Carg25778 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg25778
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	PSII 6.1 kDa protein
Location	Carg_Chr08: 1768447 .. 1769042 (-)
RNA-Seq Expression	Carg25778
Synteny	Carg25778

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTCCGATCCCCATATTCCATTATTGTTCATTTTGCCTCCCAAAGTTCAACGCAAAGATCCCAATGGCCGCCGTCGCCTCCGCCTCTGCCGCCGCCGTCCGATCTTCTCTGGTTCAGAACCGCCCACTTCCGGCGGCTTCACCCACCACCTTCCTTCTTGGTGAGTTCTAGATTTTGCTCAAAATTGAGTAACCATTTAAATTGTTTAAAAATTAATTAATTATATGTAGTAGGGTTGCCTGCATTGGGTAAGAGAGGAGGAGTAAGGTGTTGTGTGGATGGAAAGGCTAATGGAGAAGTGGAAAACAAGTCGTGCAACTTGGGGATGGGCGCGTCGTTGATAGCTGCAGCGTGTGCTGCGACCATGTCGAGCCCAGCCATGGCTTTGGTGGATGAGAGACTGAGCACCGAAGGAACTGGCCTCCCGTTTGGTTTGAGCAACAATCTTCTTGGTTGGATTCTGTTGGGAGTTTTTGGTTTCATTTGGACATTCTATATCGTTTACACTTCTACTCTCGAAGAAGACGAAGAATCAGGCTTATCTCTGTAAACCAAACTTGTCATCTTATTATTACGATCGTTGTGGCTAATCTTAG

mRNA sequence

TCTCCGATCCCCATATTCCATTATTGTTCATTTTGCCTCCCAAAGTTCAACGCAAAGATCCCAATGGCCGCCGTCGCCTCCGCCTCTGCCGCCGCCGTCCGATCTTCTCTGGTTCAGAACCGCCCACTTCCGGCGGCTTCACCCACCACCTTCCTTCTTGTAGGGTTGCCTGCATTGGGTAAGAGAGGAGGAGTAAGGTGTTGTGTGGATGGAAAGGCTAATGGAGAAGTGGAAAACAAGTCGTGCAACTTGGGGATGGGCGCGTCGTTGATAGCTGCAGCGTGTGCTGCGACCATGTCGAGCCCAGCCATGGCTTTGGTGGATGAGAGACTGAGCACCGAAGGAACTGGCCTCCCGTTTGGTTTGAGCAACAATCTTCTTGGTTGGATTCTGTTGGGAGTTTTTGGTTTCATTTGGACATTCTATATCGTTTACACTTCTACTCTCGAAGAAGACGAAGAATCAGGCTTATCTCTGTAAACCAAACTTGTCATCTTATTATTACGATCGTTGTGGCTAATCTTAG

Coding sequence (CDS)

ATGGCCGCCGTCGCCTCCGCCTCTGCCGCCGCCGTCCGATCTTCTCTGGTTCAGAACCGCCCACTTCCGGCGGCTTCACCCACCACCTTCCTTCTTGTAGGGTTGCCTGCATTGGGTAAGAGAGGAGGAGTAAGGTGTTGTGTGGATGGAAAGGCTAATGGAGAAGTGGAAAACAAGTCGTGCAACTTGGGGATGGGCGCGTCGTTGATAGCTGCAGCGTGTGCTGCGACCATGTCGAGCCCAGCCATGGCTTTGGTGGATGAGAGACTGAGCACCGAAGGAACTGGCCTCCCGTTTGGTTTGAGCAACAATCTTCTTGGTTGGATTCTGTTGGGAGTTTTTGGTTTCATTTGGACATTCTATATCGTTTACACTTCTACTCTCGAAGAAGACGAAGAATCAGGCTTATCTCTGTAA

Protein sequence

MAAVASASAAAVRSSLVQNRPLPAASPTTFLLVGLPALGKRGGVRCCVDGKANGEVENKSCNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFGFIWTFYIVYTSTLEEDEESGLSL

Homology

[Close]

BLAST of Carg25778 vs. NCBI nr
Match: KAG6593088.1 (Photosystem II reaction center W protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7025496.1 Photosystem II reaction center W protein, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 263.8 bits (673), Expect = 8.0e-67
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0


Query: 1   MAAVASASAAAVRSSLVQNRPLPAASPTTFLLVGLPALGKRGGVRCCVDGKANGEVENKS 60
           MAAVASASAAAVRSSLVQNRPLPAASPTTFLLVGLPALGKRGGVRCCVDGKANGEVENKS
Sbjct: 1   MAAVASASAAAVRSSLVQNRPLPAASPTTFLLVGLPALGKRGGVRCCVDGKANGEVENKS 60

Query: 61  CNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFGFIWTF 120
           CNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFGFIWTF
Sbjct: 61  CNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFGFIWTF 120

Query: 121 YIVYTSTLEEDEESGLSL 139
           YIVYTSTLEEDEESGLSL
Sbjct: 121 YIVYTSTLEEDEESGLSL 138

[Close]

BLAST of Carg25778 vs. NCBI nr
Match: XP_022959615.1 (photosystem II reaction center W protein, chloroplastic-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 262.3 bits (669), Expect = 2.3e-66
Identity = 137/138 (99.28%), Postives = 137/138 (99.28%), Query Frame = 0


Query: 1   MAAVASASAAAVRSSLVQNRPLPAASPTTFLLVGLPALGKRGGVRCCVDGKANGEVENKS 60
           MAAVASASAAAVRSSLVQNRPLPAASPTTFLL GLPALGKRGGVRCCVDGKANGEVENKS
Sbjct: 1   MAAVASASAAAVRSSLVQNRPLPAASPTTFLLAGLPALGKRGGVRCCVDGKANGEVENKS 60

Query: 61  CNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFGFIWTF 120
           CNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFGFIWTF
Sbjct: 61  CNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFGFIWTF 120

Query: 121 YIVYTSTLEEDEESGLSL 139
           YIVYTSTLEEDEESGLSL
Sbjct: 121 YIVYTSTLEEDEESGLSL 138

[Close]

BLAST of Carg25778 vs. NCBI nr
Match: XP_022959616.1 (photosystem II reaction center W protein, chloroplastic-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 257.7 bits (657), Expect = 5.8e-65
Identity = 137/138 (99.28%), Postives = 137/138 (99.28%), Query Frame = 0


Query: 1   MAAVASASAAAVRSSLVQNRPLPAASPTTFLLVGLPALGKRGGVRCCVDGKANGEVENKS 60
           MAAVASASAAAVRSSLVQNRPLPAASPTTFLL GLPALGKRGGVRCCVDGKANGEVENKS
Sbjct: 1   MAAVASASAAAVRSSLVQNRPLPAASPTTFLL-GLPALGKRGGVRCCVDGKANGEVENKS 60

Query: 61  CNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFGFIWTF 120
           CNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFGFIWTF
Sbjct: 61  CNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFGFIWTF 120

Query: 121 YIVYTSTLEEDEESGLSL 139
           YIVYTSTLEEDEESGLSL
Sbjct: 121 YIVYTSTLEEDEESGLSL 137

[Close]

BLAST of Carg25778 vs. NCBI nr
Match: XP_023004262.1 (photosystem II reaction center W protein, chloroplastic-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 257.3 bits (656), Expect = 7.5e-65
Identity = 137/139 (98.56%), Postives = 137/139 (98.56%), Query Frame = 0


Query: 1   MAAVASASAAAVRSSLVQNRPLPAASPTTFLLVGLPALGKRGGVRCCVDGKANGEVENKS 60
           MAAVASASAAAVRSSLVQNRPLPAASPTTFLLVGLPALGKRGGVRCCVDGKANGEVENKS
Sbjct: 1   MAAVASASAAAVRSSLVQNRPLPAASPTTFLLVGLPALGKRGGVRCCVDGKANGEVENKS 60

Query: 61  CNLGMGASLIAA-ACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFGFIWT 120
           CNLGMGASLIAA ACAA MSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFGFIWT
Sbjct: 61  CNLGMGASLIAAVACAAAMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFGFIWT 120

Query: 121 FYIVYTSTLEEDEESGLSL 139
           FYIVYTSTLEEDEESGLSL
Sbjct: 121 FYIVYTSTLEEDEESGLSL 139

[Close]

BLAST of Carg25778 vs. NCBI nr
Match: XP_023514758.1 (photosystem II reaction center W protein, chloroplastic-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 253.8 bits (647), Expect = 8.3e-64
Identity = 133/138 (96.38%), Postives = 134/138 (97.10%), Query Frame = 0


Query: 1   MAAVASASAAAVRSSLVQNRPLPAASPTTFLLVGLPALGKRGGVRCCVDGKANGEVENKS 60
           MAAVASASAAAVRSSLVQ+RP PAASPTTFLLVGLPALGKRGGVRCCVDGKANGEVEN S
Sbjct: 1   MAAVASASAAAVRSSLVQSRPFPAASPTTFLLVGLPALGKRGGVRCCVDGKANGEVENNS 60

Query: 61  CNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFGFIWTF 120
           CNL MGASLIA ACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFGFIWTF
Sbjct: 61  CNLEMGASLIATACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFGFIWTF 120

Query: 121 YIVYTSTLEEDEESGLSL 139
           YIVYTSTLEEDEESGLSL
Sbjct: 121 YIVYTSTLEEDEESGLSL 138

[Close]

BLAST of Carg25778 vs. ExPASy Swiss-Prot
Match: Q41387 (Photosystem II reaction center W protein, chloroplastic OS=Spinacia oleracea OX=3562 GN=psbW PE=1 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 1.6e-33
Identity = 81/140 (57.86%), Postives = 102/140 (72.86%), Query Frame = 0


Query: 1   MAAVASASAAAV--RSSLVQNRPLPAASPTTFLLVGLPALGKRGGVRCCVDGKANGEVEN 60
           MA + ++S+A++  R+SLV N  +  +S     ++GLP++ KR  V C ++ K +     
Sbjct: 1   MATITASSSASLVARASLVHNSRVGVSSSP---ILGLPSMTKRSKVTCSIENKPSTTETT 60

Query: 61  KSCNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFGFIW 120
            + N  MGASL+AAA AAT+S+PAMALVDER+STEGTGLPFGLSNNLLGWIL GVFG IW
Sbjct: 61  TTTNKSMGASLLAAAAAATISNPAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIW 120

Query: 121 TFYIVYTSTLEEDEESGLSL 139
             Y VY S LEEDEESGLSL
Sbjct: 121 ALYFVYASGLEEDEESGLSL 137

[Close]

BLAST of Carg25778 vs. ExPASy Swiss-Prot
Match: Q39194 (Photosystem II reaction center W protein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSBW PE=1 SV=2)

HSP 1 Score: 133.7 bits (335), Expect = 1.6e-30
Identity = 80/137 (58.39%), Postives = 95/137 (69.34%), Query Frame = 0


Query: 7   ASAAAVRSSLVQNRPLPAASPTTFL---LVGLPALG-KRGGVRCCVDGKANGEVENKSCN 66
           AS  A  S++   RP     PT  +   ++GLP +G K+GGVRC ++ K     +     
Sbjct: 2   ASFTASASTVSAARPALLLKPTVAISAPVLGLPPMGKKKGGVRCSMETK-----QGNVSV 61

Query: 67  LGMGASLIA-AACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFGFIWTFY 126
           +G G S  A AA  A MS+PAMALVDER+STEGTGLPFGLSNNLLGWIL GVFG IWTF+
Sbjct: 62  MGAGVSAAATAALTAVMSNPAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWTFF 121

Query: 127 IVYTSTLEEDEESGLSL 139
            VYTS+LEEDEESGLSL
Sbjct: 122 FVYTSSLEEDEESGLSL 133

[Close]

BLAST of Carg25778 vs. ExPASy Swiss-Prot
Match: Q5ZBY9 (Photosystem II reaction center W protein, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=PSBW PE=2 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 1.1e-21
Identity = 71/137 (51.82%), Postives = 84/137 (61.31%), Query Frame = 0


Query: 1   MAAVASASAAAVRSSLVQNRPLPAASPTTFLLVGLPALGKRGG--VRCCVDGKANGEVEN 60
           MA V++A+A +V +  V   PL           GLP +  R    VRC    +A      
Sbjct: 1   MATVSAAAATSVVARAVLAGPL-----------GLPQMRARRSERVRCNYSKEA---ATP 60

Query: 61  KSCNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFGFIW 120
            +   G GASL+A A  A   +PAMALVDER+STEGTGL  GLSNNLLGWILLGVFG IW
Sbjct: 61  AAAVKGAGASLLAMAATA---APAMALVDERMSTEGTGLSLGLSNNLLGWILLGVFGLIW 120

Query: 121 TFYIVYTSTLEEDEESG 136
           + Y +YTS LEEDEESG
Sbjct: 121 SLYTIYTSDLEEDEESG 120

[Close]

BLAST of Carg25778 vs. ExPASy Swiss-Prot
Match: Q9SPI9 (Photosystem II reaction center W protein, chloroplastic OS=Chlamydomonas reinhardtii OX=3055 GN=psbW PE=1 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.6e-09
Identity = 31/73 (42.47%), Postives = 48/73 (65.75%), Query Frame = 0


Query: 68  SLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFGFIWTFYIVYTST 127
           ++++   A   + PA ALVDER++ +GTG PFG+++ +LGW+LLGVFG +W  + +    
Sbjct: 43  AMLSTLPATLAAHPAFALVDERMNGDGTGRPFGVNDPVLGWVLLGVFGTMWAIWFIGQKD 102

Query: 128 LE--EDEESGLSL 139
           L   ED + GL L
Sbjct: 103 LGDFEDADDGLKL 115

[Close]

BLAST of Carg25778 vs. ExPASy TrEMBL
Match: A0A6J1H6S9 (PSII 6.1 kDa protein OS=Cucurbita moschata OX=3662 GN=LOC111460641 PE=3 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 1.1e-66
Identity = 137/138 (99.28%), Postives = 137/138 (99.28%), Query Frame = 0


Query: 1   MAAVASASAAAVRSSLVQNRPLPAASPTTFLLVGLPALGKRGGVRCCVDGKANGEVENKS 60
           MAAVASASAAAVRSSLVQNRPLPAASPTTFLL GLPALGKRGGVRCCVDGKANGEVENKS
Sbjct: 1   MAAVASASAAAVRSSLVQNRPLPAASPTTFLLAGLPALGKRGGVRCCVDGKANGEVENKS 60

Query: 61  CNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFGFIWTF 120
           CNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFGFIWTF
Sbjct: 61  CNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFGFIWTF 120

Query: 121 YIVYTSTLEEDEESGLSL 139
           YIVYTSTLEEDEESGLSL
Sbjct: 121 YIVYTSTLEEDEESGLSL 138

[Close]

BLAST of Carg25778 vs. ExPASy TrEMBL
Match: A0A6J1H5C6 (PSII 6.1 kDa protein OS=Cucurbita moschata OX=3662 GN=LOC111460641 PE=3 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 2.8e-65
Identity = 137/138 (99.28%), Postives = 137/138 (99.28%), Query Frame = 0


Query: 1   MAAVASASAAAVRSSLVQNRPLPAASPTTFLLVGLPALGKRGGVRCCVDGKANGEVENKS 60
           MAAVASASAAAVRSSLVQNRPLPAASPTTFLL GLPALGKRGGVRCCVDGKANGEVENKS
Sbjct: 1   MAAVASASAAAVRSSLVQNRPLPAASPTTFLL-GLPALGKRGGVRCCVDGKANGEVENKS 60

Query: 61  CNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFGFIWTF 120
           CNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFGFIWTF
Sbjct: 61  CNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFGFIWTF 120

Query: 121 YIVYTSTLEEDEESGLSL 139
           YIVYTSTLEEDEESGLSL
Sbjct: 121 YIVYTSTLEEDEESGLSL 137

[Close]

BLAST of Carg25778 vs. ExPASy TrEMBL
Match: A0A6J1KPY5 (PSII 6.1 kDa protein OS=Cucurbita maxima OX=3661 GN=LOC111497648 PE=3 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 3.6e-65
Identity = 137/139 (98.56%), Postives = 137/139 (98.56%), Query Frame = 0


Query: 1   MAAVASASAAAVRSSLVQNRPLPAASPTTFLLVGLPALGKRGGVRCCVDGKANGEVENKS 60
           MAAVASASAAAVRSSLVQNRPLPAASPTTFLLVGLPALGKRGGVRCCVDGKANGEVENKS
Sbjct: 1   MAAVASASAAAVRSSLVQNRPLPAASPTTFLLVGLPALGKRGGVRCCVDGKANGEVENKS 60

Query: 61  CNLGMGASLIAA-ACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFGFIWT 120
           CNLGMGASLIAA ACAA MSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFGFIWT
Sbjct: 61  CNLGMGASLIAAVACAAAMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFGFIWT 120

Query: 121 FYIVYTSTLEEDEESGLSL 139
           FYIVYTSTLEEDEESGLSL
Sbjct: 121 FYIVYTSTLEEDEESGLSL 139

[Close]

BLAST of Carg25778 vs. ExPASy TrEMBL
Match: A0A6J1KYY4 (PSII 6.1 kDa protein OS=Cucurbita maxima OX=3661 GN=LOC111497648 PE=3 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 2.6e-63
Identity = 136/139 (97.84%), Postives = 136/139 (97.84%), Query Frame = 0


Query: 1   MAAVASASAAAVRSSLVQNRPLPAASPTTFLLVGLPALGKRGGVRCCVDGKANGEVENKS 60
           MAAVASASAAAVRSSLVQNRPLPAASPTTFLL GLPALGKRGGVRCCVDGKANGEVENKS
Sbjct: 1   MAAVASASAAAVRSSLVQNRPLPAASPTTFLL-GLPALGKRGGVRCCVDGKANGEVENKS 60

Query: 61  CNLGMGASLIAA-ACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFGFIWT 120
           CNLGMGASLIAA ACAA MSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFGFIWT
Sbjct: 61  CNLGMGASLIAAVACAAAMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFGFIWT 120

Query: 121 FYIVYTSTLEEDEESGLSL 139
           FYIVYTSTLEEDEESGLSL
Sbjct: 121 FYIVYTSTLEEDEESGLSL 138

[Close]

BLAST of Carg25778 vs. ExPASy TrEMBL
Match: A0A1S3BQI5 (PSII 6.1 kDa protein OS=Cucumis melo OX=3656 GN=LOC103492626 PE=3 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 6.9e-56
Identity = 123/139 (88.49%), Postives = 129/139 (92.81%), Query Frame = 0


Query: 1   MAAVASASAAAVRSSLVQNRP-LPAASPTTFLLVGLPALGKRGGVRCCVDGKANGEVENK 60
           MAAV SA+AAAVR+SLVQNRP LP+ASP  FLL GLPALGK+GGVRC ++GK NGEVENK
Sbjct: 1   MAAVTSAAAAAVRTSLVQNRPALPSASPAPFLL-GLPALGKKGGVRCSMEGKGNGEVENK 60

Query: 61  SCNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFGFIWT 120
           S NLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFG IW 
Sbjct: 61  SSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFGLIWA 120

Query: 121 FYIVYTSTLEEDEESGLSL 139
           FYIVYTSTLEEDEESGLSL
Sbjct: 121 FYIVYTSTLEEDEESGLSL 138

[Close]

BLAST of Carg25778 vs. TAIR 10
Match: AT2G30570.1 (photosystem II reaction center W )

HSP 1 Score: 133.7 bits (335), Expect = 1.2e-31
Identity = 80/137 (58.39%), Postives = 95/137 (69.34%), Query Frame = 0


Query: 7   ASAAAVRSSLVQNRPLPAASPTTFL---LVGLPALG-KRGGVRCCVDGKANGEVENKSCN 66
           AS  A  S++   RP     PT  +   ++GLP +G K+GGVRC ++ K     +     
Sbjct: 2   ASFTASASTVSAARPALLLKPTVAISAPVLGLPPMGKKKGGVRCSMETK-----QGNVSV 61

Query: 67  LGMGASLIA-AACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFGFIWTFY 126
           +G G S  A AA  A MS+PAMALVDER+STEGTGLPFGLSNNLLGWIL GVFG IWTF+
Sbjct: 62  MGAGVSAAATAALTAVMSNPAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWTFF 121

Query: 127 IVYTSTLEEDEESGLSL 139
            VYTS+LEEDEESGLSL
Sbjct: 122 FVYTSSLEEDEESGLSL 133

The following BLAST results are available for this feature:

BLAST of Carg25778 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6593088.1	8.0e-67	100.00	Photosystem II reaction center W protein, chloroplastic, partial [Cucurbita argy...	[more]
XP_022959615.1	2.3e-66	99.28	photosystem II reaction center W protein, chloroplastic-like isoform X1 [Cucurbi...	[more]
XP_022959616.1	5.8e-65	99.28	photosystem II reaction center W protein, chloroplastic-like isoform X2 [Cucurbi...	[more]
XP_023004262.1	7.5e-65	98.56	photosystem II reaction center W protein, chloroplastic-like isoform X1 [Cucurbi...	[more]
XP_023514758.1	8.3e-64	96.38	photosystem II reaction center W protein, chloroplastic-like isoform X1 [Cucurbi...	[more]

BLAST of Carg25778 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q41387	1.6e-33	57.86	Photosystem II reaction center W protein, chloroplastic OS=Spinacia oleracea OX=...	[more]
Q39194	1.6e-30	58.39	Photosystem II reaction center W protein, chloroplastic OS=Arabidopsis thaliana ...	[more]
Q5ZBY9	1.1e-21	51.82	Photosystem II reaction center W protein, chloroplastic OS=Oryza sativa subsp. j...	[more]
Q9SPI9	1.6e-09	42.47	Photosystem II reaction center W protein, chloroplastic OS=Chlamydomonas reinhar...	[more]

BLAST of Carg25778 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H6S9	1.1e-66	99.28	PSII 6.1 kDa protein OS=Cucurbita moschata OX=3662 GN=LOC111460641 PE=3 SV=1	[more]
A0A6J1H5C6	2.8e-65	99.28	PSII 6.1 kDa protein OS=Cucurbita moschata OX=3662 GN=LOC111460641 PE=3 SV=1	[more]
A0A6J1KPY5	3.6e-65	98.56	PSII 6.1 kDa protein OS=Cucurbita maxima OX=3661 GN=LOC111497648 PE=3 SV=1	[more]
A0A6J1KYY4	2.6e-63	97.84	PSII 6.1 kDa protein OS=Cucurbita maxima OX=3661 GN=LOC111497648 PE=3 SV=1	[more]
A0A1S3BQI5	6.9e-56	88.49	PSII 6.1 kDa protein OS=Cucumis melo OX=3656 GN=LOC103492626 PE=3 SV=1	[more]

BLAST of Carg25778 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G30570.1	1.2e-31	58.39	photosystem II reaction center W	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009806	Photosystem II PsbW, class 2	PFAM	PF07123	PsbW	coord: 1..138 e-value: 1.0E-51 score: 174.4
IPR009806	Photosystem II PsbW, class 2	PANTHER	PTHR34552	PHOTOSYSTEM II REACTION CENTER W PROTEIN, CHLOROPLASTIC	coord: 5..138
None	No IPR available	PANTHER	PTHR34552:SF9	PHOTOSYSTEM II REACTION CENTER W	coord: 5..138

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg25778-RA	Carg25778-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042549	photosystem II stabilization
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0009507	chloroplast