Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCAACGCAAGCATCAAGTACCATAAGGTATCCCTCTTTTCCCCTCTCTCAAATGAATATACAGTTATATACATTATTTGTTTGACTTAAATCACCCTTCTAGTGGTTTACTCAGACACAAAATGCAAGATCTATATCTATCTATTTATGTGTGTGTGTGTGTCCCTATCCATCCCTGTGCGAAACTGTTGCTTTTCCTTGTTCCCTGGACCTGGCTTGCATGTGCTGACACTTTATCGCTGGTTAATGTGATGGCAGGATGTTTGAGAAAGCCATCACTCATCATCTGAAGAAATCTAGACGAAAAAACCATGGGATGAAAACTAGCCAATTGTTTTGAATGATTGGCTACTCATGGAAGATGAAATATTGGCAATGTGAGGGTAGCTCAGAGAGTTCAGCCTCAACAGAGGCCCTCGTTGATGATTATCGCGCTATTTTATGACTGGTAAGCCTTTCGGATTCGATCTAGATTCTTTTTAGGATGTTGCAGTGTTAAAACTTCTATGTTCTGGTTCTCTTCTTTTAGCCATGTTGTTTGAAGTAGAGAAGATTTTAAACTAATTAGTGGAATCTGAACGATTAATTACTATACGATATGAACATAATACCCGATCTGGATTTTGTCAGCATTTTTCTCTGCTTGTTTGGATTTTCTTTTATCGTTTATTTTACCATTTAAAATGCTGAAAGTGCCTCACAATTTTTTGTCATTTTAACACTCACTGACATTTAATAACTAAATCATCTTTAACACCCATCCACATTTTAATAACTTCCTAAGAAAAAGCTGAACTCATTGACCTTCCCCTCAGTAACTCTACACATGGTCAAACAAAAGATTCTCACCCACCTTGAAACTCATTGATAGACTTTTGACTACTAATGGTCTCCTAGGACATTCAATAGTGCCGGTGTTCGAAGACTGAATAGACATACATTTGATCATTATCTCATTGTACATTTTATGGGCTACTTTAAATAGGGCCCAGACCCTTCCATTTTGTGAATATGTGATTGGACGACTCTGAATTTTTGCCTATGATAGAATACTGGTGGAAGAACATGCCCCTTTGTGGATGTTCGGGACATGGATTCATTAACAACCTCAGAAGGCTTAAAGAAATTGTCAAAAAAATGGAACAAGGAGGTTTTTGGATGATTTTTTTTTCCTTACATAAATTGCTCTTCTTAATCAAATGGAGGAAACTGACCCTATCACACTAGTTCAACATACCCATAAAAGAATTATGAAAGCTGATTTTATCTAGTTGGCAGTAAAGGAAGAGCAATCTTATAGACAAAAATGTAAAAAACGATGGCTTAAGGAGGGCAACATAAACTCTAGATTTTTCCATCCCATCATGGCCTCAAAGAAACAGAAAGAGTACCATCATAGAAATTCTATCGGCACAAGGTAGAAGTTAAGTCAATAAAGATGAACTTGTTTCAAAATTTGTGTCCTTGGACAATACCCTTATCGCATTTCCCCACGACTTTGATTGGAGCCCATCTGTTCAACAACAACCAGCCTCCTTTGATGTTGCTTTTACCGAAGAAGAGATGCTTCTATCGAAGAAGAAATTGGGAAGGCAATAAAGCTCTTGAGCTCTGGATCAGACAGTTTTACCTTAGAATTCTTTAAAAATTGTTGAAACATTATGAGAGTCGATATCACTAGTGTTCCAAATTTTTTTGTTAGATTGGAGTTGTCAATAGAAGCTTCAATGAAACATATATCTGTTTGATCACAAAGAAAATGGATACCCGCACTGTTGTCGAATTTCATCCCATACCCCCTTCGACCGGGCTATACAAAATTATAGCAAGGGTGCTATCATAATGTCTAAAAAAGGTTCTCCCTTTCACAAGCACTTGGCAATAGACAACATTTGTAGAGGGACGTCAGGTCCTTGATGCATCCCTCATGGCAAATGAATTTATAAACGGATGGAAAAGAAGAAAGAGAAAAGGTTTTGTCATCAAACTTGACCCAGAAAAAGCAGTTGACAAGGTCGATTGGACTCTCCTCGAAAACATTCTTGTAGCAAAAGGGTTTGACTCAAAACGGTTAGGGTGTATAAAAGGCGGCATCTCATCCACAAAATTCTCCGTCATCATTAAGGGAAGACCAATGGAGAAGATCTATGCTACTCGAGGTCTTCAACAAGGGGATCCACCATCCCTTTTTTTTCATAATGGTAATTGATTGCCTTAGTCATTTACTCACCAAGATTGAAAATAGAGGGCATATAAAGAAATCTTAGGTTGGTAATGAAGGTTACGTATCAACCCCCTTCAGTTTGCGAATGACATGATCCTCTTCTCTAATTTGTTAGATGTTTCCTCCATAAAAAACATGTTTGAGATGGTGAACACCTTCAAAAGATTCTTGGGACAAAACTTCAACGTTCAAAAAATAGAGATTATGGGTTGACGTTAGCATAGAGGATATTGAGGACTTCGCATAAATGTGGTTGTAAAATGGGTGAATGGCCGAATATGTCTATGGGATTGCCCTTAAACGGGAACCCCAAATCTTTCCCCTTTTTGAAGACCATTATTGAAAAAATAGAAAGAATATCACCATGGTCATCTTGTTACACTTCTAAAGGTAGAAGGCTCACTTAATACAAGCCACACAATCTAACTTTCCCACTTACTAATGTCTCTATTTGAAATGCCTAAGAAGAAAGTGGTTACGGAATTAGAAAAATTATTCAGAAACTATCGGTAGAAAAATGGCCTGCACCTCGTACGATGGAATACCATAAACCTCCCAGTTGAAAAGGGAGGACTCAACTTGTATTCAATTAAGAAGAGCTTTCCTTGCTAAATGGATATGGAGATATTAACACGAAGTCCCTACATTGTGGAGAAAACTTATAGAGACTAAATATACTCTCACATTATGAACACCTCGATCCCCCACGTGTATATAAAATAGCATGAAAACCTCATCACTAACTGAATTTGTCATAGGGTGGGTGATGGAGTTTTTTTGGACTGACTCGTGGATTGAAATCACCACACTTGCTATGCGGTATCCTCTTTTGTATAAACTCTCACAGTGCAAAATAACCAAGGTCAAGGAAACATGGAAAGATGAAATAAACTATGGGATCTAAAGCTCGGTAGGATCCTAAAGGATAATGAAGCTACGAAATGGATCGAATTGAGTTTTGACCTTGTGTCAATTATATTGTCTCAAGAAGTAGACTCATTGAAATGGCTTCCCTGTTAGACAGAGTCTTCTCCACACAATCTTTGATAATGAATATGGAGAGGCAATAAACCCCTTACTAGCAAAGACAATGTCACCCTGAAAAGTGAGGTTTTTCTTATGGGAAATTGTGCCTAAAGCCATGATGATATACTATTACCAAACTGGTGCCCATTATGTAGGAAAGAAACTGAATCTCAAAACCATGTATTTGTGAAGTGTACGTATAAACTTGTAATTTTTGGATGAAAAGACATCTCACTTTTCTTGGGGAGGTTAAAGAGTCGAGGGACATGAGCTTAACATACCACCCCTTCAATAATGCAAAACCTCTACTATGGACAAACCTTGTTATGACTTTCTTTTGGAATCTATAGGAAAAAGAAAAAAAGAATTCAAAAGTATTTACGATGAACACAAACTTACATTAGGCTGTTCGAAAATGTTGTTTACCACGCCATTTCTTGGTGTAAATTGTCTTGTACTTTTACTTCCTATATCATGACCCCCTCATGGTAAATTGAAAAAGTCTTTTGTAAGCATCATGGATAACATATACCTTTTGATTTCAAACATCGAAATTTATCAAAATTTTTAATGAATTGGGAAGATTAATAGATTTTTGACCAAATTGAGAAAAACCTGAAAAACTAGAATCCTTTAACTAGCCTAAAATAAAGTTGATTAAAAGCAATTTTTCTTTGATGAAACTCAGGCGGTTTAATTAAAAGGTCTATTTAAAAGTTTTTTTTTTGAAACATCTAAAGCTACATTAAATACTTAAAAGATTGTTTAAACTAAAAGTTATGCGAAACAGTTGCGATCTCATGATGTTCGTTGCACAGGCCTTGTTCTGGTAGGTCACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAATTTTAAATTTTGTTCTTGTGTTTTTATTACTAATATTTTAAATCGCTTAGTTTTGTTTCTTTGAATCAAATTGTGATAAGCTGTATAATGTGTCAGATGAGCTGGTTCTACTATTATTGTTCATAACTTGGAGATGCTAGCTCAGAACAGATTAAAAGGGCCTGCATGGAAAGAGTGCCATCCAGACTTGAGTGGCAATGATCCAGACTTCACGAATGGCTGCATGTTCATTAATGAAGTCTATGAGGTAGGATTTCAAATTCAAAGGATGCTATAAGCTTTGCATTATGAGAATGACAAATAAAATATATATACCATAATAAAAAAAAAAAAAATGGGGTGGAAGAGTTTTCACATACAAAATACACACACACACATACAATGCCTGATAAGAATTTATAGTGAGGGGGTTGCTCCTACACTCCAAGGGTCAATGTGGACTATCTGGGGCCAATCAACTACAACGATCGAGTTCAGCTTTTTTTCATTTAAAATATTACACATACTAGGCTTAGAGATGGGATTATAAACAATTCAAGTGACCTGTGGATGGTTTATTATACATTGCAGGTGCTTTGTGATCAATTGAAGTGGATGGTTTATGATGAAGTTCATGGATATGCTTTGACTTGAATCAACAACCCTTTCATGGATGATTCAAGAGGTCTCGCTTTTGTTGATGAATTCAGCTGGATAGATATGTCTTATGTGAGTCTTTACCTAGTTTATAGTACCCACACGCTTCAGTTGATGTTACCGTAATCTTTTCGTGATGTGTTCTCGTCATGACACAATGGACTTGGCAGCATCAGGCAAAGAGAGGTAAAGGTCA
mRNA sequence
ATGGGCAACGCAAGCATCAAGTACCATAAGATGCTAGCTCAGAACAGATTAAAAGGGCCTGCATGGAAAGAGTGCCATCCAGACTTGAGTGGCAATGATCCAGACTTCACGAATGGCTGCATGTTCATTAATGAAGTCTATGAGGTGCTTTGTGATCAATTGAAGTGGATGGTTTATGATGAAGTTCATGGATATGCTTTGACTTGAATCAACAACCCTTTCATGGATGATTCAAGAGGTCTCGCTTTTGTTGATGAATTCAGCTGGATAGATATGTCTTATGTGAGTCTTTACCTAGTTTATAGTACCCACACGCTTCAGTTGATGTTACCGTAATCTTTTCGTGATGTGTTCTCGTCATGACACAATGGACTTGGCAGCATCAGGCAAAGAGAGGTAAAGGTCA
Coding sequence (CDS)
ATGGGCAACGCAAGCATCAAGTACCATAAGATGCTAGCTCAGAACAGATTAAAAGGGCCTGCATGGAAAGAGTGCCATCCAGACTTGAGTGGCAATGATCCAGACTTCACGAATGGCTGCATGTTCATTAATGAAGTCTATGAGGTGCTTTGTGATCAATTGAAGTGGATGGTTTATGATGAAGTTCATGGATATGCTTTGACTTGA
Protein sequence
MGNASIKYHKMLAQNRLKGPAWKECHPDLSGNDPDFTNGCMFINEVYEVLCDQLKWMVYDEVHGYALT
Homology
BLAST of Carg27142 vs. NCBI nr
Match:
KAG7011458.1 (hypothetical protein SDJN02_26364, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 156.0 bits (393), Expect = 1.2e-34
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0
Query: 1 MGNASIKYHKMLAQNRLKGPAWKECHPDLSGNDPDFTNGCMFINEVYEVLCDQLKWMVYD 60
MGNASIKYHKMLAQNRLKGPAWKECHPDLSGNDPDFTNGCMFINEVYEVLCDQLKWMVYD
Sbjct: 1 MGNASIKYHKMLAQNRLKGPAWKECHPDLSGNDPDFTNGCMFINEVYEVLCDQLKWMVYD 60
Query: 61 EVHGYALT 69
EVHGYALT
Sbjct: 61 EVHGYALT 68
BLAST of Carg27142 vs. NCBI nr
Match:
XP_023553700.1 (chaperone protein dnaJ C76, chloroplastic [Cucurbita pepo subsp. pepo] >XP_023553701.1 chaperone protein dnaJ C76, chloroplastic [Cucurbita pepo subsp. pepo])
HSP 1 Score: 85.9 bits (211), Expect = 1.5e-13
Identity = 37/46 (80.43%), Postives = 41/46 (89.13%), Query Frame = 0
Query: 23 KECHPDLSGNDPDFTNGCMFINEVYEVLCDQLKWMVYDEVHGYALT 69
KECHPDLSG+DPD TN CMFINEVYEVL D ++ MVYDE+HGYALT
Sbjct: 90 KECHPDLSGDDPDTTNFCMFINEVYEVLSDPVQRMVYDEIHGYALT 135
BLAST of Carg27142 vs. NCBI nr
Match:
KAG6589243.1 (Chaperone protein dnaJ C76, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7022942.1 Chaperone protein dnaJ C76, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 85.9 bits (211), Expect = 1.5e-13
Identity = 37/46 (80.43%), Postives = 41/46 (89.13%), Query Frame = 0
Query: 23 KECHPDLSGNDPDFTNGCMFINEVYEVLCDQLKWMVYDEVHGYALT 69
KECHPDLSG+DPD TN CMFINEVYEVL D ++ MVYDE+HGYALT
Sbjct: 89 KECHPDLSGDDPDTTNFCMFINEVYEVLSDPVQRMVYDEIHGYALT 134
BLAST of Carg27142 vs. NCBI nr
Match:
XP_022952127.1 (chaperone protein dnaJ C76, chloroplastic [Cucurbita moschata] >XP_022952128.1 chaperone protein dnaJ C76, chloroplastic [Cucurbita moschata])
HSP 1 Score: 85.9 bits (211), Expect = 1.5e-13
Identity = 37/46 (80.43%), Postives = 41/46 (89.13%), Query Frame = 0
Query: 23 KECHPDLSGNDPDFTNGCMFINEVYEVLCDQLKWMVYDEVHGYALT 69
KECHPDLSG+DPD TN CMFINEVYEVL D ++ MVYDE+HGYALT
Sbjct: 90 KECHPDLSGDDPDTTNFCMFINEVYEVLSDPVQRMVYDEIHGYALT 135
BLAST of Carg27142 vs. NCBI nr
Match:
XP_023530003.1 (chaperone protein dnaJ C76, chloroplastic-like [Cucurbita pepo subsp. pepo])
HSP 1 Score: 85.9 bits (211), Expect = 1.5e-13
Identity = 37/46 (80.43%), Postives = 41/46 (89.13%), Query Frame = 0
Query: 23 KECHPDLSGNDPDFTNGCMFINEVYEVLCDQLKWMVYDEVHGYALT 69
KECHPDLSG+DPD TN CMFINEVYEVL D ++ MVYDE+HGYALT
Sbjct: 89 KECHPDLSGDDPDTTNFCMFINEVYEVLSDPVQRMVYDEIHGYALT 134
BLAST of Carg27142 vs. ExPASy TrEMBL
Match:
A0A6J1HVL1 (chaperone protein dnaJ C76, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111468246 PE=4 SV=1)
HSP 1 Score: 85.9 bits (211), Expect = 7.2e-14
Identity = 37/46 (80.43%), Postives = 41/46 (89.13%), Query Frame = 0
Query: 23 KECHPDLSGNDPDFTNGCMFINEVYEVLCDQLKWMVYDEVHGYALT 69
KECHPDLSG+DPD TN CMFINEVYEVL D ++ MVYDE+HGYALT
Sbjct: 90 KECHPDLSGDDPDTTNFCMFINEVYEVLSDPVQRMVYDEIHGYALT 135
BLAST of Carg27142 vs. ExPASy TrEMBL
Match:
A0A6J1GJL9 (chaperone protein dnaJ C76, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111454894 PE=4 SV=1)
HSP 1 Score: 85.9 bits (211), Expect = 7.2e-14
Identity = 37/46 (80.43%), Postives = 41/46 (89.13%), Query Frame = 0
Query: 23 KECHPDLSGNDPDFTNGCMFINEVYEVLCDQLKWMVYDEVHGYALT 69
KECHPDLSG+DPD TN CMFINEVYEVL D ++ MVYDE+HGYALT
Sbjct: 90 KECHPDLSGDDPDTTNFCMFINEVYEVLSDPVQRMVYDEIHGYALT 135
BLAST of Carg27142 vs. ExPASy TrEMBL
Match:
A0A6J1JIE3 (chaperone protein dnaJ C76, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111486073 PE=4 SV=1)
HSP 1 Score: 85.9 bits (211), Expect = 7.2e-14
Identity = 37/46 (80.43%), Postives = 41/46 (89.13%), Query Frame = 0
Query: 23 KECHPDLSGNDPDFTNGCMFINEVYEVLCDQLKWMVYDEVHGYALT 69
KECHPDLSG+DPD TN CMFINEVYEVL D ++ MVYDE+HGYALT
Sbjct: 86 KECHPDLSGDDPDTTNFCMFINEVYEVLSDPVQRMVYDEIHGYALT 131
BLAST of Carg27142 vs. ExPASy TrEMBL
Match:
A0A6J1EWA9 (chaperone protein dnaJ C76, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111437142 PE=4 SV=1)
HSP 1 Score: 85.9 bits (211), Expect = 7.2e-14
Identity = 37/46 (80.43%), Postives = 41/46 (89.13%), Query Frame = 0
Query: 23 KECHPDLSGNDPDFTNGCMFINEVYEVLCDQLKWMVYDEVHGYALT 69
KECHPDLSG+DPD TN CMFINEVYEVL D ++ MVYDE+HGYALT
Sbjct: 89 KECHPDLSGDDPDTTNFCMFINEVYEVLSDPVQRMVYDEIHGYALT 134
BLAST of Carg27142 vs. ExPASy TrEMBL
Match:
B9SW34 (Expressed protein, putative OS=Ricinus communis OX=3988 GN=RCOM_0323920 PE=4 SV=1)
HSP 1 Score: 85.5 bits (210), Expect = 9.4e-14
Identity = 37/46 (80.43%), Postives = 40/46 (86.96%), Query Frame = 0
Query: 23 KECHPDLSGNDPDFTNGCMFINEVYEVLCDQLKWMVYDEVHGYALT 69
KECHPDLSGNDPD TN CMFINEVY VL D ++ MVYDE+HGYALT
Sbjct: 90 KECHPDLSGNDPDTTNFCMFINEVYAVLSDPVQRMVYDEIHGYALT 135
BLAST of Carg27142 vs. TAIR 10
Match:
AT2G42750.1 (DNAJ heat shock N-terminal domain-containing protein )
HSP 1 Score: 79.7 bits (195), Expect = 9.9e-16
Identity = 31/46 (67.39%), Postives = 39/46 (84.78%), Query Frame = 0
Query: 23 KECHPDLSGNDPDFTNGCMFINEVYEVLCDQLKWMVYDEVHGYALT 69
K CHPDLSGNDP+ TN CMFIN++YE+L D ++ MVYDE+HGY +T
Sbjct: 101 KSCHPDLSGNDPETTNFCMFINDIYEILSDPVQRMVYDEIHGYTVT 146
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAG7011458.1 | 1.2e-34 | 100.00 | hypothetical protein SDJN02_26364, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
XP_023553700.1 | 1.5e-13 | 80.43 | chaperone protein dnaJ C76, chloroplastic [Cucurbita pepo subsp. pepo] >XP_02355... | [more] |
KAG6589243.1 | 1.5e-13 | 80.43 | Chaperone protein dnaJ C76, chloroplastic, partial [Cucurbita argyrosperma subsp... | [more] |
XP_022952127.1 | 1.5e-13 | 80.43 | chaperone protein dnaJ C76, chloroplastic [Cucurbita moschata] >XP_022952128.1 c... | [more] |
XP_023530003.1 | 1.5e-13 | 80.43 | chaperone protein dnaJ C76, chloroplastic-like [Cucurbita pepo subsp. pepo] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1HVL1 | 7.2e-14 | 80.43 | chaperone protein dnaJ C76, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC1114... | [more] |
A0A6J1GJL9 | 7.2e-14 | 80.43 | chaperone protein dnaJ C76, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC11... | [more] |
A0A6J1JIE3 | 7.2e-14 | 80.43 | chaperone protein dnaJ C76, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LO... | [more] |
A0A6J1EWA9 | 7.2e-14 | 80.43 | chaperone protein dnaJ C76, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=... | [more] |
B9SW34 | 9.4e-14 | 80.43 | Expressed protein, putative OS=Ricinus communis OX=3988 GN=RCOM_0323920 PE=4 SV=... | [more] |
Match Name | E-value | Identity | Description | |
AT2G42750.1 | 9.9e-16 | 67.39 | DNAJ heat shock N-terminal domain-containing protein | [more] |