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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. ATGGGAATTTCACAGAGGAGTGTGTCGATTGGGCAATATAATCGACGGGCTTTAGCTACTATAATCCGGAGGGTGAGGCAAAGGCTGGTGGTTTCCTCGCTGTACTGAAAGTAACAAGAGTTGAGATTAAAAAGCGAAGTGGAGGTGGATTTTGAGCGTTGAAGGGCGTCGAGGACGCAATCTCGATTGGGGTCAAGCACCTGGGCGAGCATACCGGAGTGGCTTTGACCGTGATCGGCGACGGCCAGAAGGTCCATGGAGCTGGTGATTCTCACCATCTCCTTGAAGGAGTTGGTTTGGAGAACAGCAGCGGCGTAGGCGTGAGAGAGGTCGATGGTGGTAGTTTCAGGCGAGGAGGCGGCCATGGGAGGCGGAGGAGGAGGCCCAGGGGGGGCTGTTCCGTTCTCTATCAAACCATGCTGCATCGGGGAGAATGCAGCAGCAGATTCCGGCGGAGGAAGGCACTCCAACATTTCTGTACTGTGCGCAGATCGATTCCTCCGATTAATTTGTTTTCTTTTTTTTCTTTTCTTTTGGTAGCAGGAAGAGGAAGGAGCCAGGGGACGAGGCGATCGATCAGCTCTTTTTATCTGCTCATTTCGTTGACCAATTCTTTGGCTGCCAATCATACGGT mRNA sequence ATGGGAATTTCACAGAGGAGTGTGTCGATTGGGCAATATAATCGACGGGCTTTAGCTACTATAATCCGGAGGGTGAGGCAAAGGCTGGGCGTCGAGGACGCAATCTCGATTGGGGTCAAGCACCTGGGCGAGCATACCGGAGTGGCTTTGACCGTGATCGGCGACGGCCAGAAGGTCCATGGAGCTGGTGATTCTCACCATCTCCTTGAAGGAGTTGGTTTGGAGAACAGCAGCGGCGTAGGCGTGAGAGAGGTCGATGGTGGCGAGGAGGCGGCCATGGGAGGCGGAGGAGGAGGCCCAGGGGGGGCTGTTCCGTTCTCTATCAAACCATGCTGCATCGGGGAGAATGCAGCAGCAGATTCCGGCGGAGGAAGGCACTCCAACATTTCTCAGGAAGAGGAAGGAGCCAGGGGACGAGGCGATCGATCAGCTCTTTTTATCTGCTCATTTCGTTGACCAATTCTTTGGCTGCCAATCATACGGT Coding sequence (CDS) ATGGGAATTTCACAGAGGAGTGTGTCGATTGGGCAATATAATCGACGGGCTTTAGCTACTATAATCCGGAGGGTGAGGCAAAGGCTGGGCGTCGAGGACGCAATCTCGATTGGGGTCAAGCACCTGGGCGAGCATACCGGAGTGGCTTTGACCGTGATCGGCGACGGCCAGAAGGTCCATGGAGCTGGTGATTCTCACCATCTCCTTGAAGGAGTTGGTTTGGAGAACAGCAGCGGCGTAGGCGTGAGAGAGGTCGATGGTGGCGAGGAGGCGGCCATGGGAGGCGGAGGAGGAGGCCCAGGGGGGGCTGTTCCGTTCTCTATCAAACCATGCTGCATCGGGGAGAATGCAGCAGCAGATTCCGGCGGAGGAAGGCACTCCAACATTTCTCAGGAAGAGGAAGGAGCCAGGGGACGAGGCGATCGATCAGCTCTTTTTATCTGCTCATTTCGTTGA Protein sequence MGISQRSVSIGQYNRRALATIIRRVRQRLGVEDAISIGVKHLGEHTGVALTVIGDGQKVHGAGDSHHLLEGVGLENSSGVGVREVDGGEEAAMGGGGGGPGGAVPFSIKPCCIGENAAADSGGGRHSNISQEEEGARGRGDRSALFICSFR
Homology
BLAST of Carg27805 vs. NCBI nr
Match: KAG7017877.1 (hypothetical protein SDJN02_19743, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 292.7 bits (748), Expect = 1.8e-75 Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 0 Query: 1 MGISQRSVSIGQYNRRALATIIRRVRQRLGVEDAISIGVKHLGEHTGVALTVIGDGQKVH 60 MGISQRSVSIGQYNRRALATIIRRVRQRLGVEDAISIGVKHLGEHTGVALTVIGDGQKVH Sbjct: 1 MGISQRSVSIGQYNRRALATIIRRVRQRLGVEDAISIGVKHLGEHTGVALTVIGDGQKVH 60
Query: 61 GAGDSHHLLEGVGLENSSGVGVREVDGGEEAAMGGGGGGPGGAVPFSIKPCCIGENAAAD 120 GAGDSHHLLEGVGLENSSGVGVREVDGGEEAAMGGGGGGPGGAVPFSIKPCCIGENAAAD Sbjct: 61 GAGDSHHLLEGVGLENSSGVGVREVDGGEEAAMGGGGGGPGGAVPFSIKPCCIGENAAAD 120
Query: 121 SGGGRHSNISQEEEGARGRGDRSALFICSFR 152 SGGGRHSNISQEEEGARGRGDRSALFICSFR Sbjct: 121 SGGGRHSNISQEEEGARGRGDRSALFICSFR 151
BLAST of Carg27805 vs. NCBI nr
Match: KAG7022614.1 (hypothetical protein SDJN02_16348, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 55.5 bits (132), Expect = 4.8e-04 Identity = 30/53 (56.60%), Postives = 36/53 (67.92%), Query Frame = 0 Query: 33 DAISIGVKHLGEHTGVALTVIGDGQKVHGAGDSHHLLEGVGLENSSGVGVREV 86 D ISI KHL EH + +IGD KVHGAGDS HLL G+G+E+ GV RE+ Sbjct: 109 DVISIRAKHLSEH---QVVLIGD-HKVHGAGDSRHLLVGIGMEDIDGVYAREI 157
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAG7017877.1 | 1.8e-75 | 100.00 | hypothetical protein SDJN02_19743, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
KAG7022614.1 | 4.8e-04 | 56.60 | hypothetical protein SDJN02_16348, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 117..137 |
Relationships
The following mRNA feature(s) are a part of this gene:
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