Carg27142 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg27142
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionchaperone protein dnaJ C76, chloroplastic-like
LocationCarg_Chr19: 3020612 .. 3025565 (-)
RNA-Seq ExpressionCarg27142
SyntenyCarg27142
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCAACGCAAGCATCAAGTACCATAAGGTATCCCTCTTTTCCCCTCTCTCAAATGAATATACAGTTATATACATTATTTGTTTGACTTAAATCACCCTTCTAGTGGTTTACTCAGACACAAAATGCAAGATCTATATCTATCTATTTATGTGTGTGTGTGTGTCCCTATCCATCCCTGTGCGAAACTGTTGCTTTTCCTTGTTCCCTGGACCTGGCTTGCATGTGCTGACACTTTATCGCTGGTTAATGTGATGGCAGGATGTTTGAGAAAGCCATCACTCATCATCTGAAGAAATCTAGACGAAAAAACCATGGGATGAAAACTAGCCAATTGTTTTGAATGATTGGCTACTCATGGAAGATGAAATATTGGCAATGTGAGGGTAGCTCAGAGAGTTCAGCCTCAACAGAGGCCCTCGTTGATGATTATCGCGCTATTTTATGACTGGTAAGCCTTTCGGATTCGATCTAGATTCTTTTTAGGATGTTGCAGTGTTAAAACTTCTATGTTCTGGTTCTCTTCTTTTAGCCATGTTGTTTGAAGTAGAGAAGATTTTAAACTAATTAGTGGAATCTGAACGATTAATTACTATACGATATGAACATAATACCCGATCTGGATTTTGTCAGCATTTTTCTCTGCTTGTTTGGATTTTCTTTTATCGTTTATTTTACCATTTAAAATGCTGAAAGTGCCTCACAATTTTTTGTCATTTTAACACTCACTGACATTTAATAACTAAATCATCTTTAACACCCATCCACATTTTAATAACTTCCTAAGAAAAAGCTGAACTCATTGACCTTCCCCTCAGTAACTCTACACATGGTCAAACAAAAGATTCTCACCCACCTTGAAACTCATTGATAGACTTTTGACTACTAATGGTCTCCTAGGACATTCAATAGTGCCGGTGTTCGAAGACTGAATAGACATACATTTGATCATTATCTCATTGTACATTTTATGGGCTACTTTAAATAGGGCCCAGACCCTTCCATTTTGTGAATATGTGATTGGACGACTCTGAATTTTTGCCTATGATAGAATACTGGTGGAAGAACATGCCCCTTTGTGGATGTTCGGGACATGGATTCATTAACAACCTCAGAAGGCTTAAAGAAATTGTCAAAAAAATGGAACAAGGAGGTTTTTGGATGATTTTTTTTTCCTTACATAAATTGCTCTTCTTAATCAAATGGAGGAAACTGACCCTATCACACTAGTTCAACATACCCATAAAAGAATTATGAAAGCTGATTTTATCTAGTTGGCAGTAAAGGAAGAGCAATCTTATAGACAAAAATGTAAAAAACGATGGCTTAAGGAGGGCAACATAAACTCTAGATTTTTCCATCCCATCATGGCCTCAAAGAAACAGAAAGAGTACCATCATAGAAATTCTATCGGCACAAGGTAGAAGTTAAGTCAATAAAGATGAACTTGTTTCAAAATTTGTGTCCTTGGACAATACCCTTATCGCATTTCCCCACGACTTTGATTGGAGCCCATCTGTTCAACAACAACCAGCCTCCTTTGATGTTGCTTTTACCGAAGAAGAGATGCTTCTATCGAAGAAGAAATTGGGAAGGCAATAAAGCTCTTGAGCTCTGGATCAGACAGTTTTACCTTAGAATTCTTTAAAAATTGTTGAAACATTATGAGAGTCGATATCACTAGTGTTCCAAATTTTTTTGTTAGATTGGAGTTGTCAATAGAAGCTTCAATGAAACATATATCTGTTTGATCACAAAGAAAATGGATACCCGCACTGTTGTCGAATTTCATCCCATACCCCCTTCGACCGGGCTATACAAAATTATAGCAAGGGTGCTATCATAATGTCTAAAAAAGGTTCTCCCTTTCACAAGCACTTGGCAATAGACAACATTTGTAGAGGGACGTCAGGTCCTTGATGCATCCCTCATGGCAAATGAATTTATAAACGGATGGAAAAGAAGAAAGAGAAAAGGTTTTGTCATCAAACTTGACCCAGAAAAAGCAGTTGACAAGGTCGATTGGACTCTCCTCGAAAACATTCTTGTAGCAAAAGGGTTTGACTCAAAACGGTTAGGGTGTATAAAAGGCGGCATCTCATCCACAAAATTCTCCGTCATCATTAAGGGAAGACCAATGGAGAAGATCTATGCTACTCGAGGTCTTCAACAAGGGGATCCACCATCCCTTTTTTTTCATAATGGTAATTGATTGCCTTAGTCATTTACTCACCAAGATTGAAAATAGAGGGCATATAAAGAAATCTTAGGTTGGTAATGAAGGTTACGTATCAACCCCCTTCAGTTTGCGAATGACATGATCCTCTTCTCTAATTTGTTAGATGTTTCCTCCATAAAAAACATGTTTGAGATGGTGAACACCTTCAAAAGATTCTTGGGACAAAACTTCAACGTTCAAAAAATAGAGATTATGGGTTGACGTTAGCATAGAGGATATTGAGGACTTCGCATAAATGTGGTTGTAAAATGGGTGAATGGCCGAATATGTCTATGGGATTGCCCTTAAACGGGAACCCCAAATCTTTCCCCTTTTTGAAGACCATTATTGAAAAAATAGAAAGAATATCACCATGGTCATCTTGTTACACTTCTAAAGGTAGAAGGCTCACTTAATACAAGCCACACAATCTAACTTTCCCACTTACTAATGTCTCTATTTGAAATGCCTAAGAAGAAAGTGGTTACGGAATTAGAAAAATTATTCAGAAACTATCGGTAGAAAAATGGCCTGCACCTCGTACGATGGAATACCATAAACCTCCCAGTTGAAAAGGGAGGACTCAACTTGTATTCAATTAAGAAGAGCTTTCCTTGCTAAATGGATATGGAGATATTAACACGAAGTCCCTACATTGTGGAGAAAACTTATAGAGACTAAATATACTCTCACATTATGAACACCTCGATCCCCCACGTGTATATAAAATAGCATGAAAACCTCATCACTAACTGAATTTGTCATAGGGTGGGTGATGGAGTTTTTTTGGACTGACTCGTGGATTGAAATCACCACACTTGCTATGCGGTATCCTCTTTTGTATAAACTCTCACAGTGCAAAATAACCAAGGTCAAGGAAACATGGAAAGATGAAATAAACTATGGGATCTAAAGCTCGGTAGGATCCTAAAGGATAATGAAGCTACGAAATGGATCGAATTGAGTTTTGACCTTGTGTCAATTATATTGTCTCAAGAAGTAGACTCATTGAAATGGCTTCCCTGTTAGACAGAGTCTTCTCCACACAATCTTTGATAATGAATATGGAGAGGCAATAAACCCCTTACTAGCAAAGACAATGTCACCCTGAAAAGTGAGGTTTTTCTTATGGGAAATTGTGCCTAAAGCCATGATGATATACTATTACCAAACTGGTGCCCATTATGTAGGAAAGAAACTGAATCTCAAAACCATGTATTTGTGAAGTGTACGTATAAACTTGTAATTTTTGGATGAAAAGACATCTCACTTTTCTTGGGGAGGTTAAAGAGTCGAGGGACATGAGCTTAACATACCACCCCTTCAATAATGCAAAACCTCTACTATGGACAAACCTTGTTATGACTTTCTTTTGGAATCTATAGGAAAAAGAAAAAAAGAATTCAAAAGTATTTACGATGAACACAAACTTACATTAGGCTGTTCGAAAATGTTGTTTACCACGCCATTTCTTGGTGTAAATTGTCTTGTACTTTTACTTCCTATATCATGACCCCCTCATGGTAAATTGAAAAAGTCTTTTGTAAGCATCATGGATAACATATACCTTTTGATTTCAAACATCGAAATTTATCAAAATTTTTAATGAATTGGGAAGATTAATAGATTTTTGACCAAATTGAGAAAAACCTGAAAAACTAGAATCCTTTAACTAGCCTAAAATAAAGTTGATTAAAAGCAATTTTTCTTTGATGAAACTCAGGCGGTTTAATTAAAAGGTCTATTTAAAAGTTTTTTTTTTGAAACATCTAAAGCTACATTAAATACTTAAAAGATTGTTTAAACTAAAAGTTATGCGAAACAGTTGCGATCTCATGATGTTCGTTGCACAGGCCTTGTTCTGGTAGGTCACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAATTTTAAATTTTGTTCTTGTGTTTTTATTACTAATATTTTAAATCGCTTAGTTTTGTTTCTTTGAATCAAATTGTGATAAGCTGTATAATGTGTCAGATGAGCTGGTTCTACTATTATTGTTCATAACTTGGAGATGCTAGCTCAGAACAGATTAAAAGGGCCTGCATGGAAAGAGTGCCATCCAGACTTGAGTGGCAATGATCCAGACTTCACGAATGGCTGCATGTTCATTAATGAAGTCTATGAGGTAGGATTTCAAATTCAAAGGATGCTATAAGCTTTGCATTATGAGAATGACAAATAAAATATATATACCATAATAAAAAAAAAAAAAATGGGGTGGAAGAGTTTTCACATACAAAATACACACACACACATACAATGCCTGATAAGAATTTATAGTGAGGGGGTTGCTCCTACACTCCAAGGGTCAATGTGGACTATCTGGGGCCAATCAACTACAACGATCGAGTTCAGCTTTTTTTCATTTAAAATATTACACATACTAGGCTTAGAGATGGGATTATAAACAATTCAAGTGACCTGTGGATGGTTTATTATACATTGCAGGTGCTTTGTGATCAATTGAAGTGGATGGTTTATGATGAAGTTCATGGATATGCTTTGACTTGAATCAACAACCCTTTCATGGATGATTCAAGAGGTCTCGCTTTTGTTGATGAATTCAGCTGGATAGATATGTCTTATGTGAGTCTTTACCTAGTTTATAGTACCCACACGCTTCAGTTGATGTTACCGTAATCTTTTCGTGATGTGTTCTCGTCATGACACAATGGACTTGGCAGCATCAGGCAAAGAGAGGTAAAGGTCA

mRNA sequence

ATGGGCAACGCAAGCATCAAGTACCATAAGATGCTAGCTCAGAACAGATTAAAAGGGCCTGCATGGAAAGAGTGCCATCCAGACTTGAGTGGCAATGATCCAGACTTCACGAATGGCTGCATGTTCATTAATGAAGTCTATGAGGTGCTTTGTGATCAATTGAAGTGGATGGTTTATGATGAAGTTCATGGATATGCTTTGACTTGAATCAACAACCCTTTCATGGATGATTCAAGAGGTCTCGCTTTTGTTGATGAATTCAGCTGGATAGATATGTCTTATGTGAGTCTTTACCTAGTTTATAGTACCCACACGCTTCAGTTGATGTTACCGTAATCTTTTCGTGATGTGTTCTCGTCATGACACAATGGACTTGGCAGCATCAGGCAAAGAGAGGTAAAGGTCA

Coding sequence (CDS)

ATGGGCAACGCAAGCATCAAGTACCATAAGATGCTAGCTCAGAACAGATTAAAAGGGCCTGCATGGAAAGAGTGCCATCCAGACTTGAGTGGCAATGATCCAGACTTCACGAATGGCTGCATGTTCATTAATGAAGTCTATGAGGTGCTTTGTGATCAATTGAAGTGGATGGTTTATGATGAAGTTCATGGATATGCTTTGACTTGA

Protein sequence

MGNASIKYHKMLAQNRLKGPAWKECHPDLSGNDPDFTNGCMFINEVYEVLCDQLKWMVYDEVHGYALT
Homology
[Close]
BLAST of Carg27142 vs. NCBI nr
Match: KAG7011458.1 (hypothetical protein SDJN02_26364, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 156.0 bits (393), Expect = 1.2e-34
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0 

Query: 1  MGNASIKYHKMLAQNRLKGPAWKECHPDLSGNDPDFTNGCMFINEVYEVLCDQLKWMVYD 60
          MGNASIKYHKMLAQNRLKGPAWKECHPDLSGNDPDFTNGCMFINEVYEVLCDQLKWMVYD
Sbjct: 1  MGNASIKYHKMLAQNRLKGPAWKECHPDLSGNDPDFTNGCMFINEVYEVLCDQLKWMVYD 60

Query: 61 EVHGYALT 69
          EVHGYALT
Sbjct: 61 EVHGYALT 68

[Close]
BLAST of Carg27142 vs. NCBI nr
Match: XP_023553700.1 (chaperone protein dnaJ C76, chloroplastic [Cucurbita pepo subsp. pepo] >XP_023553701.1 chaperone protein dnaJ C76, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 85.9 bits (211), Expect = 1.5e-13
Identity = 37/46 (80.43%), Postives = 41/46 (89.13%), Query Frame = 0 

Query: 23  KECHPDLSGNDPDFTNGCMFINEVYEVLCDQLKWMVYDEVHGYALT 69
           KECHPDLSG+DPD TN CMFINEVYEVL D ++ MVYDE+HGYALT
Sbjct: 90  KECHPDLSGDDPDTTNFCMFINEVYEVLSDPVQRMVYDEIHGYALT 135

[Close]
BLAST of Carg27142 vs. NCBI nr
Match: KAG6589243.1 (Chaperone protein dnaJ C76, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7022942.1 Chaperone protein dnaJ C76, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 85.9 bits (211), Expect = 1.5e-13
Identity = 37/46 (80.43%), Postives = 41/46 (89.13%), Query Frame = 0 

Query: 23  KECHPDLSGNDPDFTNGCMFINEVYEVLCDQLKWMVYDEVHGYALT 69
           KECHPDLSG+DPD TN CMFINEVYEVL D ++ MVYDE+HGYALT
Sbjct: 89  KECHPDLSGDDPDTTNFCMFINEVYEVLSDPVQRMVYDEIHGYALT 134

[Close]
BLAST of Carg27142 vs. NCBI nr
Match: XP_022952127.1 (chaperone protein dnaJ C76, chloroplastic [Cucurbita moschata] >XP_022952128.1 chaperone protein dnaJ C76, chloroplastic [Cucurbita moschata])

HSP 1 Score: 85.9 bits (211), Expect = 1.5e-13
Identity = 37/46 (80.43%), Postives = 41/46 (89.13%), Query Frame = 0 

Query: 23  KECHPDLSGNDPDFTNGCMFINEVYEVLCDQLKWMVYDEVHGYALT 69
           KECHPDLSG+DPD TN CMFINEVYEVL D ++ MVYDE+HGYALT
Sbjct: 90  KECHPDLSGDDPDTTNFCMFINEVYEVLSDPVQRMVYDEIHGYALT 135

[Close]
BLAST of Carg27142 vs. NCBI nr
Match: XP_023530003.1 (chaperone protein dnaJ C76, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 85.9 bits (211), Expect = 1.5e-13
Identity = 37/46 (80.43%), Postives = 41/46 (89.13%), Query Frame = 0 

Query: 23  KECHPDLSGNDPDFTNGCMFINEVYEVLCDQLKWMVYDEVHGYALT 69
           KECHPDLSG+DPD TN CMFINEVYEVL D ++ MVYDE+HGYALT
Sbjct: 89  KECHPDLSGDDPDTTNFCMFINEVYEVLSDPVQRMVYDEIHGYALT 134

[Close]
BLAST of Carg27142 vs. ExPASy TrEMBL
Match: A0A6J1HVL1 (chaperone protein dnaJ C76, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111468246 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 7.2e-14
Identity = 37/46 (80.43%), Postives = 41/46 (89.13%), Query Frame = 0 

Query: 23  KECHPDLSGNDPDFTNGCMFINEVYEVLCDQLKWMVYDEVHGYALT 69
           KECHPDLSG+DPD TN CMFINEVYEVL D ++ MVYDE+HGYALT
Sbjct: 90  KECHPDLSGDDPDTTNFCMFINEVYEVLSDPVQRMVYDEIHGYALT 135

[Close]
BLAST of Carg27142 vs. ExPASy TrEMBL
Match: A0A6J1GJL9 (chaperone protein dnaJ C76, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111454894 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 7.2e-14
Identity = 37/46 (80.43%), Postives = 41/46 (89.13%), Query Frame = 0 

Query: 23  KECHPDLSGNDPDFTNGCMFINEVYEVLCDQLKWMVYDEVHGYALT 69
           KECHPDLSG+DPD TN CMFINEVYEVL D ++ MVYDE+HGYALT
Sbjct: 90  KECHPDLSGDDPDTTNFCMFINEVYEVLSDPVQRMVYDEIHGYALT 135

[Close]
BLAST of Carg27142 vs. ExPASy TrEMBL
Match: A0A6J1JIE3 (chaperone protein dnaJ C76, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111486073 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 7.2e-14
Identity = 37/46 (80.43%), Postives = 41/46 (89.13%), Query Frame = 0 

Query: 23  KECHPDLSGNDPDFTNGCMFINEVYEVLCDQLKWMVYDEVHGYALT 69
           KECHPDLSG+DPD TN CMFINEVYEVL D ++ MVYDE+HGYALT
Sbjct: 86  KECHPDLSGDDPDTTNFCMFINEVYEVLSDPVQRMVYDEIHGYALT 131

[Close]
BLAST of Carg27142 vs. ExPASy TrEMBL
Match: A0A6J1EWA9 (chaperone protein dnaJ C76, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111437142 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 7.2e-14
Identity = 37/46 (80.43%), Postives = 41/46 (89.13%), Query Frame = 0 

Query: 23  KECHPDLSGNDPDFTNGCMFINEVYEVLCDQLKWMVYDEVHGYALT 69
           KECHPDLSG+DPD TN CMFINEVYEVL D ++ MVYDE+HGYALT
Sbjct: 89  KECHPDLSGDDPDTTNFCMFINEVYEVLSDPVQRMVYDEIHGYALT 134

[Close]
BLAST of Carg27142 vs. ExPASy TrEMBL
Match: B9SW34 (Expressed protein, putative OS=Ricinus communis OX=3988 GN=RCOM_0323920 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 9.4e-14
Identity = 37/46 (80.43%), Postives = 40/46 (86.96%), Query Frame = 0 

Query: 23  KECHPDLSGNDPDFTNGCMFINEVYEVLCDQLKWMVYDEVHGYALT 69
           KECHPDLSGNDPD TN CMFINEVY VL D ++ MVYDE+HGYALT
Sbjct: 90  KECHPDLSGNDPDTTNFCMFINEVYAVLSDPVQRMVYDEIHGYALT 135

[Close]
BLAST of Carg27142 vs. TAIR 10
Match: AT2G42750.1 (DNAJ heat shock N-terminal domain-containing protein )

HSP 1 Score: 79.7 bits (195), Expect = 9.9e-16
Identity = 31/46 (67.39%), Postives = 39/46 (84.78%), Query Frame = 0 

Query: 23  KECHPDLSGNDPDFTNGCMFINEVYEVLCDQLKWMVYDEVHGYALT 69
           K CHPDLSGNDP+ TN CMFIN++YE+L D ++ MVYDE+HGY +T
Sbjct: 101 KSCHPDLSGNDPETTNFCMFINDIYEILSDPVQRMVYDEIHGYTVT 146

The following BLAST results are available for this feature:
BLAST of Carg27142 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7011458.11.2e-34100.00hypothetical protein SDJN02_26364, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_023553700.11.5e-1380.43chaperone protein dnaJ C76, chloroplastic [Cucurbita pepo subsp. pepo] >XP_02355... [more]
KAG6589243.11.5e-1380.43Chaperone protein dnaJ C76, chloroplastic, partial [Cucurbita argyrosperma subsp... [more]
XP_022952127.11.5e-1380.43chaperone protein dnaJ C76, chloroplastic [Cucurbita moschata] >XP_022952128.1 c... [more]
XP_023530003.11.5e-1380.43chaperone protein dnaJ C76, chloroplastic-like [Cucurbita pepo subsp. pepo][more]
BLAST of Carg27142 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg27142 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1HVL17.2e-1480.43chaperone protein dnaJ C76, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC1114... [more]
A0A6J1GJL97.2e-1480.43chaperone protein dnaJ C76, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC11... [more]
A0A6J1JIE37.2e-1480.43chaperone protein dnaJ C76, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LO... [more]
A0A6J1EWA97.2e-1480.43chaperone protein dnaJ C76, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=... [more]
B9SW349.4e-1480.43Expressed protein, putative OS=Ricinus communis OX=3988 GN=RCOM_0323920 PE=4 SV=... [more]
BLAST of Carg27142 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G42750.19.9e-1667.39DNAJ heat shock N-terminal domain-containing protein [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR44579OS01G0730500 PROTEINcoord: 22..68
NoneNo IPR availablePANTHERPTHR44579:SF6DNAJ HEAT SHOCK AMINO-TERMINAL DOMAIN PROTEINcoord: 22..68
IPR036869Chaperone J-domain superfamilySUPERFAMILY46565Chaperone J-domaincoord: 22..62

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg27142-RACarg27142-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0022900 electron transport chain
molecular_function GO:0009055 electron transfer activity
molecular_function GO:0005506 iron ion binding
molecular_function GO:0051536 iron-sulfur cluster binding