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Carg24568 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ACTTCCCCACTTCTCCTTTCCCATTTCCCCCACTGACCTTTCCCTTTCTCTCTTTCCTCTCAGAAATGGCCACCGCCAAGCTTTTTCTCGCTCTCTTCGCTCTGGCTGTCTTCTCTCTAGATCTCTCCGCTGTCTCCGCCGCTCACGATGCTCCAGCGCCGGCTGTGGACTGCTCCAGCCTCATCCTTAACATGGCCGACTGCCTCTCCTTTGTCTCCAACGACAGTACCACCACCAAGCCCGAAGGATCCTGCTGCACTGGCCTCAAGACTGTTCTCAAAGCCGACGCTGACTGCCTCTGCCAGGCCTTCAAGAACAGTGCACAATTAGGCGTCGTCCTTAACGTCACCAAGGCTCTCTCTCTCCCTGCCGCTTGCAAAGTCTCTGCTCCTGCTGCTTCTAACTGTAAATGTAAGACTAATTCCTCCAAATTGCTCTTTCAATTTCGATTTTGAGAAAAATGAAACCCTAGGTAAATGAGGAACTGATCTATTTGAGTGAAATCTTTGATTTCTTTTTGTTTTCTCAGTGTCGAACTCTCCTGCTGGTTCTCCTGGTACGATTTCTTCTCTAAACGCTTTTCGATTAGTCTTAATCTTAGTCTGATGATACCGATCTGGATTTCGGAATGTTTGTGAGGAAATGTCTGAGCGTTTATTCTATTTGCATGCAGCGATTGCGCCGGCAAACTCGCCAAAATCGGAGGCGGCGATTGCACCGGCGGTGAACGAGCCGACGGCGGCTCCAGGACCTGGAAAGTCGGCAGCGACGGGAGCGATGGTGTCAGTTGGATCTGTAATCGGCGCCATAGGAGTTGCTCTGTTGAGCAGTTTCTGAGGGGCATGCGGCGTCGTTTTGGTTGGGAGAGAAGGAGAATTTGGGGAAAATTAAATTTGTTTTCTGTGTTTTTATTTTGTGGAAGGGAAAATTTGTTGGCAGTGTTTGGCTTTGGGTTCCTTTCTCTATGGGTATAATTTATGGCGTGTGACTCAAAGCAGATTATAATATTTAATTTTTTTAGTCTTTC ACTTCCCCACTTCTCCTTTCCCATTTCCCCCACTGACCTTTCCCTTTCTCTCTTTCCTCTCAGAAATGGCCACCGCCAAGCTTTTTCTCGCTCTCTTCGCTCTGGCTGTCTTCTCTCTAGATCTCTCCGCTGTCTCCGCCGCTCACGATGCTCCAGCGCCGGCTGTGGACTGCTCCAGCCTCATCCTTAACATGGCCGACTGCCTCTCCTTTGTCTCCAACGACAGTACCACCACCAAGCCCGAAGGATCCTGCTGCACTGGCCTCAAGACTGTTCTCAAAGCCGACGCTGACTGCCTCTGCCAGGCCTTCAAGAACAGTGCACAATTAGGCGTCGTCCTTAACGTCACCAAGGCTCTCTCTCTCCCTGCCGCTTGCAAAGTCTCTGCTCCTGCTGCTTCTAACTGTAAATTGTCGAACTCTCCTGCTGGTTCTCCTGCGATTGCGCCGGCAAACTCGCCAAAATCGGAGGCGGCGATTGCACCGGCGGTGAACGAGCCGACGGCGGCTCCAGGACCTGGAAAGTCGGCAGCGACGGGAGCGATGGTGTCAGTTGGATCTGTAATCGGCGCCATAGGAGTTGCTCTGTTGAGCAGTTTCTGAGGGGCATGCGGCGTCGTTTTGGTTGGGAGAGAAGGAGAATTTGGGGAAAATTAAATTTGTTTTCTGTGTTTTTATTTTGTGGAAGGGAAAATTTGTTGGCAGTGTTTGGCTTTGGGTTCCTTTCTCTATGGGTATAATTTATGGCGTGTGACTCAAAGCAGATTATAATATTTAATTTTTTTAGTCTTTC ATGGCCACCGCCAAGCTTTTTCTCGCTCTCTTCGCTCTGGCTGTCTTCTCTCTAGATCTCTCCGCTGTCTCCGCCGCTCACGATGCTCCAGCGCCGGCTGTGGACTGCTCCAGCCTCATCCTTAACATGGCCGACTGCCTCTCCTTTGTCTCCAACGACAGTACCACCACCAAGCCCGAAGGATCCTGCTGCACTGGCCTCAAGACTGTTCTCAAAGCCGACGCTGACTGCCTCTGCCAGGCCTTCAAGAACAGTGCACAATTAGGCGTCGTCCTTAACGTCACCAAGGCTCTCTCTCTCCCTGCCGCTTGCAAAGTCTCTGCTCCTGCTGCTTCTAACTGTAAATTGTCGAACTCTCCTGCTGGTTCTCCTGCGATTGCGCCGGCAAACTCGCCAAAATCGGAGGCGGCGATTGCACCGGCGGTGAACGAGCCGACGGCGGCTCCAGGACCTGGAAAGTCGGCAGCGACGGGAGCGATGGTGTCAGTTGGATCTGTAATCGGCGCCATAGGAGTTGCTCTGTTGAGCAGTTTCTGA MATAKLFLALFALAVFSLDLSAVSAAHDAPAPAVDCSSLILNMADCLSFVSNDSTTTKPEGSCCTGLKTVLKADADCLCQAFKNSAQLGVVLNVTKALSLPAACKVSAPAASNCKLSNSPAGSPAIAPANSPKSEAAIAPAVNEPTAAPGPGKSAATGAMVSVGSVIGAIGVALLSSF Homology
BLAST of Carg24568 vs. NCBI nr
Match: XP_022963887.1 (non-specific lipid-transfer protein-like protein At5g64080 [Cucurbita moschata] >KAG7011413.1 Non-specific lipid-transfer protein-like protein [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 319.3 bits (817), Expect = 2.1e-83 Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 0
BLAST of Carg24568 vs. NCBI nr
Match: KAG6571687.1 (Non-specific lipid-transfer protein-like protein, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 318.2 bits (814), Expect = 4.6e-83 Identity = 177/178 (99.44%), Postives = 178/178 (100.00%), Query Frame = 0
BLAST of Carg24568 vs. NCBI nr
Match: XP_022967631.1 (non-specific lipid-transfer protein-like protein At5g64080 [Cucurbita maxima]) HSP 1 Score: 311.2 bits (796), Expect = 5.7e-81 Identity = 173/178 (97.19%), Postives = 174/178 (97.75%), Query Frame = 0
BLAST of Carg24568 vs. NCBI nr
Match: XP_023553599.1 (non-specific lipid-transfer protein-like protein At5g64080 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 310.8 bits (795), Expect = 7.4e-81 Identity = 173/178 (97.19%), Postives = 175/178 (98.31%), Query Frame = 0
BLAST of Carg24568 vs. NCBI nr
Match: XP_038888277.1 (non-specific lipid transfer protein GPI-anchored 31 [Benincasa hispida]) HSP 1 Score: 266.5 bits (680), Expect = 1.6e-67 Identity = 149/175 (85.14%), Postives = 159/175 (90.86%), Query Frame = 0
BLAST of Carg24568 vs. ExPASy Swiss-Prot
Match: Q8VYI9 (Non-specific lipid transfer protein GPI-anchored 31 OS=Arabidopsis thaliana OX=3702 GN=LTPG31 PE=2 SV=1) HSP 1 Score: 135.2 bits (339), Expect = 7.3e-31 Identity = 91/187 (48.66%), Postives = 121/187 (64.71%), Query Frame = 0
BLAST of Carg24568 vs. ExPASy Swiss-Prot
Match: Q9ZQI8 (Non-specific lipid transfer protein GPI-anchored 11 OS=Arabidopsis thaliana OX=3702 GN=LTPG11 PE=2 SV=1) HSP 1 Score: 120.6 bits (301), Expect = 1.9e-26 Identity = 78/149 (52.35%), Postives = 100/149 (67.11%), Query Frame = 0
BLAST of Carg24568 vs. ExPASy Swiss-Prot
Match: Q2PE70 (Non-specific lipid transfer protein GPI-anchored 4 OS=Arabidopsis thaliana OX=3702 GN=LTPG4 PE=2 SV=1) HSP 1 Score: 85.9 bits (211), Expect = 5.1e-16 Identity = 52/134 (38.81%), Postives = 79/134 (58.96%), Query Frame = 0
BLAST of Carg24568 vs. ExPASy Swiss-Prot
Match: Q2PE60 (Non-specific lipid transfer protein GPI-anchored 23 OS=Arabidopsis thaliana OX=3702 GN=LTPG23 PE=2 SV=1) HSP 1 Score: 85.5 bits (210), Expect = 6.6e-16 Identity = 51/127 (40.16%), Postives = 71/127 (55.91%), Query Frame = 0
BLAST of Carg24568 vs. ExPASy Swiss-Prot
Match: Q6ASY2 (Non-specific lipid transfer protein-like 1 OS=Oryza sativa subsp. japonica OX=39947 GN=LTPL1 PE=1 SV=1) HSP 1 Score: 73.9 bits (180), Expect = 2.0e-12 Identity = 72/188 (38.30%), Postives = 96/188 (51.06%), Query Frame = 0
BLAST of Carg24568 vs. ExPASy TrEMBL
Match: A0A6J1HGE8 (non-specific lipid-transfer protein-like protein At5g64080 OS=Cucurbita moschata OX=3662 GN=LOC111464062 PE=3 SV=1) HSP 1 Score: 319.3 bits (817), Expect = 1.0e-83 Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 0
BLAST of Carg24568 vs. ExPASy TrEMBL
Match: A0A6J1HSQ0 (non-specific lipid-transfer protein-like protein At5g64080 OS=Cucurbita maxima OX=3661 GN=LOC111467072 PE=3 SV=1) HSP 1 Score: 311.2 bits (796), Expect = 2.7e-81 Identity = 173/178 (97.19%), Postives = 174/178 (97.75%), Query Frame = 0
BLAST of Carg24568 vs. ExPASy TrEMBL
Match: A0A5A7SQU3 (Non-specific lipid-transfer protein-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G002610 PE=3 SV=1) HSP 1 Score: 253.4 bits (646), Expect = 6.8e-64 Identity = 139/177 (78.53%), Postives = 156/177 (88.14%), Query Frame = 0
BLAST of Carg24568 vs. ExPASy TrEMBL
Match: A0A1S3C000 (non-specific lipid-transfer protein-like protein At5g64080 OS=Cucumis melo OX=3656 GN=LOC103495438 PE=3 SV=1) HSP 1 Score: 253.4 bits (646), Expect = 6.8e-64 Identity = 139/177 (78.53%), Postives = 156/177 (88.14%), Query Frame = 0
BLAST of Carg24568 vs. ExPASy TrEMBL
Match: A0A6J1CK38 (non-specific lipid-transfer protein-like protein At5g64080 OS=Momordica charantia OX=3673 GN=LOC111012165 PE=3 SV=1) HSP 1 Score: 241.9 bits (616), Expect = 2.0e-60 Identity = 138/183 (75.41%), Postives = 150/183 (81.97%), Query Frame = 0
BLAST of Carg24568 vs. TAIR 10
Match: AT5G64080.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein ) HSP 1 Score: 135.2 bits (339), Expect = 5.2e-32 Identity = 91/187 (48.66%), Postives = 121/187 (64.71%), Query Frame = 0
BLAST of Carg24568 vs. TAIR 10
Match: AT5G64080.2 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein ) HSP 1 Score: 134.0 bits (336), Expect = 1.2e-31 Identity = 90/184 (48.91%), Postives = 120/184 (65.22%), Query Frame = 0
BLAST of Carg24568 vs. TAIR 10
Match: AT2G13820.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein ) HSP 1 Score: 120.6 bits (301), Expect = 1.3e-27 Identity = 78/149 (52.35%), Postives = 100/149 (67.11%), Query Frame = 0
BLAST of Carg24568 vs. TAIR 10
Match: AT2G13820.2 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein ) HSP 1 Score: 117.1 bits (292), Expect = 1.5e-26 Identity = 60/96 (62.50%), Postives = 76/96 (79.17%), Query Frame = 0
BLAST of Carg24568 vs. TAIR 10
Match: AT4G08670.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein ) HSP 1 Score: 85.9 bits (211), Expect = 3.6e-17 Identity = 52/134 (38.81%), Postives = 79/134 (58.96%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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