Carg24286 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg24286
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	actin related protein 2
Location	Carg_Chr15: 461074 .. 462100 (-)
RNA-Seq Expression	Carg24286
Synteny	Carg24286

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAGGATATTTTTTTTTGTTTCTTTGAGATTGGCAAGGAAACCTCGTGTAGGCTCATGGGTGATCTGTGTTCGTGTAGTATTTCTCTTCCGTGCTTTCCTTAACTGCTAGTTCACGCCATCGCAACCCAACCAAATCGCTCTTAGAGAAGGTGGCAGCCACTACCATCTGCTACAAATTCGCATCGCGACGGCATGGATAATCGGAAGGTTATCGTCTGCGACAACGGAACTGGGGTATCTCTTTCTTCTTTTAACCGCTGCTTCAACCTATCGATTTCTCCCCCCTCGATCACCCTCTTCTCGATTCGGTTACCTAAAATTAGATCGTTGATTAATCGCAGTATGTGAAATGTGGATTCGCCGGGGAGAATTTTCCCACATCTGTGTTTCCTTGTGTGGTGGGGAGGCCTCTGCTTCGCTACGAAGAATCGCTCATCGAACAGGAGTTGAAGGTTCGCAATTTCCCTGTTTTGTTTTGTGTCGCTCATCGAACAAAGAATCGCTCCTCCGTTTTCATTTGAATACTGTAGTCACGTGAACTGAGAAATCATCTCTGAATTACTCCTAGGACATTGTTGTCGGAGAAAGCTGTGCAGATTTGCGTCATCAACTTGATATAACCTATCCAGTTCACAATGGAGTTGTCCAAAACTGGGATGATATGGGTCATGTGTGGGACCATGCCTTTTTCAATGAACTGAAGGCAAGGATTTTGTAGCACTTACAATCAGCATTACACATATAATGCCGAACTAAATTGCTTCTGTGTTTGCTGCCAATAGATAGATCCAAAAGAATGTAAAATTTTGCTCACAGACCCACCTCTGAATCCTTCAAGGAACCGTGAACAAATGGTTTGTGAGCTTTGATTTTCTTTCAATTTTGTTTCGATTTCATTAATGAGTTGGGTCAATTTAACCTCACAGGTTGAGACGATGTTTGAGAAGTACAACTTTTCTGGGGTCTTCATTCAAATCCAAGCAGTTCTAACTTTGTATGCTCAAGGTGCTTATAAAGATGAATGA

mRNA sequence

AAAAGGATATTTTTTTTTGTTTCTTTGAGATTGGCAAGGAAACCTCGTGTAGGCTCATGGGTGATCTGTGTTCGTGTAGTATTTCTCTTCCGTGCTTTCCTTAACTGCTAGTTCACGCCATCGCAACCCAACCAAATCGCTCTTAGAGAAGGTGGCAGCCACTACCATCTGCTACAAATTCGCATCGCGACGGCATGGATAATCGGAAGGTTATCGTCTGCGACAACGGAACTGGGTATGTGAAATGTGGATTCGCCGGGGAGAATTTTCCCACATCTGTGTTTCCTTGTGTGGTGGGGAGGCCTCTGCTTCGCTACGAAGAATCGCTCATCGAACAGGAGTTGAAGGACATTGTTGTCGGAGAAAGCTGTGCAGATTTGCGTCATCAACTTGATATAACCTATCCAGTTCACAATGGAGTTGTCCAAAACTGGGATGATATGGGTCATATAGATCCAAAAGAATGTAAAATTTTGCTCACAGACCCACCTCTGAATCCTTCAAGGAACCGTGAACAAATGGTTGAGACGATGTTTGAGAAGTACAACTTTTCTGGGGTCTTCATTCAAATCCAAGCAGTTCTAACTTTGTATGCTCAAGGTGCTTATAAAGATGAATGA

Coding sequence (CDS)

ATGGATAATCGGAAGGTTATCGTCTGCGACAACGGAACTGGGTATGTGAAATGTGGATTCGCCGGGGAGAATTTTCCCACATCTGTGTTTCCTTGTGTGGTGGGGAGGCCTCTGCTTCGCTACGAAGAATCGCTCATCGAACAGGAGTTGAAGGACATTGTTGTCGGAGAAAGCTGTGCAGATTTGCGTCATCAACTTGATATAACCTATCCAGTTCACAATGGAGTTGTCCAAAACTGGGATGATATGGGTCATATAGATCCAAAAGAATGTAAAATTTTGCTCACAGACCCACCTCTGAATCCTTCAAGGAACCGTGAACAAATGGTTGAGACGATGTTTGAGAAGTACAACTTTTCTGGGGTCTTCATTCAAATCCAAGCAGTTCTAACTTTGTATGCTCAAGGTGCTTATAAAGATGAATGA

Protein sequence

MDNRKVIVCDNGTGYVKCGFAGENFPTSVFPCVVGRPLLRYEESLIEQELKDIVVGESCADLRHQLDITYPVHNGVVQNWDDMGHIDPKECKILLTDPPLNPSRNREQMVETMFEKYNFSGVFIQIQAVLTLYAQGAYKDE

Homology

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BLAST of Carg24286 vs. NCBI nr
Match: KAG7015943.1 (Actin-related protein 2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 302.8 bits (774), Expect = 1.6e-78
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0


Query: 1   MDNRKVIVCDNGTGYVKCGFAGENFPTSVFPCVVGRPLLRYEESLIEQELKDIVVGESCA 60
           MDNRKVIVCDNGTGYVKCGFAGENFPTSVFPCVVGRPLLRYEESLIEQELKDIVVGESCA
Sbjct: 1   MDNRKVIVCDNGTGYVKCGFAGENFPTSVFPCVVGRPLLRYEESLIEQELKDIVVGESCA 60

Query: 61  DLRHQLDITYPVHNGVVQNWDDMGHIDPKECKILLTDPPLNPSRNREQMVETMFEKYNFS 120
           DLRHQLDITYPVHNGVVQNWDDMGHIDPKECKILLTDPPLNPSRNREQMVETMFEKYNFS
Sbjct: 61  DLRHQLDITYPVHNGVVQNWDDMGHIDPKECKILLTDPPLNPSRNREQMVETMFEKYNFS 120

Query: 121 GVFIQIQAVLTLYAQGAYKDE 142
           GVFIQIQAVLTLYAQGAYKDE
Sbjct: 121 GVFIQIQAVLTLYAQGAYKDE 141

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BLAST of Carg24286 vs. NCBI nr
Match: XP_022939517.1 (actin-related protein 2-like isoform X1 [Cucurbita moschata] >XP_022992829.1 actin-related protein 2-like isoform X1 [Cucurbita maxima] >XP_023550681.1 actin-related protein 2-like isoform X1 [Cucurbita pepo subsp. pepo] >KAG6578359.1 Actin-related protein 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 283.5 bits (724), Expect = 1.0e-72
Identity = 136/147 (92.52%), Postives = 136/147 (92.52%), Query Frame = 0


Query: 1   MDNRKVIVCDNGTGYVKCGFAGENFPTSVFPCVVGRPLLRYEESLIEQELKDIVVGESCA 60
           MDNRKVIVCDNGTGYVKCGFAGENFPTSVFPCVVGRPLLRYEESLIEQELKDIVVGESCA
Sbjct: 1   MDNRKVIVCDNGTGYVKCGFAGENFPTSVFPCVVGRPLLRYEESLIEQELKDIVVGESCA 60

Query: 61  DLRHQLDITYPVHNGVVQNWDDMGH-----------IDPKECKILLTDPPLNPSRNREQM 120
           DLRHQLDITYPVHNGVVQNWDDMGH           IDPKECKILLTDPPLNPSRNREQM
Sbjct: 61  DLRHQLDITYPVHNGVVQNWDDMGHVWDHAFFNELKIDPKECKILLTDPPLNPSRNREQM 120

Query: 121 VETMFEKYNFSGVFIQIQAVLTLYAQG 137
           VETMFEKYNFSGVFIQIQAVLTLYAQG
Sbjct: 121 VETMFEKYNFSGVFIQIQAVLTLYAQG 147

[Close]

BLAST of Carg24286 vs. NCBI nr
Match: XP_023544804.1 (actin-related protein 2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 276.6 bits (706), Expect = 1.2e-70
Identity = 131/147 (89.12%), Postives = 135/147 (91.84%), Query Frame = 0


Query: 1   MDNRKVIVCDNGTGYVKCGFAGENFPTSVFPCVVGRPLLRYEESLIEQELKDIVVGESCA 60
           MDNRKV+VCDNGTGYVKCGFAGENFPTSVFPCVVGRPLLRYEESLIEQELKDIVVGESCA
Sbjct: 1   MDNRKVVVCDNGTGYVKCGFAGENFPTSVFPCVVGRPLLRYEESLIEQELKDIVVGESCA 60

Query: 61  DLRHQLDITYPVHNGVVQNWDDMGH-----------IDPKECKILLTDPPLNPSRNREQM 120
           DLRHQLDITYPVHNG+VQNWDDM H           IDPKECKILLTDPPLNPS+NRE+M
Sbjct: 61  DLRHQLDITYPVHNGIVQNWDDMCHVWDHAFFNELKIDPKECKILLTDPPLNPSKNREKM 120

Query: 121 VETMFEKYNFSGVFIQIQAVLTLYAQG 137
           VETMFEKYNFSGVFIQIQAVLTLYAQG
Sbjct: 121 VETMFEKYNFSGVFIQIQAVLTLYAQG 147

[Close]

BLAST of Carg24286 vs. NCBI nr
Match: XP_022956707.1 (actin-related protein 2 [Cucurbita moschata] >XP_022990529.1 actin-related protein 2 [Cucurbita maxima] >KAG6602689.1 Actin-related protein 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 276.6 bits (706), Expect = 1.2e-70
Identity = 131/147 (89.12%), Postives = 135/147 (91.84%), Query Frame = 0


Query: 1   MDNRKVIVCDNGTGYVKCGFAGENFPTSVFPCVVGRPLLRYEESLIEQELKDIVVGESCA 60
           MDNRKV+VCDNGTGYVKCGFAGENFPTSVFPCVVGRPLLRYEESLIEQELKDIVVGESCA
Sbjct: 1   MDNRKVVVCDNGTGYVKCGFAGENFPTSVFPCVVGRPLLRYEESLIEQELKDIVVGESCA 60

Query: 61  DLRHQLDITYPVHNGVVQNWDDMGH-----------IDPKECKILLTDPPLNPSRNREQM 120
           DLRHQLDITYPVHNG+VQNWDDM H           IDPKECKILLTDPPLNPS+NRE+M
Sbjct: 61  DLRHQLDITYPVHNGIVQNWDDMCHVWDHAFFNELKIDPKECKILLTDPPLNPSKNREKM 120

Query: 121 VETMFEKYNFSGVFIQIQAVLTLYAQG 137
           VETMFEKYNFSGVFIQIQAVLTLYAQG
Sbjct: 121 VETMFEKYNFSGVFIQIQAVLTLYAQG 147

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BLAST of Carg24286 vs. NCBI nr
Match: XP_008441307.1 (PREDICTED: actin-related protein 2 isoform X1 [Cucumis melo])

HSP 1 Score: 274.6 bits (701), Expect = 4.7e-70
Identity = 130/147 (88.44%), Postives = 134/147 (91.16%), Query Frame = 0


Query: 1   MDNRKVIVCDNGTGYVKCGFAGENFPTSVFPCVVGRPLLRYEESLIEQELKDIVVGESCA 60
           MDNR V+VCDNGTGYVKCGFAGENFPTSVFPCVVGRPLLRYEESLIEQELKDIVVGESCA
Sbjct: 1   MDNRNVVVCDNGTGYVKCGFAGENFPTSVFPCVVGRPLLRYEESLIEQELKDIVVGESCA 60

Query: 61  DLRHQLDITYPVHNGVVQNWDDMGH-----------IDPKECKILLTDPPLNPSRNREQM 120
           DLRHQLDITYPVHNG+VQNWDDM H           IDPKECKILLTDPPLNPS+NRE+M
Sbjct: 61  DLRHQLDITYPVHNGIVQNWDDMCHVWDHAFFNELKIDPKECKILLTDPPLNPSKNREKM 120

Query: 121 VETMFEKYNFSGVFIQIQAVLTLYAQG 137
           VETMFEKYNFSGVFIQIQAVLTLYAQG
Sbjct: 121 VETMFEKYNFSGVFIQIQAVLTLYAQG 147

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BLAST of Carg24286 vs. ExPASy Swiss-Prot
Match: Q9LSD6 (Actin-related protein 2 OS=Arabidopsis thaliana OX=3702 GN=ARP2 PE=1 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 5.9e-68
Identity = 117/147 (79.59%), Postives = 132/147 (89.80%), Query Frame = 0


Query: 1   MDNRKVIVCDNGTGYVKCGFAGENFPTSVFPCVVGRPLLRYEESLIEQELKDIVVGESCA 60
           MDN+ V+VCDNGTGYVKCGFAGENFPTSVFPCVVGRPLLRYEESL+EQ++KDIVVGE+C+
Sbjct: 1   MDNKNVVVCDNGTGYVKCGFAGENFPTSVFPCVVGRPLLRYEESLMEQQVKDIVVGETCS 60

Query: 61  DLRHQLDITYPVHNGVVQNWDDMGH-----------IDPKECKILLTDPPLNPSRNREQM 120
           +LRHQLDI YPVHNG+VQNWDDM H           I+P +CKILLTDPPLNPS+NRE+M
Sbjct: 61  ELRHQLDINYPVHNGIVQNWDDMEHVWDHAFYNELKINPSDCKILLTDPPLNPSKNREKM 120

Query: 121 VETMFEKYNFSGVFIQIQAVLTLYAQG 137
           +ETMFEKYNF+GVFIQIQAVLTLYAQG
Sbjct: 121 IETMFEKYNFAGVFIQIQAVLTLYAQG 147

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BLAST of Carg24286 vs. ExPASy Swiss-Prot
Match: A2YUL5 (Actin-related protein 2 OS=Oryza sativa subsp. indica OX=39946 GN=ARP2 PE=3 SV=2)

HSP 1 Score: 249.6 bits (636), Expect = 2.1e-65
Identity = 115/147 (78.23%), Postives = 128/147 (87.07%), Query Frame = 0


Query: 1   MDNRKVIVCDNGTGYVKCGFAGENFPTSVFPCVVGRPLLRYEESLIEQELKDIVVGESCA 60
           MD+  V+VCDNGTGYVKCGFAGENFPTSVFPCVVGRPLLRYEESL EQEL DIVVG +CA
Sbjct: 1   MDSGNVVVCDNGTGYVKCGFAGENFPTSVFPCVVGRPLLRYEESLQEQELTDIVVGAACA 60

Query: 61  DLRHQLDITYPVHNGVVQNWDDMGHI-----------DPKECKILLTDPPLNPSRNREQM 120
           DLRHQLD++YPV NG+VQ+WDDMGHI           DP ECKILLTDPPLNP +NRE+M
Sbjct: 61  DLRHQLDVSYPVTNGIVQSWDDMGHIWDHAFYSELKVDPSECKILLTDPPLNPVKNREKM 120

Query: 121 VETMFEKYNFSGVFIQIQAVLTLYAQG 137
           +ETMFEKYNF+GVFIQ+QAVL+LYAQG
Sbjct: 121 IETMFEKYNFAGVFIQVQAVLSLYAQG 147

[Close]

BLAST of Carg24286 vs. ExPASy Swiss-Prot
Match: Q6Z256 (Actin-related protein 2 OS=Oryza sativa subsp. japonica OX=39947 GN=ARP2 PE=3 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 2.1e-65
Identity = 115/147 (78.23%), Postives = 128/147 (87.07%), Query Frame = 0


Query: 1   MDNRKVIVCDNGTGYVKCGFAGENFPTSVFPCVVGRPLLRYEESLIEQELKDIVVGESCA 60
           MD+  V+VCDNGTGYVKCGFAGENFPTSVFPCVVGRPLLRYEESL EQEL DIVVG +CA
Sbjct: 1   MDSGNVVVCDNGTGYVKCGFAGENFPTSVFPCVVGRPLLRYEESLQEQELTDIVVGAACA 60

Query: 61  DLRHQLDITYPVHNGVVQNWDDMGHI-----------DPKECKILLTDPPLNPSRNREQM 120
           DLRHQLD++YPV NG+VQ+WDDMGHI           DP ECKILLTDPPLNP +NRE+M
Sbjct: 61  DLRHQLDVSYPVTNGIVQSWDDMGHIWDHAFYSELKVDPSECKILLTDPPLNPVKNREKM 120

Query: 121 VETMFEKYNFSGVFIQIQAVLTLYAQG 137
           +ETMFEKYNF+GVFIQ+QAVL+LYAQG
Sbjct: 121 IETMFEKYNFAGVFIQVQAVLSLYAQG 147

[Close]

BLAST of Carg24286 vs. ExPASy Swiss-Prot
Match: O96621 (Actin-related protein 2 OS=Dictyostelium discoideum OX=44689 GN=arpB PE=1 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 2.8e-49
Identity = 88/148 (59.46%), Postives = 111/148 (75.00%), Query Frame = 0


Query: 1   MDNRKVIVCDNGTGYVKCGFAGENFPTSVFPCVVGRPLLRYEESLIEQELKDIVVGESCA 60
           MD+ KVIV DNGTG+VKCGFAG NFPT++FP +VGRP+LR EE +   E+KDI+VG+  A
Sbjct: 1   MDSNKVIVMDNGTGFVKCGFAGANFPTAIFPSMVGRPILRSEEKVENVEIKDIMVGDEAA 60

Query: 61  DLRHQLDITYPVHNGVVQNWDDMGHI------------DPKECKILLTDPPLNPSRNREQ 120
            LR  L ITYP+ NG+++NWDD+ H+            DP ECKILLT+PP+NP  NR++
Sbjct: 61  KLRSMLQITYPLENGIIRNWDDITHVWDYALKEKLKVSDPTECKILLTEPPMNPVANRQK 120

Query: 121 MVETMFEKYNFSGVFIQIQAVLTLYAQG 137
           M+E MFEKY F  V++ IQAVLTLYAQG
Sbjct: 121 MIECMFEKYGFQAVYVAIQAVLTLYAQG 148

[Close]

BLAST of Carg24286 vs. ExPASy Swiss-Prot
Match: P53487 (Actin-related protein 2 OS=Acanthamoeba castellanii OX=5755 GN=arp2 PE=2 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 6.8e-48
Identity = 87/146 (59.59%), Postives = 107/146 (73.29%), Query Frame = 0


Query: 2   DNRKVIVCDNGTGYVKCGFAGENFPTSVFPCVVGRPLLRYEESLIEQELKDIVVGESCAD 61
           D+ KVIVCDNGTG+VKCGFA  NFP S+FP +VGRP+LR EE     E+KDI+VG+  + 
Sbjct: 3   DSSKVIVCDNGTGFVKCGFARSNFPASIFPSMVGRPILRSEEKFDNVEIKDIMVGDEASK 62

Query: 62  LRHQLDITYPVHNGVVQNWDDMGH-----------IDPKECKILLTDPPLNPSRNREQMV 121
           LR  L ITYP+ NG+V+NW+D  H           +DPK+CKILLT+PP+NP  NRE+MV
Sbjct: 63  LRSMLQITYPLDNGIVRNWEDAEHVWNYTFFEKLKVDPKDCKILLTEPPMNPLANREKMV 122

Query: 122 ETMFEKYNFSGVFIQIQAVLTLYAQG 137
           + MFEKY F   +I IQAVLTLYAQG
Sbjct: 123 QVMFEKYGFKAAYIAIQAVLTLYAQG 148

[Close]

BLAST of Carg24286 vs. ExPASy TrEMBL
Match: A0A6J1JYK0 (actin-related protein 2-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111489043 PE=3 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 4.9e-73
Identity = 136/147 (92.52%), Postives = 136/147 (92.52%), Query Frame = 0


Query: 1   MDNRKVIVCDNGTGYVKCGFAGENFPTSVFPCVVGRPLLRYEESLIEQELKDIVVGESCA 60
           MDNRKVIVCDNGTGYVKCGFAGENFPTSVFPCVVGRPLLRYEESLIEQELKDIVVGESCA
Sbjct: 1   MDNRKVIVCDNGTGYVKCGFAGENFPTSVFPCVVGRPLLRYEESLIEQELKDIVVGESCA 60

Query: 61  DLRHQLDITYPVHNGVVQNWDDMGH-----------IDPKECKILLTDPPLNPSRNREQM 120
           DLRHQLDITYPVHNGVVQNWDDMGH           IDPKECKILLTDPPLNPSRNREQM
Sbjct: 61  DLRHQLDITYPVHNGVVQNWDDMGHVWDHAFFNELKIDPKECKILLTDPPLNPSRNREQM 120

Query: 121 VETMFEKYNFSGVFIQIQAVLTLYAQG 137
           VETMFEKYNFSGVFIQIQAVLTLYAQG
Sbjct: 121 VETMFEKYNFSGVFIQIQAVLTLYAQG 147

[Close]

BLAST of Carg24286 vs. ExPASy TrEMBL
Match: A0A6J1FH07 (actin-related protein 2-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111445402 PE=3 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 4.9e-73
Identity = 136/147 (92.52%), Postives = 136/147 (92.52%), Query Frame = 0


Query: 1   MDNRKVIVCDNGTGYVKCGFAGENFPTSVFPCVVGRPLLRYEESLIEQELKDIVVGESCA 60
           MDNRKVIVCDNGTGYVKCGFAGENFPTSVFPCVVGRPLLRYEESLIEQELKDIVVGESCA
Sbjct: 1   MDNRKVIVCDNGTGYVKCGFAGENFPTSVFPCVVGRPLLRYEESLIEQELKDIVVGESCA 60

Query: 61  DLRHQLDITYPVHNGVVQNWDDMGH-----------IDPKECKILLTDPPLNPSRNREQM 120
           DLRHQLDITYPVHNGVVQNWDDMGH           IDPKECKILLTDPPLNPSRNREQM
Sbjct: 61  DLRHQLDITYPVHNGVVQNWDDMGHVWDHAFFNELKIDPKECKILLTDPPLNPSRNREQM 120

Query: 121 VETMFEKYNFSGVFIQIQAVLTLYAQG 137
           VETMFEKYNFSGVFIQIQAVLTLYAQG
Sbjct: 121 VETMFEKYNFSGVFIQIQAVLTLYAQG 147

[Close]

BLAST of Carg24286 vs. ExPASy TrEMBL
Match: A0A6J1JSA3 (actin-related protein 2 OS=Cucurbita maxima OX=3661 GN=LOC111487379 PE=3 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 5.9e-71
Identity = 131/147 (89.12%), Postives = 135/147 (91.84%), Query Frame = 0


Query: 1   MDNRKVIVCDNGTGYVKCGFAGENFPTSVFPCVVGRPLLRYEESLIEQELKDIVVGESCA 60
           MDNRKV+VCDNGTGYVKCGFAGENFPTSVFPCVVGRPLLRYEESLIEQELKDIVVGESCA
Sbjct: 1   MDNRKVVVCDNGTGYVKCGFAGENFPTSVFPCVVGRPLLRYEESLIEQELKDIVVGESCA 60

Query: 61  DLRHQLDITYPVHNGVVQNWDDMGH-----------IDPKECKILLTDPPLNPSRNREQM 120
           DLRHQLDITYPVHNG+VQNWDDM H           IDPKECKILLTDPPLNPS+NRE+M
Sbjct: 61  DLRHQLDITYPVHNGIVQNWDDMCHVWDHAFFNELKIDPKECKILLTDPPLNPSKNREKM 120

Query: 121 VETMFEKYNFSGVFIQIQAVLTLYAQG 137
           VETMFEKYNFSGVFIQIQAVLTLYAQG
Sbjct: 121 VETMFEKYNFSGVFIQIQAVLTLYAQG 147

[Close]

BLAST of Carg24286 vs. ExPASy TrEMBL
Match: A0A6J1GX50 (actin-related protein 2 OS=Cucurbita moschata OX=3662 GN=LOC111458342 PE=3 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 5.9e-71
Identity = 131/147 (89.12%), Postives = 135/147 (91.84%), Query Frame = 0


Query: 1   MDNRKVIVCDNGTGYVKCGFAGENFPTSVFPCVVGRPLLRYEESLIEQELKDIVVGESCA 60
           MDNRKV+VCDNGTGYVKCGFAGENFPTSVFPCVVGRPLLRYEESLIEQELKDIVVGESCA
Sbjct: 1   MDNRKVVVCDNGTGYVKCGFAGENFPTSVFPCVVGRPLLRYEESLIEQELKDIVVGESCA 60

Query: 61  DLRHQLDITYPVHNGVVQNWDDMGH-----------IDPKECKILLTDPPLNPSRNREQM 120
           DLRHQLDITYPVHNG+VQNWDDM H           IDPKECKILLTDPPLNPS+NRE+M
Sbjct: 61  DLRHQLDITYPVHNGIVQNWDDMCHVWDHAFFNELKIDPKECKILLTDPPLNPSKNREKM 120

Query: 121 VETMFEKYNFSGVFIQIQAVLTLYAQG 137
           VETMFEKYNFSGVFIQIQAVLTLYAQG
Sbjct: 121 VETMFEKYNFSGVFIQIQAVLTLYAQG 147

[Close]

BLAST of Carg24286 vs. ExPASy TrEMBL
Match: A0A1S3B342 (actin-related protein 2 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103485464 PE=3 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 2.3e-70
Identity = 130/147 (88.44%), Postives = 134/147 (91.16%), Query Frame = 0


Query: 1   MDNRKVIVCDNGTGYVKCGFAGENFPTSVFPCVVGRPLLRYEESLIEQELKDIVVGESCA 60
           MDNR V+VCDNGTGYVKCGFAGENFPTSVFPCVVGRPLLRYEESLIEQELKDIVVGESCA
Sbjct: 1   MDNRNVVVCDNGTGYVKCGFAGENFPTSVFPCVVGRPLLRYEESLIEQELKDIVVGESCA 60

Query: 61  DLRHQLDITYPVHNGVVQNWDDMGH-----------IDPKECKILLTDPPLNPSRNREQM 120
           DLRHQLDITYPVHNG+VQNWDDM H           IDPKECKILLTDPPLNPS+NRE+M
Sbjct: 61  DLRHQLDITYPVHNGIVQNWDDMCHVWDHAFFNELKIDPKECKILLTDPPLNPSKNREKM 120

Query: 121 VETMFEKYNFSGVFIQIQAVLTLYAQG 137
           VETMFEKYNFSGVFIQIQAVLTLYAQG
Sbjct: 121 VETMFEKYNFSGVFIQIQAVLTLYAQG 147

[Close]

BLAST of Carg24286 vs. TAIR 10
Match: AT3G27000.1 (actin related protein 2 )

HSP 1 Score: 258.1 bits (658), Expect = 4.2e-69
Identity = 117/147 (79.59%), Postives = 132/147 (89.80%), Query Frame = 0


Query: 1   MDNRKVIVCDNGTGYVKCGFAGENFPTSVFPCVVGRPLLRYEESLIEQELKDIVVGESCA 60
           MDN+ V+VCDNGTGYVKCGFAGENFPTSVFPCVVGRPLLRYEESL+EQ++KDIVVGE+C+
Sbjct: 1   MDNKNVVVCDNGTGYVKCGFAGENFPTSVFPCVVGRPLLRYEESLMEQQVKDIVVGETCS 60

Query: 61  DLRHQLDITYPVHNGVVQNWDDMGH-----------IDPKECKILLTDPPLNPSRNREQM 120
           +LRHQLDI YPVHNG+VQNWDDM H           I+P +CKILLTDPPLNPS+NRE+M
Sbjct: 61  ELRHQLDINYPVHNGIVQNWDDMEHVWDHAFYNELKINPSDCKILLTDPPLNPSKNREKM 120

Query: 121 VETMFEKYNFSGVFIQIQAVLTLYAQG 137
           +ETMFEKYNF+GVFIQIQAVLTLYAQG
Sbjct: 121 IETMFEKYNFAGVFIQIQAVLTLYAQG 147

[Close]

BLAST of Carg24286 vs. TAIR 10
Match: AT1G49240.1 (actin 8 )

HSP 1 Score: 136.0 bits (341), Expect = 2.4e-32
Identity = 68/146 (46.58%), Postives = 90/146 (61.64%), Query Frame = 0


Query: 2   DNRKVIVCDNGTGYVKCGFAGENFPTSVFPCVVGRPLLRYEESLIEQELKDIVVGESCAD 61
           D+ + IVCDNGTG VK GFAG++ P +VFP VVGRP  R+   ++    KD  VG+    
Sbjct: 5   DDIQPIVCDNGTGMVKAGFAGDDAPRAVFPSVVGRP--RHHGVMVGMNQKDAYVGDEAQS 64

Query: 62  LRHQLDITYPVHNGVVQNWDDMG-----------HIDPKECKILLTDPPLNPSRNREQMV 121
            R  L + YP+ +GVV NWDDM             I P+E  +LLT+ PLNP  NRE+M 
Sbjct: 65  KRGILTLKYPIEHGVVSNWDDMEKIWHHTFYNELRIAPEEHPVLLTEAPLNPKANREKMT 124

Query: 122 ETMFEKYNFSGVFIQIQAVLTLYAQG 137
           + MFE +N   +++ IQAVL+LYA G
Sbjct: 125 QIMFETFNSPAMYVAIQAVLSLYASG 148

[Close]

BLAST of Carg24286 vs. TAIR 10
Match: AT2G42100.1 (Actin-like ATPase superfamily protein )

HSP 1 Score: 136.0 bits (341), Expect = 2.4e-32
Identity = 69/146 (47.26%), Postives = 90/146 (61.64%), Query Frame = 0


Query: 2   DNRKVIVCDNGTGYVKCGFAGENFPTSVFPCVVGRPLLRYEESLIEQELKDIVVGESCAD 61
           D    IVCDNGTG VK GFAG++ P +VFP VVGRP  R+   ++  + KD  VG+    
Sbjct: 6   DESVAIVCDNGTGMVKAGFAGDDAPRAVFPSVVGRP--RHRGVMVGMDEKDTFVGDEAQA 65

Query: 62  LRHQLDITYPVHNGVVQNWDDMGHI-----------DPKECKILLTDPPLNPSRNREQMV 121
            R  L + YP+ +GVV NWDDM  I           +P+E  ILLT+ PLNP  NRE+M 
Sbjct: 66  RRGILSLKYPIEHGVVSNWDDMEKIWHHTFYNELRLEPEEHPILLTEAPLNPKVNREKMT 125

Query: 122 ETMFEKYNFSGVFIQIQAVLTLYAQG 137
           + MFE + F  ++I IQAVL+LY+ G
Sbjct: 126 QIMFESFAFPSMYIGIQAVLSLYSSG 149

[Close]

BLAST of Carg24286 vs. TAIR 10
Match: AT3G18780.1 (actin 2 )

HSP 1 Score: 136.0 bits (341), Expect = 2.4e-32
Identity = 68/146 (46.58%), Postives = 90/146 (61.64%), Query Frame = 0


Query: 2   DNRKVIVCDNGTGYVKCGFAGENFPTSVFPCVVGRPLLRYEESLIEQELKDIVVGESCAD 61
           D+ + IVCDNGTG VK GFAG++ P +VFP VVGRP  R+   ++    KD  VG+    
Sbjct: 5   DDIQPIVCDNGTGMVKAGFAGDDAPRAVFPSVVGRP--RHHGVMVGMNQKDAYVGDEAQS 64

Query: 62  LRHQLDITYPVHNGVVQNWDDMG-----------HIDPKECKILLTDPPLNPSRNREQMV 121
            R  L + YP+ +GVV NWDDM             I P+E  +LLT+ PLNP  NRE+M 
Sbjct: 65  KRGILTLKYPIEHGVVSNWDDMEKIWHHTFYNELRIAPEEHPVLLTEAPLNPKANREKMT 124

Query: 122 ETMFEKYNFSGVFIQIQAVLTLYAQG 137
           + MFE +N   +++ IQAVL+LYA G
Sbjct: 125 QIMFETFNSPAMYVAIQAVLSLYASG 148

[Close]

BLAST of Carg24286 vs. TAIR 10
Match: AT3G18780.2 (actin 2 )

HSP 1 Score: 136.0 bits (341), Expect = 2.4e-32
Identity = 68/146 (46.58%), Postives = 90/146 (61.64%), Query Frame = 0


Query: 2   DNRKVIVCDNGTGYVKCGFAGENFPTSVFPCVVGRPLLRYEESLIEQELKDIVVGESCAD 61
           D+ + IVCDNGTG VK GFAG++ P +VFP VVGRP  R+   ++    KD  VG+    
Sbjct: 5   DDIQPIVCDNGTGMVKAGFAGDDAPRAVFPSVVGRP--RHHGVMVGMNQKDAYVGDEAQS 64

Query: 62  LRHQLDITYPVHNGVVQNWDDMG-----------HIDPKECKILLTDPPLNPSRNREQMV 121
            R  L + YP+ +GVV NWDDM             I P+E  +LLT+ PLNP  NRE+M 
Sbjct: 65  KRGILTLKYPIEHGVVSNWDDMEKIWHHTFYNELRIAPEEHPVLLTEAPLNPKANREKMT 124

Query: 122 ETMFEKYNFSGVFIQIQAVLTLYAQG 137
           + MFE +N   +++ IQAVL+LYA G
Sbjct: 125 QIMFETFNSPAMYVAIQAVLSLYASG 148

The following BLAST results are available for this feature:

BLAST of Carg24286 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7015943.1	1.6e-78	100.00	Actin-related protein 2 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022939517.1	1.0e-72	92.52	actin-related protein 2-like isoform X1 [Cucurbita moschata] >XP_022992829.1 act...	[more]
XP_023544804.1	1.2e-70	89.12	actin-related protein 2 [Cucurbita pepo subsp. pepo]	[more]
XP_022956707.1	1.2e-70	89.12	actin-related protein 2 [Cucurbita moschata] >XP_022990529.1 actin-related prote...	[more]
XP_008441307.1	4.7e-70	88.44	PREDICTED: actin-related protein 2 isoform X1 [Cucumis melo]	[more]

BLAST of Carg24286 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LSD6	5.9e-68	79.59	Actin-related protein 2 OS=Arabidopsis thaliana OX=3702 GN=ARP2 PE=1 SV=1	[more]
A2YUL5	2.1e-65	78.23	Actin-related protein 2 OS=Oryza sativa subsp. indica OX=39946 GN=ARP2 PE=3 SV=2	[more]
Q6Z256	2.1e-65	78.23	Actin-related protein 2 OS=Oryza sativa subsp. japonica OX=39947 GN=ARP2 PE=3 SV...	[more]
O96621	2.8e-49	59.46	Actin-related protein 2 OS=Dictyostelium discoideum OX=44689 GN=arpB PE=1 SV=1	[more]
P53487	6.8e-48	59.59	Actin-related protein 2 OS=Acanthamoeba castellanii OX=5755 GN=arp2 PE=2 SV=1	[more]

BLAST of Carg24286 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JYK0	4.9e-73	92.52	actin-related protein 2-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111489...	[more]
A0A6J1FH07	4.9e-73	92.52	actin-related protein 2-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A6J1JSA3	5.9e-71	89.12	actin-related protein 2 OS=Cucurbita maxima OX=3661 GN=LOC111487379 PE=3 SV=1	[more]
A0A6J1GX50	5.9e-71	89.12	actin-related protein 2 OS=Cucurbita moschata OX=3662 GN=LOC111458342 PE=3 SV=1	[more]
A0A1S3B342	2.3e-70	88.44	actin-related protein 2 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103485464 PE=3 ...	[more]

BLAST of Carg24286 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G27000.1	4.2e-69	79.59	actin related protein 2	[more]
AT1G49240.1	2.4e-32	46.58	actin 8	[more]
AT2G42100.1	2.4e-32	47.26	Actin-like ATPase superfamily protein	[more]
AT3G18780.1	2.4e-32	46.58	actin 2	[more]
AT3G18780.2	2.4e-32	46.58	actin 2	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004000	Actin family	PRINTS	PR00190	ACTIN	coord: 25..34 score: 49.69 coord: 50..61 score: 32.17 coord: 62..84 score: 46.81
IPR004000	Actin family	PFAM	PF00022	Actin	coord: 2..136 e-value: 8.7E-29 score: 100.3
IPR004000	Actin family	PANTHER	PTHR11937	ACTIN	coord: 1..138
None	No IPR available	GENE3D	3.30.420.40		coord: 1..141 e-value: 1.7E-44 score: 153.4
None	No IPR available	PANTHER	PTHR11937:SF439	ACTIN-RELATED PROTEIN 2	coord: 1..138
None	No IPR available	CDD	cd00012	NBD_sugar-kinase_HSP70_actin	coord: 7..141 e-value: 2.3067E-6 score: 42.9612
IPR043129	ATPase, nucleotide binding domain	SUPERFAMILY	53067	Actin-like ATPase domain	coord: 1..136

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg24286-RA	Carg24286-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0034314	Arp2/3 complex-mediated actin nucleation
cellular_component	GO:0005885	Arp2/3 protein complex
molecular_function	GO:0051015	actin filament binding