Carg27805 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg27805
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr14: 3890465 .. 3891098 (+)
RNA-Seq ExpressionCarg27805
SyntenyCarg27805
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAATTTCACAGAGGAGTGTGTCGATTGGGCAATATAATCGACGGGCTTTAGCTACTATAATCCGGAGGGTGAGGCAAAGGCTGGTGGTTTCCTCGCTGTACTGAAAGTAACAAGAGTTGAGATTAAAAAGCGAAGTGGAGGTGGATTTTGAGCGTTGAAGGGCGTCGAGGACGCAATCTCGATTGGGGTCAAGCACCTGGGCGAGCATACCGGAGTGGCTTTGACCGTGATCGGCGACGGCCAGAAGGTCCATGGAGCTGGTGATTCTCACCATCTCCTTGAAGGAGTTGGTTTGGAGAACAGCAGCGGCGTAGGCGTGAGAGAGGTCGATGGTGGTAGTTTCAGGCGAGGAGGCGGCCATGGGAGGCGGAGGAGGAGGCCCAGGGGGGGCTGTTCCGTTCTCTATCAAACCATGCTGCATCGGGGAGAATGCAGCAGCAGATTCCGGCGGAGGAAGGCACTCCAACATTTCTGTACTGTGCGCAGATCGATTCCTCCGATTAATTTGTTTTCTTTTTTTTCTTTTCTTTTGGTAGCAGGAAGAGGAAGGAGCCAGGGGACGAGGCGATCGATCAGCTCTTTTTATCTGCTCATTTCGTTGACCAATTCTTTGGCTGCCAATCATACGGT

mRNA sequence

ATGGGAATTTCACAGAGGAGTGTGTCGATTGGGCAATATAATCGACGGGCTTTAGCTACTATAATCCGGAGGGTGAGGCAAAGGCTGGGCGTCGAGGACGCAATCTCGATTGGGGTCAAGCACCTGGGCGAGCATACCGGAGTGGCTTTGACCGTGATCGGCGACGGCCAGAAGGTCCATGGAGCTGGTGATTCTCACCATCTCCTTGAAGGAGTTGGTTTGGAGAACAGCAGCGGCGTAGGCGTGAGAGAGGTCGATGGTGGCGAGGAGGCGGCCATGGGAGGCGGAGGAGGAGGCCCAGGGGGGGCTGTTCCGTTCTCTATCAAACCATGCTGCATCGGGGAGAATGCAGCAGCAGATTCCGGCGGAGGAAGGCACTCCAACATTTCTCAGGAAGAGGAAGGAGCCAGGGGACGAGGCGATCGATCAGCTCTTTTTATCTGCTCATTTCGTTGACCAATTCTTTGGCTGCCAATCATACGGT

Coding sequence (CDS)

ATGGGAATTTCACAGAGGAGTGTGTCGATTGGGCAATATAATCGACGGGCTTTAGCTACTATAATCCGGAGGGTGAGGCAAAGGCTGGGCGTCGAGGACGCAATCTCGATTGGGGTCAAGCACCTGGGCGAGCATACCGGAGTGGCTTTGACCGTGATCGGCGACGGCCAGAAGGTCCATGGAGCTGGTGATTCTCACCATCTCCTTGAAGGAGTTGGTTTGGAGAACAGCAGCGGCGTAGGCGTGAGAGAGGTCGATGGTGGCGAGGAGGCGGCCATGGGAGGCGGAGGAGGAGGCCCAGGGGGGGCTGTTCCGTTCTCTATCAAACCATGCTGCATCGGGGAGAATGCAGCAGCAGATTCCGGCGGAGGAAGGCACTCCAACATTTCTCAGGAAGAGGAAGGAGCCAGGGGACGAGGCGATCGATCAGCTCTTTTTATCTGCTCATTTCGTTGA

Protein sequence

MGISQRSVSIGQYNRRALATIIRRVRQRLGVEDAISIGVKHLGEHTGVALTVIGDGQKVHGAGDSHHLLEGVGLENSSGVGVREVDGGEEAAMGGGGGGPGGAVPFSIKPCCIGENAAADSGGGRHSNISQEEEGARGRGDRSALFICSFR
Homology
[Close]
BLAST of Carg27805 vs. NCBI nr
Match: KAG7017877.1 (hypothetical protein SDJN02_19743, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 292.7 bits (748), Expect = 1.8e-75
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 0 

Query: 1   MGISQRSVSIGQYNRRALATIIRRVRQRLGVEDAISIGVKHLGEHTGVALTVIGDGQKVH 60
           MGISQRSVSIGQYNRRALATIIRRVRQRLGVEDAISIGVKHLGEHTGVALTVIGDGQKVH
Sbjct: 1   MGISQRSVSIGQYNRRALATIIRRVRQRLGVEDAISIGVKHLGEHTGVALTVIGDGQKVH 60

Query: 61  GAGDSHHLLEGVGLENSSGVGVREVDGGEEAAMGGGGGGPGGAVPFSIKPCCIGENAAAD 120
           GAGDSHHLLEGVGLENSSGVGVREVDGGEEAAMGGGGGGPGGAVPFSIKPCCIGENAAAD
Sbjct: 61  GAGDSHHLLEGVGLENSSGVGVREVDGGEEAAMGGGGGGPGGAVPFSIKPCCIGENAAAD 120

Query: 121 SGGGRHSNISQEEEGARGRGDRSALFICSFR 152
           SGGGRHSNISQEEEGARGRGDRSALFICSFR
Sbjct: 121 SGGGRHSNISQEEEGARGRGDRSALFICSFR 151

[Close]
BLAST of Carg27805 vs. NCBI nr
Match: KAG7022614.1 (hypothetical protein SDJN02_16348, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 55.5 bits (132), Expect = 4.8e-04
Identity = 30/53 (56.60%), Postives = 36/53 (67.92%), Query Frame = 0 

Query: 33  DAISIGVKHLGEHTGVALTVIGDGQKVHGAGDSHHLLEGVGLENSSGVGVREV 86
           D ISI  KHL EH    + +IGD  KVHGAGDS HLL G+G+E+  GV  RE+
Sbjct: 109 DVISIRAKHLSEH---QVVLIGD-HKVHGAGDSRHLLVGIGMEDIDGVYAREI 157

The following BLAST results are available for this feature:
BLAST of Carg27805 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7017877.11.8e-75100.00hypothetical protein SDJN02_19743, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG7022614.14.8e-0456.60hypothetical protein SDJN02_16348, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg27805 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg27805 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg27805 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 117..137

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg27805-RACarg27805-RAmRNA