Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGACGTAACTTTATATGGGCCTAAATGGTTAAAGCCCAAACAGATCGACCTCTATCTGGGCCTAAACTGGTGGAAGCCCAAAATTGAAAGAACCTCTCTCTTTCTTCTCTCCCTCCTCCCGGTGTCAATCGGTGGAGGAATTTCCTGAGAAATTGAAATGGAGAAATCCTTCACTCTGATTCAGACAATTGCGACCGCTGGAGCCTTCTCTGCGATTTCGTTCTGGTGCGATTTTACTTCTCTCTCTTCAACCTTGATGCCTCATTTCTTCTCTGGATCTCTTAGCTCAATTCGTCTTGCTTCATTTTTCTTAGGTATGGATTCATGTTTGGAAGAGAGTCCGCTCGAAAAGACTTGGGAGATTTGATTCAAGATCTACGCCGCGGAAGCTCCAACGATTCTTCTTCTGCAACTCCTCAGTAGGTAATGGTTTTTATACGATGATGTAATTGACGTTCGAGAACTATTAATCGCCTGCTTGTTACTGATCGATTCGATTGTGTTGGAGAAGTTCATTCTGGACTGAATGACAAAATTTAACTTATCGAACAAGGAGATTCGTAATTTTTGATTTGAGGCGTTTGTGAAATGTGGATTAACCTTAAAGCAACGTCGATTTTGAGGCATTTGAAAGAAAAACGTGTTTCTCCATGTGTTCATACACAGATCATTTTGAAGTATGGCGGTGACGAAAGAGGCAGCGTTGCAACTTCGGGGCCATGCGGATCGAGTGCTTGTCAAGTTAAGGATTTTCTGCCAAAAGCTTGGATCAAAGACTCGAAAATTTTCCTTCAATTTGGCGATGTTTCTGTAGAAACGACTTCTTACAAATGCCTCGAAGTTCAGCCGGTCAATTGTTTTCTACGAGTTTCACGTATGGCATTACGTTTTTGAATGATATTCCTTTACTTTCTAGAAATTTTCCTTCGGAACTTGTAGATGTCTGGTCCATTTATTTGCCGATATCGATCATTCAGTTCATCTCAAATATTTTTGGCACAACCAGTAGTGTAAACAGGACTGGCGGCGATTTCCTTTGAAACGGAATTGATGATCCATGTCGTGATGATATCGTTGCGCTGCATTGCCAGGCGGAAGAAAGATTTCCCTTCAAAATATTGATAAGAATGTCTAAACATCCCAATCAAAAGTTTAGAGTGCGTCCCATGAGTGATTTGAAATATAAAATTTTAAGACAAAATATTTTCAAAATTTCAAA
mRNA sequence
TGACGTAACTTTATATGGGCCTAAATGGTTAAAGCCCAAACAGATCGACCTCTATCTGGGCCTAAACTGGTGGAAGCCCAAAATTGAAAGAACCTCTCTCTTTCTTCTCTCCCTCCTCCCGGTGTCAATCGGTGGAGGAATTTCCTGAGAAATTGAAATGGAGAAATCCTTCACTCTGATTCAGACAATTGCGACCGCTGGAGCCTTCTCTGCGATTTCGTTCTGGTATGGATTCATGTTTGGAAGAGAGTCCGCTCGAAAAGACTTGGGAGATTTGATTCAAGATCTACGCCGCGGAAGCTCCAACGATTCTTCTTCTGCAACTCCTCAGTAGATCATTTTGAAGTATGGCGGTGACGAAAGAGGCAGCGTTGCAACTTCGGGGCCATGCGGATCGAGTGCTTGTCAAGTTAAGGATTTTCTGCCAAAAGCTTGGATCAAAGACTCGAAAATTTTCCTTCAATTTGGCGATGTTTCTGTAGAAACGACTTCTTACAAATGCCTCGAAGTTCAGCCGGTCAATTGTTTTCTACGAGTTTCACGTATGGCATTACGTTTTTGAATGATATTCCTTTACTTTCTAGAAATTTTCCTTCGGAACTTGTAGATGTCTGGTCCATTTATTTGCCGATATCGATCATTCAGTTCATCTCAAATATTTTTGGCACAACCAGTAGTGTAAACAGGACTGGCGGCGATTTCCTTTGAAACGGAATTGATGATCCATGTCGTGATGATATCGTTGCGCTGCATTGCCAGGCGGAAGAAAGATTTCCCTTCAAAATATTGATAAGAATGTCTAAACATCCCAATCAAAAGTTTAGAGTGCGTCCCATGAGTGATTTGAAATATAAAATTTTAAGACAAAATATTTTCAAAATTTCAAA
Coding sequence (CDS)
ATGGAGAAATCCTTCACTCTGATTCAGACAATTGCGACCGCTGGAGCCTTCTCTGCGATTTCGTTCTGGTATGGATTCATGTTTGGAAGAGAGTCCGCTCGAAAAGACTTGGGAGATTTGATTCAAGATCTACGCCGCGGAAGCTCCAACGATTCTTCTTCTGCAACTCCTCAGTAG
Protein sequence
MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGSSNDSSSATPQ
Homology
BLAST of Carg27111 vs. NCBI nr
Match:
XP_022973256.1 (uncharacterized protein LOC111471813 [Cucurbita maxima] >KAG7011478.1 hypothetical protein SDJN02_26384 [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 115.2 bits (287), Expect = 1.9e-22
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0
Query: 1 MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGSSNDSSSATPQ 59
MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGSSNDSSSATPQ
Sbjct: 1 MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGSSNDSSSATPQ 58
BLAST of Carg27111 vs. NCBI nr
Match:
XP_022931780.1 (uncharacterized protein LOC111438056 [Cucurbita moschata])
HSP 1 Score: 113.2 bits (282), Expect = 7.4e-22
Identity = 57/58 (98.28%), Postives = 57/58 (98.28%), Query Frame = 0
Query: 1 MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGSSNDSSSATPQ 59
MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGSSNDSSSA PQ
Sbjct: 1 MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGSSNDSSSANPQ 58
BLAST of Carg27111 vs. NCBI nr
Match:
XP_023553989.1 (uncharacterized protein LOC111811404 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 108.6 bits (270), Expect = 1.8e-20
Identity = 57/59 (96.61%), Postives = 58/59 (98.31%), Query Frame = 0
Query: 1 MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGSS-NDSSSATPQ 59
MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGSS +DSSSATPQ
Sbjct: 1 MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGSSDSDSSSATPQ 59
BLAST of Carg27111 vs. NCBI nr
Match:
XP_022156252.1 (uncharacterized protein LOC111023182 [Momordica charantia] >XP_022156260.1 uncharacterized protein LOC111023182 [Momordica charantia])
HSP 1 Score: 102.8 bits (255), Expect = 1.0e-18
Identity = 52/54 (96.30%), Postives = 52/54 (96.30%), Query Frame = 0
Query: 1 MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGSSNDSSS 55
MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGSSN SS
Sbjct: 1 MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGSSNSDSS 54
BLAST of Carg27111 vs. NCBI nr
Match:
XP_016903560.1 (PREDICTED: uncharacterized protein LOC103503490 [Cucumis melo] >KAA0038521.1 putative membrane lipoprotein [Cucumis melo var. makuwa] >TYK31115.1 putative membrane lipoprotein [Cucumis melo var. makuwa])
HSP 1 Score: 102.4 bits (254), Expect = 1.3e-18
Identity = 54/59 (91.53%), Postives = 55/59 (93.22%), Query Frame = 0
Query: 1 MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRG-SSNDSSSATPQ 59
M KSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRG S +DSSS TPQ
Sbjct: 1 MGKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGVSKSDSSSETPQ 59
BLAST of Carg27111 vs. ExPASy TrEMBL
Match:
A0A6J1I859 (uncharacterized protein LOC111471813 OS=Cucurbita maxima OX=3661 GN=LOC111471813 PE=4 SV=1)
HSP 1 Score: 115.2 bits (287), Expect = 9.4e-23
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0
Query: 1 MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGSSNDSSSATPQ 59
MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGSSNDSSSATPQ
Sbjct: 1 MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGSSNDSSSATPQ 58
BLAST of Carg27111 vs. ExPASy TrEMBL
Match:
A0A6J1F0E3 (uncharacterized protein LOC111438056 OS=Cucurbita moschata OX=3662 GN=LOC111438056 PE=4 SV=1)
HSP 1 Score: 113.2 bits (282), Expect = 3.6e-22
Identity = 57/58 (98.28%), Postives = 57/58 (98.28%), Query Frame = 0
Query: 1 MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGSSNDSSSATPQ 59
MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGSSNDSSSA PQ
Sbjct: 1 MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGSSNDSSSANPQ 58
BLAST of Carg27111 vs. ExPASy TrEMBL
Match:
A0A6J1DRK3 (uncharacterized protein LOC111023182 OS=Momordica charantia OX=3673 GN=LOC111023182 PE=4 SV=1)
HSP 1 Score: 102.8 bits (255), Expect = 4.8e-19
Identity = 52/54 (96.30%), Postives = 52/54 (96.30%), Query Frame = 0
Query: 1 MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGSSNDSSS 55
MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGSSN SS
Sbjct: 1 MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGSSNSDSS 54
BLAST of Carg27111 vs. ExPASy TrEMBL
Match:
A0A5A7TAA3 (Putative membrane lipoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G003920 PE=4 SV=1)
HSP 1 Score: 102.4 bits (254), Expect = 6.3e-19
Identity = 54/59 (91.53%), Postives = 55/59 (93.22%), Query Frame = 0
Query: 1 MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRG-SSNDSSSATPQ 59
M KSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRG S +DSSS TPQ
Sbjct: 1 MGKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGVSKSDSSSETPQ 59
BLAST of Carg27111 vs. ExPASy TrEMBL
Match:
A0A1S4E6G4 (uncharacterized protein LOC103503490 OS=Cucumis melo OX=3656 GN=LOC103503490 PE=4 SV=1)
HSP 1 Score: 102.4 bits (254), Expect = 6.3e-19
Identity = 54/59 (91.53%), Postives = 55/59 (93.22%), Query Frame = 0
Query: 1 MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRG-SSNDSSSATPQ 59
M KSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRG S +DSSS TPQ
Sbjct: 1 MGKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGVSKSDSSSETPQ 59
BLAST of Carg27111 vs. TAIR 10
Match:
AT4G17085.1 (Putative membrane lipoprotein )
HSP 1 Score: 81.6 bits (200), Expect = 2.2e-16
Identity = 38/54 (70.37%), Postives = 47/54 (87.04%), Query Frame = 0
Query: 1 MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGSSNDSSS 55
M+KSF+LIQT+A +G FSA+S WYGFMFGRESARK+LG LI++LRRG SN S+
Sbjct: 1 MQKSFSLIQTVAISGVFSAVSCWYGFMFGRESARKELGGLIEELRRGGSNSDST 54
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_022973256.1 | 1.9e-22 | 100.00 | uncharacterized protein LOC111471813 [Cucurbita maxima] >KAG7011478.1 hypothetic... | [more] |
XP_022931780.1 | 7.4e-22 | 98.28 | uncharacterized protein LOC111438056 [Cucurbita moschata] | [more] |
XP_023553989.1 | 1.8e-20 | 96.61 | uncharacterized protein LOC111811404 [Cucurbita pepo subsp. pepo] | [more] |
XP_022156252.1 | 1.0e-18 | 96.30 | uncharacterized protein LOC111023182 [Momordica charantia] >XP_022156260.1 uncha... | [more] |
XP_016903560.1 | 1.3e-18 | 91.53 | PREDICTED: uncharacterized protein LOC103503490 [Cucumis melo] >KAA0038521.1 put... | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1I859 | 9.4e-23 | 100.00 | uncharacterized protein LOC111471813 OS=Cucurbita maxima OX=3661 GN=LOC111471813... | [more] |
A0A6J1F0E3 | 3.6e-22 | 98.28 | uncharacterized protein LOC111438056 OS=Cucurbita moschata OX=3662 GN=LOC1114380... | [more] |
A0A6J1DRK3 | 4.8e-19 | 96.30 | uncharacterized protein LOC111023182 OS=Momordica charantia OX=3673 GN=LOC111023... | [more] |
A0A5A7TAA3 | 6.3e-19 | 91.53 | Putative membrane lipoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc... | [more] |
A0A1S4E6G4 | 6.3e-19 | 91.53 | uncharacterized protein LOC103503490 OS=Cucumis melo OX=3656 GN=LOC103503490 PE=... | [more] |
Match Name | E-value | Identity | Description | |
AT4G17085.1 | 2.2e-16 | 70.37 | Putative membrane lipoprotein | [more] |