIRFSWPKPKRVPDLAPPFSLGILSKDVRTPPSGSSQRTLDNPSLPPHVVPIILH 207

Query: 76  KQSSINFKML 86
           K+S I F +L
Sbjct: 208 KKSRIEFGIL 217

BLAST of CcUC01G009580 vs. NCBI nr
Match: KAA0037987.1 (hypothetical protein E6C27_scaffold36G001740 [Cucumis melo var. makuwa])

HSP 1 Score: 80.5 bits (197), Expect = 7.8e-12
Identity = 41/70 (58.57%), Postives = 46/70 (65.71%), Query Frame = 0

Query: 16  KHPKRHIRFSTGKPKNILDLDPPFSVGTLSKEERTTPSGPSPRTSDKPPPPLHVSSTILH 75
           KHPK HIRFS  KPK + DL PPFS+G L K+ RT P G S RT D P PP H    ILH
Sbjct: 155 KHPKNHIRFSWPKPKRVPDLAPPFSLGILLKDVRTPPFGSSQRTLDNPSPPPHAVPIILH 214

Query: 76  KQSSINFKML 86
           K+S I F +L
Sbjct: 215 KKSKIKFGIL 224

BLAST of CcUC01G009580 vs. NCBI nr
Match: KAA0040932.1 (proline-rich protein HaeIII subfamily 1-like [Cucumis melo var. makuwa] >TYK10605.1 proline-rich protein HaeIII subfamily 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 74.7 bits (182), Expect = 4.3e-10
Identity = 43/80 (53.75%), Postives = 52/80 (65.00%), Query Frame = 0

Query: 6   ITHVLSDLSIKHPKRHIRFSTGKPKNILDLDPPFSVGTLSKEERTTPSGPSPRTSDKPPP 65
           + +VL    I HPK+   FS  KPK I DL PPFS+G LSK  RT PSG S  TS+ PP 
Sbjct: 42  LENVLRGDIINHPKKVAHFSWPKPKKIPDLAPPFSLGILSKGIRTPPSGLSQGTSNNPPS 101

Query: 66  PLHVSSTILHKQSSINFKML 86
           P HV+  ILHK+S +NF +L
Sbjct: 102 P-HVAPIILHKESMVNFGIL 120

BLAST of CcUC01G009580 vs. NCBI nr
Match: XP_031744003.1 (abl interactor homolog [Cucumis sativus])

HSP 1 Score: 65.5 bits (158), Expect = 2.6e-07
Identity = 37/71 (52.11%), Postives = 44/71 (61.97%), Query Frame = 0

Query: 15  IKHPKRHIRFSTGKPKNILDLDPPFSVGTLSKEERTTPSGPSPRTSDKPPPPLHVSSTIL 74
           I HPK+HIRFS  K K I D D     G LSK+ R  P GPS R+SD  PPP    S +L
Sbjct: 41  IIHPKQHIRFSRTKSKRIPDFDTHSGFGILSKDIRIPPFGPSQRSSDSTPPP----SIVL 100

Query: 75  HKQSSINFKML 86
           HK+S +NF +L
Sbjct: 101 HKESRMNFGIL 107

BLAST of CcUC01G009580 vs. ExPASy TrEMBL
Match: A0A5D3BVE5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2454G00110 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.3e-12
Identity = 43/70 (61.43%), Postives = 48/70 (68.57%), Query Frame = 0

Query: 16  KHPKRHIRFSTGKPKNILDLDPPFSVGTLSKEERTTPSGPSPRTSDKPPPPLHVSSTILH 75
           KHPK HIRFS  KPK + DL PPFS+G LSK+ RT PSG S RT D P  P HV   ILH
Sbjct: 148 KHPKSHIRFSWPKPKRVPDLAPPFSLGILSKDVRTPPSGSSQRTLDNPSLPPHVVPIILH 207

Query: 76  KQSSINFKML 86
           K+S I F +L
Sbjct: 208 KKSRIEFGIL 217

BLAST of CcUC01G009580 vs. ExPASy TrEMBL
Match: A0A5A7T8R0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold36G001740 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 3.8e-12
Identity = 41/70 (58.57%), Postives = 46/70 (65.71%), Query Frame = 0

Query: 16  KHPKRHIRFSTGKPKNILDLDPPFSVGTLSKEERTTPSGPSPRTSDKPPPPLHVSSTILH 75
           KHPK HIRFS  KPK + DL PPFS+G L K+ RT P G S RT D P PP H    ILH
Sbjct: 155 KHPKNHIRFSWPKPKRVPDLAPPFSLGILLKDVRTPPFGSSQRTLDNPSPPPHAVPIILH 214

Query: 76  KQSSINFKML 86
           K+S I F +L
Sbjct: 215 KKSKIKFGIL 224

BLAST of CcUC01G009580 vs. ExPASy TrEMBL
Match: A0A5D3CGG1 (Proline-rich protein HaeIII subfamily 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold315G00020 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 2.1e-10
Identity = 43/80 (53.75%), Postives = 52/80 (65.00%), Query Frame = 0

Query: 6   ITHVLSDLSIKHPKRHIRFSTGKPKNILDLDPPFSVGTLSKEERTTPSGPSPRTSDKPPP 65
           + +VL    I HPK+   FS  KPK I DL PPFS+G LSK  RT PSG S  TS+ PP 
Sbjct: 42  LENVLRGDIINHPKKVAHFSWPKPKKIPDLAPPFSLGILSKGIRTPPSGLSQGTSNNPPS 101

Query: 66  PLHVSSTILHKQSSINFKML 86
           P HV+  ILHK+S +NF +L
Sbjct: 102 P-HVAPIILHKESMVNFGIL 120

BLAST of CcUC01G009580 vs. ExPASy TrEMBL
Match: A0A5D3BP86 (Proline-rich protein HaeIII subfamily 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold109G00050 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 4.0e-06
Identity = 36/72 (50.00%), Postives = 43/72 (59.72%), Query Frame = 0

Query: 14  SIKHPKRHIRFSTGKPKNILDLDPPFSVGTLSKEERTTPSGPSPRTSDKPPPPLHVSSTI 73
           SI HPK++I FS  K K   + D  F  G  SK+ R  PSGPS R+SD PP P    S I
Sbjct: 50  SIIHPKQYIHFSLTKSKGKPEFDTHFRFGIFSKDVRIPPSGPSQRSSDSPPSP----SMI 109

Query: 74  LHKQSSINFKML 86
           L K+S INF +L
Sbjct: 110 LPKESRINFGIL 117

BLAST of CcUC01G009580 vs. ExPASy TrEMBL
Match: A0A6J1HRH7 (actin cytoskeleton-regulatory complex protein PAN1-like OS=Cucurbita maxima OX=3661 GN=LOC111467141 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.7e-04
Identity = 30/54 (55.56%), Postives = 35/54 (64.81%), Query Frame = 0

Query: 32  ILDLDPPFSVGTLSKEERTTPSGPSPRTSDKPPPPLHVSSTILHKQSSINFKML 86
           IL+     ++G L +     PSGPS RTSD PPPP H SS IL+KQS INF ML
Sbjct: 273 ILNKHSKINLGMLPRGVPIPPSGPSQRTSDYPPPPPHASSVILNKQSKINFGML 326

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038882352.11.5e-1866.25uncharacterized protein LOC120073615 [Benincasa hispida][more]
KAA0038012.12.7e-1261.43hypothetical protein E6C27_scaffold36G002040 [Cucumis melo var. makuwa] >TYK0220... [more]
KAA0037987.17.8e-1258.57hypothetical protein E6C27_scaffold36G001740 [Cucumis melo var. makuwa][more]
KAA0040932.14.3e-1053.75proline-rich protein HaeIII subfamily 1-like [Cucumis melo var. makuwa] >TYK1060... [more]
XP_031744003.12.6e-0752.11abl interactor homolog [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3BVE51.3e-1261.43Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7T8R03.8e-1258.57Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3CGG12.1e-1053.75Proline-rich protein HaeIII subfamily 1-like OS=Cucumis melo var. makuwa OX=1194... [more]
A0A5D3BP864.0e-0650.00Proline-rich protein HaeIII subfamily 1-like OS=Cucumis melo var. makuwa OX=1194... [more]
A0A6J1HRH71.7e-0455.56actin cytoskeleton-regulatory complex protein PAN1-like OS=Cucurbita maxima OX=3... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 34..73

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC01G009580.1CcUC01G009580.1mRNA