Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGCCTTGTTGGGATCTATGAGAGCATGGGACACAGTGGTGTATGAGTTCAAGGAGGAGGAGATGAAGAAGGAGAAGAAGGCGTTATTCACAATCCACCAAAGAGTAGATGGCACCACGTTTGAGTTGATCGTCCATGCAAAATCTTCTGAGAATGCTTGGGAGGTCTGGAGAAAGACTTTGATGGTTTAGATAGAGTGAAGAAAATCTGCTTGCAATATTTACCCGTAGATTTTGAGGCTCTACATCAAGAAGATTCAACATCAATATGTGTTTACTTCCATTGTGTAAACTCCATTGTGTAAGAAATGAGAAGACATGACGAGAAGGTAGAAGAAGTACGAGTTGTGGAGAAGATTATGTGATTTTTACACTCAAGGTTTGACTACATTGCTGTGGAAGTTGAAGAATCTAATAAACTTGAAGAAATATTAGTAGAGGAGCTTCAAGACTCTATACAAGTCTATGAAGAAAGAGGCTTAGAGAAAGAAGAAAGAAGACGTATGGAGCAAGCACTGCAAGCCAACTCTTCCCAAAAGATGGATGGCTAG
mRNA sequence
ATGGAGGCCTTGTTGGGATCTATGAGAGCATGGGACACAGTGGTGTATGAGTTCAAGGAGGAGGAGATGAAGAAGGAGAAGAAGGCGTTATTCACAATCCACCAAAGAGTAGATGGCACCACGTTTGAGTTGATCGTCCATGCAAAATCTTCTGAGAATGCTTGGGAGATTTTGAGGCTCTACATCAAGAAGATTCAACATCAATATGTGTTTACTTCCATTGTGTTTGACTACATTGCTGTGGAAGTTGAAGAATCTAATAAACTTGAAGAAATATTAGTAGAGGAGCTTCAAGACTCTATACAAGTCTATGAAGAAAGAGGCTTAGAGAAAGAAGAAAGAAGACGTATGGAGCAAGCACTGCAAGCCAACTCTTCCCAAAAGATGGATGGCTAG
Coding sequence (CDS)
ATGGAGGCCTTGTTGGGATCTATGAGAGCATGGGACACAGTGGTGTATGAGTTCAAGGAGGAGGAGATGAAGAAGGAGAAGAAGGCGTTATTCACAATCCACCAAAGAGTAGATGGCACCACGTTTGAGTTGATCGTCCATGCAAAATCTTCTGAGAATGCTTGGGAGATTTTGAGGCTCTACATCAAGAAGATTCAACATCAATATGTGTTTACTTCCATTGTGTTTGACTACATTGCTGTGGAAGTTGAAGAATCTAATAAACTTGAAGAAATATTAGTAGAGGAGCTTCAAGACTCTATACAAGTCTATGAAGAAAGAGGCTTAGAGAAAGAAGAAAGAAGACGTATGGAGCAAGCACTGCAAGCCAACTCTTCCCAAAAGATGGATGGCTAG
Protein sequence
MEALLGSMRAWDTVVYEFKEEEMKKEKKALFTIHQRVDGTTFELIVHAKSSENAWEILRLYIKKIQHQYVFTSIVFDYIAVEVEESNKLEEILVEELQDSIQVYEERGLEKEERRRMEQALQANSSQKMDG
Homology
BLAST of Carg27890 vs. NCBI nr
Match:
KAG7023994.1 (hypothetical protein SDJN02_15022, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 247.3 bits (630), Expect = 7.4e-62
Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 0
Query: 1 MEALLGSMRAWDTVVYEFKEEEMKKEKKALFTIHQRVDGTTFELIVHAKSSENAWEILRL 60
MEALLGSMRAWDTVVYEFKEEEMKKEKKALFTIHQRVDGTTFELIVHAKSSENAWEILRL
Sbjct: 1 MEALLGSMRAWDTVVYEFKEEEMKKEKKALFTIHQRVDGTTFELIVHAKSSENAWEILRL 60
Query: 61 YIKKIQHQYVFTSIVFDYIAVEVEESNKLEEILVEELQDSIQVYEERGLEKEERRRMEQA 120
YIKKIQHQYVFTSIVFDYIAVEVEESNKLEEILVEELQDSIQVYEERGLEKEERRRMEQA
Sbjct: 61 YIKKIQHQYVFTSIVFDYIAVEVEESNKLEEILVEELQDSIQVYEERGLEKEERRRMEQA 120
Query: 121 LQANSSQKMDG 132
LQANSSQKMDG
Sbjct: 121 LQANSSQKMDG 131
BLAST of Carg27890 vs. NCBI nr
Match:
XP_042418650.1 (uncharacterized protein LOC122006990 [Zingiber officinale])
HSP 1 Score: 72.4 bits (176), Expect = 3.3e-09
Identity = 65/195 (33.33%), Postives = 88/195 (45.13%), Query Frame = 0
Query: 1 MEALLGSMRAWDTV-----VYEFKEEE-------MKKEKKALFTIHQRVDGTTFELIVHA 60
ME LLGS+ WD V + E +E K++KK LFTI+Q +D FELI A
Sbjct: 24 MEVLLGSLDVWDLVETGYTIAETSDENEQALKAMKKRKKKVLFTIYQGIDEAAFELIAVA 83
Query: 61 KSSENAWEILRL------YIKKIQHQY------------------VFTSIV--------- 120
+S+ AWEIL+ +KKI+ Q F+ ++
Sbjct: 84 TTSQEAWEILKTAYDGVDKVKKIRLQARRAQFEALQQEAPEIISDYFSRVISIVHQMRRN 143
Query: 121 --------------------FDYIAVEVEESNKLEEILVEELQDSIQVYEERGLEKEERR 131
FD+I V +EES LE + VE L S+Q YE+R L+K E R
Sbjct: 144 GEELKDVRVVEKILRSLDSKFDFIVVAIEESKDLEVMAVEVLMGSLQTYEQRILKKSEER 203
BLAST of Carg27890 vs. NCBI nr
Match:
XP_019419448.1 (PREDICTED: uncharacterized protein LOC109329946 [Lupinus angustifolius])
HSP 1 Score: 72.0 bits (175), Expect = 4.3e-09
Identity = 47/125 (37.60%), Postives = 80/125 (64.00%), Query Frame = 0
Query: 20 EEEMKKEKKALFTIHQRVDGTTFELIVHAKSSENAWEI----------LRLYIKKIQHQY 79
+E KK+ KA+F +HQ VD FE I A++S+ AW+I L+ +++K ++Q+
Sbjct: 60 KESKKKDCKAMFLLHQCVDEAHFEKISGAENSKEAWKILEACNQGVEQLKKHVEK-RYQF 119
Query: 80 VFTSIV------FDYIAVEVEESNKLEEILVEELQDSIQVYEERGLEKEERRRMEQALQA 129
+ I+ FD+I V +EES +LEE+ VE+LQ S++ +E+R +E+ R +EQALQA
Sbjct: 120 IVEKILRTLTPNFDHIVVAIEESKRLEEMKVEDLQGSLEAHEQRLMERAIERPVEQALQA 179
BLAST of Carg27890 vs. NCBI nr
Match:
KHN11212.1 (hypothetical protein glysoja_034441, partial [Glycine soja])
HSP 1 Score: 68.2 bits (165), Expect = 6.1e-08
Identity = 44/100 (44.00%), Postives = 63/100 (63.00%), Query Frame = 0
Query: 21 EEMKKEKKALFTIHQRVDGTTFELIVHAKSSENAWEILRLYIKKIQHQYVFTSI--VFDY 80
E KK+ A+ IHQ VD FE IV A +S+ AW+IL +K + + ++ FD+
Sbjct: 10 ENKKKDCNAIVLIHQCVDDAHFEKIVGAATSQEAWKIL----EKCNEEKILRTLNPKFDH 69
Query: 81 IAVEVEESNKLEEILVEELQDSIQVYEERGLEKEERRRME 119
I V +EES KLEEI VEELQ S++V+E+R +E+E + E
Sbjct: 70 IVVAIEESKKLEEITVEELQGSLEVHEQRLIEREIEKPRE 105
BLAST of Carg27890 vs. NCBI nr
Match:
XP_019462948.1 (PREDICTED: uncharacterized protein LOC109361872 [Lupinus angustifolius])
HSP 1 Score: 67.4 bits (163), Expect = 1.0e-07
Identity = 47/131 (35.88%), Postives = 74/131 (56.49%), Query Frame = 0
Query: 1 MEALLGSMRAWDTVVYEFKEEEMKKEKKALFTIHQRVDGTTFELIVHAKSSENAWEILRL 60
++ + G M D E++E K++ KA+F IHQ VD FE I A SS+ AWEIL
Sbjct: 36 LDVVKGGMPTVDENSMEYREAN-KRDCKAIFLIHQCVDRANFEKISAASSSKEAWEILEK 95
Query: 61 YI---KKIQHQYVFTSIVFDYIAVEVEESNKLEEILVEELQDSIQVYEERGLEKEERRRM 120
KKI+ FD++ +EE+ L+ + V+ELQ S++V+E+R +E++ R+
Sbjct: 96 NYSGGKKIKKILRTLHPRFDHVVAVIEEAKDLDNLSVDELQGSLEVHEQRFMERQNYRQT 155
Query: 121 EQALQANSSQK 129
+ AL A +K
Sbjct: 156 DHALSAQFKKK 165
BLAST of Carg27890 vs. ExPASy TrEMBL
Match:
A0A0B2PUL3 (Uncharacterized protein (Fragment) OS=Glycine soja OX=3848 GN=glysoja_034441 PE=4 SV=1)
HSP 1 Score: 68.2 bits (165), Expect = 3.0e-08
Identity = 44/100 (44.00%), Postives = 63/100 (63.00%), Query Frame = 0
Query: 21 EEMKKEKKALFTIHQRVDGTTFELIVHAKSSENAWEILRLYIKKIQHQYVFTSI--VFDY 80
E KK+ A+ IHQ VD FE IV A +S+ AW+IL +K + + ++ FD+
Sbjct: 10 ENKKKDCNAIVLIHQCVDDAHFEKIVGAATSQEAWKIL----EKCNEEKILRTLNPKFDH 69
Query: 81 IAVEVEESNKLEEILVEELQDSIQVYEERGLEKEERRRME 119
I V +EES KLEEI VEELQ S++V+E+R +E+E + E
Sbjct: 70 IVVAIEESKKLEEITVEELQGSLEVHEQRLIEREIEKPRE 105
BLAST of Carg27890 vs. ExPASy TrEMBL
Match:
A0A6A2XI87 (CCHC-type domain-containing protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00117010pilonHSYRG00118 PE=4 SV=1)
HSP 1 Score: 66.2 bits (160), Expect = 1.1e-07
Identity = 47/138 (34.06%), Postives = 72/138 (52.17%), Query Frame = 0
Query: 1 MEALLGSMRAWDTVVYEFKE-------------------EEMKKEKKALFTIHQRVDGTT 60
M+ALLGS WD + + E + K++KKAL+ I+Q +D
Sbjct: 25 MKALLGSQDVWDIIEKGYNEHTNDDAFATLTPDQKTTLKDSRKRDKKALYLIYQALDDDG 84
Query: 61 FELIVHAKSSENAWEILRLYIKKIQHQYVFTSIV------FDYIAVEVEESNKLEEILVE 114
FE I A SS+ AWE +L +K+ + I+ F++I V +EE+ LEE+ +E
Sbjct: 85 FEKISSASSSKEAWE--KLNGEKLGDVRIIEKILRSLDPKFEHIVVTIEETKDLEEMKIE 144
BLAST of Carg27890 vs. ExPASy TrEMBL
Match:
A0A6A3ASR7 (TMV resistance protein N-like OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110377pilonHSYRG00342 PE=4 SV=1)
HSP 1 Score: 65.5 bits (158), Expect = 1.9e-07
Identity = 47/150 (31.33%), Postives = 74/150 (49.33%), Query Frame = 0
Query: 1 MEALLGSMRAWDTVVYEFKE-------------------EEMKKEKKALFTIHQRVDGTT 60
M+AL+GS WD + + E + K++KKAL+ I+Q +D
Sbjct: 229 MKALIGSQDVWDIIEKGYNEPADDDSFATLIPDQKTTLKDSRKRDKKALYLIYQALDDDG 288
Query: 61 FELIVHAKSSENAWEILRLY------IKKIQHQYVFTSI------------VFDYIAVEV 114
FE I A SS+ AWE L+ + +KK++ Q + + F++I V +
Sbjct: 289 FEKISSASSSKEAWEKLQTFYKGSEQVKKVRLQTLRDDVRIIEKILRLFDPKFEHIVVTI 348
BLAST of Carg27890 vs. ExPASy TrEMBL
Match:
A0A392NYH4 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Trifolium medium OX=97028 GN=A2U01_0025357 PE=4 SV=1)
HSP 1 Score: 65.1 bits (157), Expect = 2.5e-07
Identity = 50/127 (39.37%), Postives = 72/127 (56.69%), Query Frame = 0
Query: 20 EEEMKKEKKALFTIHQRVDGTTFELIVHAKSSENAWEILR------LYIKKIQHQ----- 79
+E KK+ KALF +HQ +D FE I HA +++AW+IL +KK+Q Q
Sbjct: 49 KELKKKDCKALFILHQCMDAANFEKIAHATYAKDAWKILENSYEGAAKLKKVQLQTLMED 108
Query: 80 -----YVFTSIV--FDYIAVEVEESNKLEEILVEELQDSIQVYEERGLEKEERRRMEQAL 129
V S+ FDYI V +EES L + VEELQ S++ +E+R E+ RR ++ L
Sbjct: 109 QTIVEKVLRSLTQKFDYIVVAIEESKDLGCMKVEELQASLEAHEQRMNERTSDRRNDREL 168
BLAST of Carg27890 vs. ExPASy TrEMBL
Match:
A0A6I9RF49 (uncharacterized protein LOC105048038 OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105048038 PE=4 SV=1)
HSP 1 Score: 64.3 bits (155), Expect = 4.3e-07
Identity = 59/193 (30.57%), Postives = 86/193 (44.56%), Query Frame = 0
Query: 1 MEALLGSMRAWDTVVYEFKE------------EEMKKEKKALFTIHQRVDGTTFELIVHA 60
M+ALLGS WD V ++E E K++KKAL+ I+Q +D + FE I A
Sbjct: 1 MKALLGSQDLWDLVEEGYQEPREGEALTNQQRESRKRDKKALYFIYQSIDESAFEKIAVA 60
Query: 61 KSSENAWEILRLYIKKI---------------------QHQYV---FTSIV--------- 120
+S+ AWEIL+ K++ + +YV FT ++
Sbjct: 61 TTSKQAWEILQNSYKEVEKVKKVHLQTLRGEFEALQMKESEYVLDYFTRVLAVVNQLRRN 120
Query: 121 --------------------FDYIAVEVEESNKLEEILVEELQDSIQVYEERGLEKEERR 129
F+YI V +EES LEE+ ++EL S+Q +EER K R
Sbjct: 121 GKTMDDTRVIEKILRSLDVKFNYIVVAIEESKDLEEMTIDELMGSLQAHEER-FNKRRRE 180
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAG7023994.1 | 7.4e-62 | 100.00 | hypothetical protein SDJN02_15022, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
XP_042418650.1 | 3.3e-09 | 33.33 | uncharacterized protein LOC122006990 [Zingiber officinale] | [more] |
XP_019419448.1 | 4.3e-09 | 37.60 | PREDICTED: uncharacterized protein LOC109329946 [Lupinus angustifolius] | [more] |
KHN11212.1 | 6.1e-08 | 44.00 | hypothetical protein glysoja_034441, partial [Glycine soja] | [more] |
XP_019462948.1 | 1.0e-07 | 35.88 | PREDICTED: uncharacterized protein LOC109361872 [Lupinus angustifolius] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A0B2PUL3 | 3.0e-08 | 44.00 | Uncharacterized protein (Fragment) OS=Glycine soja OX=3848 GN=glysoja_034441 PE=... | [more] |
A0A6A2XI87 | 1.1e-07 | 34.06 | CCHC-type domain-containing protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig0... | [more] |
A0A6A3ASR7 | 1.9e-07 | 31.33 | TMV resistance protein N-like OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig0011037... | [more] |
A0A392NYH4 | 2.5e-07 | 39.37 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Trifol... | [more] |
A0A6I9RF49 | 4.3e-07 | 30.57 | uncharacterized protein LOC105048038 OS=Elaeis guineensis var. tenera OX=51953 G... | [more] |
Match Name | E-value | Identity | Description | |