Carg26563 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg26563
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr02: 10040544 .. 10041044 (+)
RNA-Seq Expression	Carg26563
Synteny	Carg26563

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTATCGATAATGGTGGCAAGGCCGGAAAAGAGTATGTAGGAAGCAGAGTTGAGCCAAGTGGAAAACAAATTTAAAAATAATTGTTGATTTCGTAACCATGTTTTGGAAAAATAAAACACAATAAGGTCATTTGATTTTGGCGCAGTTTCTTAAGGTCGTCCGTGTACAAAAACTCATTTATTTTCTTCTCCCTCCCTTTTTTTTCCTATGAACCCTAGATTTACGCTGTCACTCTGCTAAGAAGCCGCCGTCCACGTCCATCGTCGCCGTCGCACCACTTTGTCAAGACCCACCGTGTTTCATCCCCCTCCCCGTTCTCTTCGACGGAATCCTAGATCTTCACTGCCGCCTTCCGTACGTTCAACTTCGCTGATTCCCCACGTTCTCCATTTCTTTCCCTCTCTCCTCTGCAACCATTGACGCTGTTTGCCGTCCGCATTTTGTATTTTTTCGTTTGCAGATCGCCTCGTTCCAGGGTCACTGCCGTCGCTGCATAG

mRNA sequence

ATGAGTATCGATAATGGTGGCAAGGCCGGAAAAGAGTATGTAGGAAGCAGAGTTGAGCCAAATTTACGCTGTCACTCTGCTAAGAAGCCGCCGTCCACGTCCATCGTCGCCGTCGCACCACTTTGTCAAGACCCACCGTGTTTCATCCCCCTCCCCGTTCTCTTCGACGGAATCCTAGATCTTCACTGCCGCCTTCCATCGCCTCGTTCCAGGGTCACTGCCGTCGCTGCATAG

Coding sequence (CDS)

ATGAGTATCGATAATGGTGGCAAGGCCGGAAAAGAGTATGTAGGAAGCAGAGTTGAGCCAAATTTACGCTGTCACTCTGCTAAGAAGCCGCCGTCCACGTCCATCGTCGCCGTCGCACCACTTTGTCAAGACCCACCGTGTTTCATCCCCCTCCCCGTTCTCTTCGACGGAATCCTAGATCTTCACTGCCGCCTTCCATCGCCTCGTTCCAGGGTCACTGCCGTCGCTGCATAG

Protein sequence

MSIDNGGKAGKEYVGSRVEPNLRCHSAKKPPSTSIVAVAPLCQDPPCFIPLPVLFDGILDLHCRLPSPRSRVTAVAA

Homology

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BLAST of Carg26563 vs. NCBI nr
Match: KAG7036377.1 (hypothetical protein SDJN02_03182, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 161.8 bits (408), Expect = 2.4e-36
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MSIDNGGKAGKEYVGSRVEPNLRCHSAKKPPSTSIVAVAPLCQDPPCFIPLPVLFDGILD 60
          MSIDNGGKAGKEYVGSRVEPNLRCHSAKKPPSTSIVAVAPLCQDPPCFIPLPVLFDGILD
Sbjct: 1  MSIDNGGKAGKEYVGSRVEPNLRCHSAKKPPSTSIVAVAPLCQDPPCFIPLPVLFDGILD 60

Query: 61 LHCRLPSPRSRVTAVAA 78
          LHCRLPSPRSRVTAVAA
Sbjct: 61 LHCRLPSPRSRVTAVAA 77

The following BLAST results are available for this feature:

BLAST of Carg26563 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7036377.1	2.4e-36	100.00	hypothetical protein SDJN02_03182, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Carg26563 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg26563 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg26563 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg26563-RA	Carg26563-RA	mRNA