Carg26563 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg26563
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr02: 10040544 .. 10041044 (+)
RNA-Seq ExpressionCarg26563
SyntenyCarg26563
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTATCGATAATGGTGGCAAGGCCGGAAAAGAGTATGTAGGAAGCAGAGTTGAGCCAAGTGGAAAACAAATTTAAAAATAATTGTTGATTTCGTAACCATGTTTTGGAAAAATAAAACACAATAAGGTCATTTGATTTTGGCGCAGTTTCTTAAGGTCGTCCGTGTACAAAAACTCATTTATTTTCTTCTCCCTCCCTTTTTTTTCCTATGAACCCTAGATTTACGCTGTCACTCTGCTAAGAAGCCGCCGTCCACGTCCATCGTCGCCGTCGCACCACTTTGTCAAGACCCACCGTGTTTCATCCCCCTCCCCGTTCTCTTCGACGGAATCCTAGATCTTCACTGCCGCCTTCCGTACGTTCAACTTCGCTGATTCCCCACGTTCTCCATTTCTTTCCCTCTCTCCTCTGCAACCATTGACGCTGTTTGCCGTCCGCATTTTGTATTTTTTCGTTTGCAGATCGCCTCGTTCCAGGGTCACTGCCGTCGCTGCATAG

mRNA sequence

ATGAGTATCGATAATGGTGGCAAGGCCGGAAAAGAGTATGTAGGAAGCAGAGTTGAGCCAAATTTACGCTGTCACTCTGCTAAGAAGCCGCCGTCCACGTCCATCGTCGCCGTCGCACCACTTTGTCAAGACCCACCGTGTTTCATCCCCCTCCCCGTTCTCTTCGACGGAATCCTAGATCTTCACTGCCGCCTTCCATCGCCTCGTTCCAGGGTCACTGCCGTCGCTGCATAG

Coding sequence (CDS)

ATGAGTATCGATAATGGTGGCAAGGCCGGAAAAGAGTATGTAGGAAGCAGAGTTGAGCCAAATTTACGCTGTCACTCTGCTAAGAAGCCGCCGTCCACGTCCATCGTCGCCGTCGCACCACTTTGTCAAGACCCACCGTGTTTCATCCCCCTCCCCGTTCTCTTCGACGGAATCCTAGATCTTCACTGCCGCCTTCCATCGCCTCGTTCCAGGGTCACTGCCGTCGCTGCATAG

Protein sequence

MSIDNGGKAGKEYVGSRVEPNLRCHSAKKPPSTSIVAVAPLCQDPPCFIPLPVLFDGILDLHCRLPSPRSRVTAVAA
Homology
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BLAST of Carg26563 vs. NCBI nr
Match: KAG7036377.1 (hypothetical protein SDJN02_03182, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 161.8 bits (408), Expect = 2.4e-36
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0 

Query: 1  MSIDNGGKAGKEYVGSRVEPNLRCHSAKKPPSTSIVAVAPLCQDPPCFIPLPVLFDGILD 60
          MSIDNGGKAGKEYVGSRVEPNLRCHSAKKPPSTSIVAVAPLCQDPPCFIPLPVLFDGILD
Sbjct: 1  MSIDNGGKAGKEYVGSRVEPNLRCHSAKKPPSTSIVAVAPLCQDPPCFIPLPVLFDGILD 60

Query: 61 LHCRLPSPRSRVTAVAA 78
          LHCRLPSPRSRVTAVAA
Sbjct: 61 LHCRLPSPRSRVTAVAA 77

The following BLAST results are available for this feature:
BLAST of Carg26563 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7036377.12.4e-36100.00hypothetical protein SDJN02_03182, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg26563 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg26563 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg26563 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg26563-RACarg26563-RAmRNA