Carg21954 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg21954
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	30S ribosomal protein S16
Location	Carg_Chr11: 3163040 .. 3165256 (-)
RNA-Seq Expression	Carg21954
Synteny	Carg21954

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AGGAGCCCCCCGGGAGGGGAGGCGGCAGGCGCGACTTTGGATAAATCTGTGTCATTTCAGTTTGGCGAATTTACAGGGTTTTACGAGCTCAAAAATGGTGGTGAGAATTCGATTGTCGAGGTTTGGATGTAAGAACAAGCCGTTTTACAGGGTGATGGCTGCCGATAGCCGATCTCCTAGAGACGGCAAGCATCTCGAGGTTCTAGGTTACTATAATCCCTTGCCAGGTTAATTCCTCTTTTTTTGTTTATTTCGAAAATGTGATTGATTACTCCCCTGCTAGCTTGGATGTTGGAGTTTAGATTCTCGATTTGGAGAACATTCGTGTTTTTTCTCCATTGATTTGAGTAATTTTGTGCAGGTCAAGATGGCGGTAAACGAATGGGTCTTAATTTTGAAAGAGTGAAGTAAGTGATTTCTTTTGATTTAAAGCTTGTTTATTCTTGAATATCTACGATTCCCGAATTTAAGTAGTGCATTGCACGTGTAAATACTAGTTTCCTTCGTCAGAATAGGATTATTTCGGCAATGTTTCTTCGATGGACTTTTAGGGAACCATTTCTTTGGCTAATATGCTTTCTTTGAATGATTCAACCTGTGGTTACATAGAGAATTACTAAAACGTTAAATTCTGTCTAGTCTAACAATTTAGGTTTTTAATTACAATATACAAAGTGGTCGAAACTTTTAGGTCTAGTGGTGAATCAACGTGCTATAAAAAAATAAGATGTCCTATTTGATAATAGAAAAAAAGGTCCTAAATTCAAGCTCATGTTATGATACTTTCCGTCCAATTATAGCAACAAGTCACACATTGTACTGTATGAGTCTAATTAGAATTTTGGCTACACCTGAGTGAAAATGTAAAAAAAGTGTCAATTGACTAAATTTATCTTTACTCGACAACTCAAGTTAAATGAAGTAAGCTTTTGAGTGCCCCAGTTGTTTAGTTGATTAGGTGTTTGAGAAGTGGTTCTATTTTCTTGTGGCGGCAAAGAATTGAAAAAAGTTGGTGGTTCTTTCTACATGTTAATGGCTGGAACTTCATATTGTAAGCTAAAGTCATGTCAGGAAGCAACTGAGTTGAGCAAGGAATTGAACTATGGTGCTGGCACCAACTTGTCAAAAAGTAACCAAGTGTGCGATTGTCTGATGGGCATGTCCATTGGTTAAGCCAGTAGGAAATGATAAAGTAGAGGGAGTGCACCAGTTAATTAGATACCTAAATTCAATGATCAAGGAATTGACTATTGAGATGATGGAGACAATGAGAAATCTTTACTTTGTAGAGCATCTATAAATTTGATCAAATATCAATCAGTTTTCTCATTAGGAATGTAGAATCTTTTGTTTGATTTCATTGCATTCCTAATTTCAAGTTCTATTTAATTGCTAGTAAAGATCTCAGAGGATGAAACTCGTAAGATAAATCTTTATCTTAGGATATCATTCCTATTATATGAAGGTATCATGCAATGCATAAGAGTAAACCATCATGTACAAGTCTTTAGCATTCAGCGTTTTCTCTCTAAATCGTTTCTACCCCTTCATTTTCCAAGTGTTTCTACCCCTTCTCACCCTCAAATCCAATTAAAAGGGGACCCTCCTCCACTTATTTTCCAGATTATTCAGCGAGAGTGAGTTTGCTTCGAGTTTCAGCAGCCGATTTCCTTCGTTTTTCCTTCTCCTCCCCTTCCAATCGGCCTCCCACTCCCTTCTTAAGGTACCCAACTCACCAAATCCCTCATTTCAAGCAAAAATCCGGGGTTGAAGCTGACCAAAACCTCCCTTGCATGCCACTGTTCTGTTACCTCTACCACCTGTCGTTGGTCACAGTGTACAGCCGGCAACTCACACGTTTTATGAAAATTTATTTATTCCCTTTTTATTAAAAAAAAAAATCAGATACTACATTGACTGTGCCAGTCTCCAATTTAAAGCTCATCAAGCACGATAGCATCTTAAAATTTGGAGTAACCATTTACTCTCTCCTTCCCTTTCAGGTATTGGCTTTCAGTTGGTGCTCAACCTTCAGATCCTGTGCAGCGAATTCTTTTTAGAGCAGGGGTACTTCCACCACCCCCAATGGCTGCAATGGCACGTAAAGGTGGACCACGTGATACTCGTCCTGTTGATCCTCTTAGCGGACGCTTCACAACTCCACAGAAGGCAACTGATGATTCCAATAGCAGCAAAGATGGGGACGCTGATTCATAA

mRNA sequence

AGGAGCCCCCCGGGAGGGGAGGCGGCAGGCGCGACTTTGGATAAATCTGTGTCATTTCAGTTTGGCGAATTTACAGGGTTTTACGAGCTCAAAAATGGTGGTGAGAATTCGATTGTCGAGGTTTGGATGTAAGAACAAGCCGTTTTACAGGGTGATGGCTGCCGATAGCCGATCTCCTAGAGACGGCAAGCATCTCGAGGTTCTAGGTTACTATAATCCCTTGCCAGGTCAAGATGGCGGTAAACGAATGGGTCTTAATTTTGAAAGAGTGAAGTATTGGCTTTCAGTTGGTGCTCAACCTTCAGATCCTGTGCAGCGAATTCTTTTTAGAGCAGGGGTACTTCCACCACCCCCAATGGCTGCAATGGCACGTAAAGGTGGACCACGTGATACTCGTCCTGTTGATCCTCTTAGCGGACGCTTCACAACTCCACAGAAGGCAACTGATGATTCCAATAGCAGCAAAGATGGGGACGCTGATTCATAA

Coding sequence (CDS)

ATGGTGGTGAGAATTCGATTGTCGAGGTTTGGATGTAAGAACAAGCCGTTTTACAGGGTGATGGCTGCCGATAGCCGATCTCCTAGAGACGGCAAGCATCTCGAGGTTCTAGGTTACTATAATCCCTTGCCAGGTCAAGATGGCGGTAAACGAATGGGTCTTAATTTTGAAAGAGTGAAGTATTGGCTTTCAGTTGGTGCTCAACCTTCAGATCCTGTGCAGCGAATTCTTTTTAGAGCAGGGGTACTTCCACCACCCCCAATGGCTGCAATGGCACGTAAAGGTGGACCACGTGATACTCGTCCTGTTGATCCTCTTAGCGGACGCTTCACAACTCCACAGAAGGCAACTGATGATTCCAATAGCAGCAAAGATGGGGACGCTGATTCATAA

Protein sequence

MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMAAMARKGGPRDTRPVDPLSGRFTTPQKATDDSNSSKDGDADS

Homology

[Close]

BLAST of Carg21954 vs. NCBI nr
Match: KAG6588049.1 (30S ribosomal protein S16-2, chloroplastic/mitochondrial, partial [Cucurbita argyrosperma subsp. sororia] >KAG7021943.1 30S ribosomal protein S16-2, chloroplastic/mitochondrial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 266.9 bits (681), Expect = 9.0e-68
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60
           MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK
Sbjct: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60

Query: 61  YWLSVGAQPSDPVQRILFRAGVLPPPPMAAMARKGGPRDTRPVDPLSGRFTTPQKATDDS 120
           YWLSVGAQPSDPVQRILFRAGVLPPPPMAAMARKGGPRDTRPVDPLSGRFTTPQKATDDS
Sbjct: 61  YWLSVGAQPSDPVQRILFRAGVLPPPPMAAMARKGGPRDTRPVDPLSGRFTTPQKATDDS 120

Query: 121 NSSKDGDADS 131
           NSSKDGDADS
Sbjct: 121 NSSKDGDADS 130

[Close]

BLAST of Carg21954 vs. NCBI nr
Match: XP_022968515.1 (30S ribosomal protein S16-2, chloroplastic/mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 265.4 bits (677), Expect = 2.6e-67
Identity = 129/130 (99.23%), Postives = 129/130 (99.23%), Query Frame = 0


Query: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60
           MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK
Sbjct: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60

Query: 61  YWLSVGAQPSDPVQRILFRAGVLPPPPMAAMARKGGPRDTRPVDPLSGRFTTPQKATDDS 120
           YWLSVGAQPSDPVQRILFRAGVLPPPPM AMARKGGPRDTRPVDPLSGRFTTPQKATDDS
Sbjct: 61  YWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDTRPVDPLSGRFTTPQKATDDS 120

Query: 121 NSSKDGDADS 131
           NSSKDGDADS
Sbjct: 121 NSSKDGDADS 130

[Close]

BLAST of Carg21954 vs. NCBI nr
Match: XP_022933978.1 (30S ribosomal protein S16-2, chloroplastic/mitochondrial-like [Cucurbita moschata])

HSP 1 Score: 261.5 bits (667), Expect = 3.8e-66
Identity = 127/130 (97.69%), Postives = 129/130 (99.23%), Query Frame = 0


Query: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60
           MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYY+PLPGQDGGKRMGLNFERVK
Sbjct: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYHPLPGQDGGKRMGLNFERVK 60

Query: 61  YWLSVGAQPSDPVQRILFRAGVLPPPPMAAMARKGGPRDTRPVDPLSGRFTTPQKATDDS 120
           YWLSVGAQPSDPVQRILFRAGVLPPPPM AMARKGGPRDTRPVDPLSGRFTTPQKATDDS
Sbjct: 61  YWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDTRPVDPLSGRFTTPQKATDDS 120

Query: 121 NSSKDGDADS 131
           NSSKDG+ADS
Sbjct: 121 NSSKDGNADS 130

[Close]

BLAST of Carg21954 vs. NCBI nr
Match: XP_023529314.1 (30S ribosomal protein S16-2, chloroplastic/mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 260.8 bits (665), Expect = 6.4e-66
Identity = 126/130 (96.92%), Postives = 129/130 (99.23%), Query Frame = 0


Query: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60
           MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK
Sbjct: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60

Query: 61  YWLSVGAQPSDPVQRILFRAGVLPPPPMAAMARKGGPRDTRPVDPLSGRFTTPQKATDDS 120
           YWLSVGAQPSDPVQRILFRAGVLPPPPM AMARKGGPRD+RPVDPLSGRFTTPQKATDDS
Sbjct: 61  YWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDSRPVDPLSGRFTTPQKATDDS 120

Query: 121 NSSKDGDADS 131
           NS+KDG+ADS
Sbjct: 121 NSTKDGNADS 130

[Close]

BLAST of Carg21954 vs. NCBI nr
Match: XP_022147743.1 (30S ribosomal protein S16-2, chloroplastic/mitochondrial [Momordica charantia])

HSP 1 Score: 249.2 bits (635), Expect = 1.9e-62
Identity = 122/130 (93.85%), Postives = 126/130 (96.92%), Query Frame = 0


Query: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60
           MVVR+RLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK
Sbjct: 1   MVVRLRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60

Query: 61  YWLSVGAQPSDPVQRILFRAGVLPPPPMAAMARKGGPRDTRPVDPLSGRFTTPQKATDDS 120
           YWLSVGAQPS+PVQRILFRAGVLPPPPM AMARKGGPRDTRPVDPLSGRF TP+K TDDS
Sbjct: 61  YWLSVGAQPSEPVQRILFRAGVLPPPPMVAMARKGGPRDTRPVDPLSGRFVTPEKPTDDS 120

Query: 121 NSSKDGDADS 131
            SSKDG+ADS
Sbjct: 121 -SSKDGNADS 129

[Close]

BLAST of Carg21954 vs. ExPASy Swiss-Prot
Match: Q9LTS6 (30S ribosomal protein S16-2, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPS16-2 PE=1 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 2.0e-54
Identity = 98/130 (75.38%), Postives = 116/130 (89.23%), Query Frame = 0


Query: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60
           MVVRIRLSRFGCKN+PF+RVMAADSRSPRDGKHLEVLGY+NPLPGQDGGKRMGL F+R+K
Sbjct: 1   MVVRIRLSRFGCKNRPFFRVMAADSRSPRDGKHLEVLGYFNPLPGQDGGKRMGLKFDRIK 60

Query: 61  YWLSVGAQPSDPVQRILFRAGVLPPPPMAAMARKGGPRDTRPVDPLSGRFTTPQKATDDS 120
           YWLSVGAQPSDPVQR+LFR+G+LPPPPM AM RKGG RDTRPVDP++GR+   +  T ++
Sbjct: 61  YWLSVGAQPSDPVQRLLFRSGLLPPPPMVAMGRKGGARDTRPVDPMTGRYVDAENKTVNA 120

Query: 121 NSSKDGDADS 131
           N ++  + D+
Sbjct: 121 NDNQPKEEDT 130

[Close]

BLAST of Carg21954 vs. ExPASy Swiss-Prot
Match: O65686 (30S ribosomal protein S16-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS16-1 PE=2 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 4.1e-31
Identity = 60/109 (55.05%), Postives = 84/109 (77.06%), Query Frame = 0


Query: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60
           M V+IRL+R GCK++PFYRV+ AD +S RDGK +EVLG+Y+PL G++   R+ L F+R+K
Sbjct: 1   MTVKIRLARLGCKHRPFYRVVVADEKSRRDGKQIEVLGFYDPLQGKEDADRVSLKFDRIK 60

Query: 61  YWLSVGAQPSDPVQRILFRAGVLPPPPMAAMARKGGPRDT-RPVDPLSG 109
           YWLSVGAQP+D V+ +LFRAG++PP PM  +  K G + T + V P++G
Sbjct: 61  YWLSVGAQPTDTVESMLFRAGLIPPKPMVVVGSKNGQKSTSQHVSPITG 109

[Close]

BLAST of Carg21954 vs. ExPASy Swiss-Prot
Match: Q5LNF2 (30S ribosomal protein S16 OS=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) OX=246200 GN=rpsP PE=3 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 3.2e-20
Identity = 46/83 (55.42%), Postives = 63/83 (75.90%), Query Frame = 0


Query: 1  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60
          M ++IRL+R G K +PFYR++AADSR PRDG+ +E LG YNPL  +D  +R+ ++ ERV+
Sbjct: 1  MAMKIRLARGGSKKRPFYRIVAADSRMPRDGRFIEKLGTYNPLLPKDSEERVKMDVERVQ 60

Query: 61 YWLSVGAQPSDPVQRILFRAGVL 84
          YWLS GAQ +D V R+L  AGV+
Sbjct: 61 YWLSQGAQTTDRVARMLEAAGVV 83

[Close]

BLAST of Carg21954 vs. ExPASy Swiss-Prot
Match: A8LMC0 (30S ribosomal protein S16 OS=Dinoroseobacter shibae (strain DSM 16493 / NCIMB 14021 / DFL 12) OX=398580 GN=rpsP PE=3 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 4.2e-20
Identity = 46/84 (54.76%), Postives = 62/84 (73.81%), Query Frame = 0


Query: 1  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60
          M ++IRL+R G K +PFYR++AADSR PRDG+ +E LG YNPL  +D   R+ ++ ERV+
Sbjct: 1  MAMKIRLARGGSKKRPFYRIVAADSRMPRDGRFIEKLGTYNPLLPKDSEDRVKMDLERVQ 60

Query: 61 YWLSVGAQPSDPVQRILFRAGVLP 85
          YWL  GA+P+D V R+L  A VLP
Sbjct: 61 YWLGEGAKPTDRVARMLEAAEVLP 84

[Close]

BLAST of Carg21954 vs. ExPASy Swiss-Prot
Match: A5V9P7 (30S ribosomal protein S16 OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) OX=392499 GN=rpsP PE=3 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 4.2e-20
Identity = 46/82 (56.10%), Postives = 60/82 (73.17%), Query Frame = 0


Query: 1  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60
          M V IRL+R G K +P+YR++ AD+RSPRDG  +E +G YNPL  +D  KR+ L+ +R K
Sbjct: 1  MAVSIRLARGGAKKRPYYRIVVADARSPRDGAFIEKIGAYNPLLAKDDPKRVVLDTDRAK 60

Query: 61 YWLSVGAQPSDPVQRILFRAGV 83
          +WLSVGAQP+D V R L  AGV
Sbjct: 61 HWLSVGAQPTDRVARFLDAAGV 82

[Close]

BLAST of Carg21954 vs. ExPASy TrEMBL
Match: A0A6J1HXD7 (30S ribosomal protein S16-2, chloroplastic/mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111467724 PE=3 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 1.3e-67
Identity = 129/130 (99.23%), Postives = 129/130 (99.23%), Query Frame = 0


Query: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60
           MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK
Sbjct: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60

Query: 61  YWLSVGAQPSDPVQRILFRAGVLPPPPMAAMARKGGPRDTRPVDPLSGRFTTPQKATDDS 120
           YWLSVGAQPSDPVQRILFRAGVLPPPPM AMARKGGPRDTRPVDPLSGRFTTPQKATDDS
Sbjct: 61  YWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDTRPVDPLSGRFTTPQKATDDS 120

Query: 121 NSSKDGDADS 131
           NSSKDGDADS
Sbjct: 121 NSSKDGDADS 130

[Close]

BLAST of Carg21954 vs. ExPASy TrEMBL
Match: A0A6J1F6D0 (30S ribosomal protein S16-2, chloroplastic/mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111441226 PE=3 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 1.8e-66
Identity = 127/130 (97.69%), Postives = 129/130 (99.23%), Query Frame = 0


Query: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60
           MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYY+PLPGQDGGKRMGLNFERVK
Sbjct: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYHPLPGQDGGKRMGLNFERVK 60

Query: 61  YWLSVGAQPSDPVQRILFRAGVLPPPPMAAMARKGGPRDTRPVDPLSGRFTTPQKATDDS 120
           YWLSVGAQPSDPVQRILFRAGVLPPPPM AMARKGGPRDTRPVDPLSGRFTTPQKATDDS
Sbjct: 61  YWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDTRPVDPLSGRFTTPQKATDDS 120

Query: 121 NSSKDGDADS 131
           NSSKDG+ADS
Sbjct: 121 NSSKDGNADS 130

[Close]

BLAST of Carg21954 vs. ExPASy TrEMBL
Match: A0A6J1D251 (30S ribosomal protein S16-2, chloroplastic/mitochondrial OS=Momordica charantia OX=3673 GN=LOC111016603 PE=3 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 9.4e-63
Identity = 122/130 (93.85%), Postives = 126/130 (96.92%), Query Frame = 0


Query: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60
           MVVR+RLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK
Sbjct: 1   MVVRLRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60

Query: 61  YWLSVGAQPSDPVQRILFRAGVLPPPPMAAMARKGGPRDTRPVDPLSGRFTTPQKATDDS 120
           YWLSVGAQPS+PVQRILFRAGVLPPPPM AMARKGGPRDTRPVDPLSGRF TP+K TDDS
Sbjct: 61  YWLSVGAQPSEPVQRILFRAGVLPPPPMVAMARKGGPRDTRPVDPLSGRFVTPEKPTDDS 120

Query: 121 NSSKDGDADS 131
            SSKDG+ADS
Sbjct: 121 -SSKDGNADS 129

[Close]

BLAST of Carg21954 vs. ExPASy TrEMBL
Match: A0A5D3CDW9 (30S ribosomal protein S16 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G001970 PE=3 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 3.3e-60
Identity = 114/130 (87.69%), Postives = 122/130 (93.85%), Query Frame = 0


Query: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60
           MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLE+LGYYNPLPGQDGGKRMG+NFERVK
Sbjct: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGINFERVK 60

Query: 61  YWLSVGAQPSDPVQRILFRAGVLPPPPMAAMARKGGPRDTRPVDPLSGRFTTPQKATDDS 120
           YWLSVGAQPSDP+QRILFRAG+LPPPPM AM RKGGPRDTRPVDPLSGRF TP+K   DS
Sbjct: 61  YWLSVGAQPSDPMQRILFRAGLLPPPPMVAMGRKGGPRDTRPVDPLSGRFVTPEKKPTDS 120

Query: 121 NSSKDGDADS 131
           ++ + GDADS
Sbjct: 121 SNGEVGDADS 130

[Close]

BLAST of Carg21954 vs. ExPASy TrEMBL
Match: A0A1S3BQ70 (30S ribosomal protein S16 OS=Cucumis melo OX=3656 GN=LOC103492337 PE=3 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 3.3e-60
Identity = 114/130 (87.69%), Postives = 122/130 (93.85%), Query Frame = 0


Query: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60
           MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLE+LGYYNPLPGQDGGKRMG+NFERVK
Sbjct: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGINFERVK 60

Query: 61  YWLSVGAQPSDPVQRILFRAGVLPPPPMAAMARKGGPRDTRPVDPLSGRFTTPQKATDDS 120
           YWLSVGAQPSDP+QRILFRAG+LPPPPM AM RKGGPRDTRPVDPLSGRF TP+K   DS
Sbjct: 61  YWLSVGAQPSDPMQRILFRAGLLPPPPMVAMGRKGGPRDTRPVDPLSGRFVTPEKKPTDS 120

Query: 121 NSSKDGDADS 131
           ++ + GDADS
Sbjct: 121 SNGEVGDADS 130

[Close]

BLAST of Carg21954 vs. TAIR 10
Match: AT5G56940.1 (Ribosomal protein S16 family protein )

HSP 1 Score: 213.0 bits (541), Expect = 1.4e-55
Identity = 98/130 (75.38%), Postives = 116/130 (89.23%), Query Frame = 0


Query: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60
           MVVRIRLSRFGCKN+PF+RVMAADSRSPRDGKHLEVLGY+NPLPGQDGGKRMGL F+R+K
Sbjct: 1   MVVRIRLSRFGCKNRPFFRVMAADSRSPRDGKHLEVLGYFNPLPGQDGGKRMGLKFDRIK 60

Query: 61  YWLSVGAQPSDPVQRILFRAGVLPPPPMAAMARKGGPRDTRPVDPLSGRFTTPQKATDDS 120
           YWLSVGAQPSDPVQR+LFR+G+LPPPPM AM RKGG RDTRPVDP++GR+   +  T ++
Sbjct: 61  YWLSVGAQPSDPVQRLLFRSGLLPPPPMVAMGRKGGARDTRPVDPMTGRYVDAENKTVNA 120

Query: 121 NSSKDGDADS 131
           N ++  + D+
Sbjct: 121 NDNQPKEEDT 130

[Close]

BLAST of Carg21954 vs. TAIR 10
Match: AT4G34620.1 (small subunit ribosomal protein 16 )

HSP 1 Score: 135.6 bits (340), Expect = 2.9e-32
Identity = 60/109 (55.05%), Postives = 84/109 (77.06%), Query Frame = 0


Query: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60
           M V+IRL+R GCK++PFYRV+ AD +S RDGK +EVLG+Y+PL G++   R+ L F+R+K
Sbjct: 1   MTVKIRLARLGCKHRPFYRVVVADEKSRRDGKQIEVLGFYDPLQGKEDADRVSLKFDRIK 60

Query: 61  YWLSVGAQPSDPVQRILFRAGVLPPPPMAAMARKGGPRDT-RPVDPLSG 109
           YWLSVGAQP+D V+ +LFRAG++PP PM  +  K G + T + V P++G
Sbjct: 61  YWLSVGAQPTDTVESMLFRAGLIPPKPMVVVGSKNGQKSTSQHVSPITG 109

[Close]

BLAST of Carg21954 vs. TAIR 10
Match: ATCG00050.1 (ribosomal protein S16 )

HSP 1 Score: 55.1 bits (131), Expect = 5.0e-08
Identity = 28/81 (34.57%), Postives = 45/81 (55.56%), Query Frame = 0


Query: 2  VVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKY 61
          +V++RL R G K +  YR++A D R  R+G+ L  +G+Y+P+  Q       LN   +  
Sbjct: 1  MVKLRLKRCGRKQRAVYRILAIDVRYRREGRDLSKVGFYDPITNQ-----TFLNLSAILD 60

Query: 62 WLSVGAQPSDPVQRILFRAGV 83
          +L  GAQP+     I  +AG+
Sbjct: 61 FLKKGAQPTRTAHDISKKAGI 76

The following BLAST results are available for this feature:

BLAST of Carg21954 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6588049.1	9.0e-68	100.00	30S ribosomal protein S16-2, chloroplastic/mitochondrial, partial [Cucurbita arg...	[more]
XP_022968515.1	2.6e-67	99.23	30S ribosomal protein S16-2, chloroplastic/mitochondrial-like [Cucurbita maxima]	[more]
XP_022933978.1	3.8e-66	97.69	30S ribosomal protein S16-2, chloroplastic/mitochondrial-like [Cucurbita moschat...	[more]
XP_023529314.1	6.4e-66	96.92	30S ribosomal protein S16-2, chloroplastic/mitochondrial-like [Cucurbita pepo su...	[more]
XP_022147743.1	1.9e-62	93.85	30S ribosomal protein S16-2, chloroplastic/mitochondrial [Momordica charantia]	[more]

BLAST of Carg21954 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LTS6	2.0e-54	75.38	30S ribosomal protein S16-2, chloroplastic/mitochondrial OS=Arabidopsis thaliana...	[more]
O65686	4.1e-31	55.05	30S ribosomal protein S16-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RP...	[more]
Q5LNF2	3.2e-20	55.42	30S ribosomal protein S16 OS=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 /...	[more]
A8LMC0	4.2e-20	54.76	30S ribosomal protein S16 OS=Dinoroseobacter shibae (strain DSM 16493 / NCIMB 14...	[more]
A5V9P7	4.2e-20	56.10	30S ribosomal protein S16 OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM...	[more]

BLAST of Carg21954 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HXD7	1.3e-67	99.23	30S ribosomal protein S16-2, chloroplastic/mitochondrial-like OS=Cucurbita maxim...	[more]
A0A6J1F6D0	1.8e-66	97.69	30S ribosomal protein S16-2, chloroplastic/mitochondrial-like OS=Cucurbita mosch...	[more]
A0A6J1D251	9.4e-63	93.85	30S ribosomal protein S16-2, chloroplastic/mitochondrial OS=Momordica charantia ...	[more]
A0A5D3CDW9	3.3e-60	87.69	30S ribosomal protein S16 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3BQ70	3.3e-60	87.69	30S ribosomal protein S16 OS=Cucumis melo OX=3656 GN=LOC103492337 PE=3 SV=1	[more]

BLAST of Carg21954 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G56940.1	1.4e-55	75.38	Ribosomal protein S16 family protein	[more]
AT4G34620.1	2.9e-32	55.05	small subunit ribosomal protein 16	[more]
ATCG00050.1	5.0e-08	34.57	ribosomal protein S16	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023803	Ribosomal protein S16 domain superfamily	GENE3D	3.30.1320.10		coord: 1..126 e-value: 1.4E-46 score: 159.4
IPR023803	Ribosomal protein S16 domain superfamily	SUPERFAMILY	54565	Ribosomal protein S16	coord: 3..94
IPR000307	Ribosomal protein S16	PFAM	PF00886	Ribosomal_S16	coord: 9..70 e-value: 7.2E-27 score: 93.2
IPR000307	Ribosomal protein S16	TIGRFAM	TIGR00002	TIGR00002	coord: 3..82 e-value: 7.2E-32 score: 107.2
IPR000307	Ribosomal protein S16	PANTHER	PTHR12919	30S RIBOSOMAL PROTEIN S16	coord: 1..126
IPR000307	Ribosomal protein S16	HAMAP	MF_00385	Ribosomal_S16	coord: 2..80 score: 23.762827
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 84..130
None	No IPR available	PANTHER	PTHR12919:SF30	30S RIBOSOMAL PROTEIN S16-LIKE	coord: 1..126

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg21954-RA	Carg21954-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000724	double-strand break repair via homologous recombination
biological_process	GO:0006334	nucleosome assembly
biological_process	GO:0006412	translation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005634	nucleus
cellular_component	GO:0015935	small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0008094	ATP-dependent activity, acting on DNA
molecular_function	GO:0003697	single-stranded DNA binding
molecular_function	GO:0003735	structural constituent of ribosome