Carg20402 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg20402
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Transcription factor UPBEAT1-like
Location	Carg_Chr01: 2364454 .. 2364759 (-)
RNA-Seq Expression	Carg20402
Synteny	Carg20402

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCATGGAAGCAATCAACGAGAAGAGCGGTTTTGCGATCGAGGTACGGTTCTAGGATCCTCAGAGCTCGTAGAATCCACAAAAATGGCGGAAAAGCGTGCTCATCAGACGTATCGGCGAGGCTTGAGGCGCTCCAGAGTCTCATTCCGACTCAGAACAACGGCGAAGGACATCACCGGAGATCGGAGGAGTTGTTTCAAGAGACGGCGGATTACATCGTGCTTTTGAAGAATCAGGTGTTCGTCTTGCAGAGGCTGATCGAGTTTTACGGATCCGATGAGAGAGAAAATGCCGTATCAGCGTAG

mRNA sequence

ATGTCATGGAAGCAATCAACGAGAAGAGCGGTTTTGCGATCGAGGTACGGTTCTAGGATCCTCAGAGCTCGTAGAATCCACAAAAATGGCGGAAAAGCGTGCTCATCAGACGTATCGGCGAGGCTTGAGGCGCTCCAGAGTCTCATTCCGACTCAGAACAACGGCGAAGGACATCACCGGAGATCGGAGGAGTTGTTTCAAGAGACGGCGGATTACATCGTGTTCGTCTTGCAGAGGCTGATCGAGTTTTACGGATCCGATGAGAGAGAAAATGCCGTATCAGCGTAG

Coding sequence (CDS)

ATGTCATGGAAGCAATCAACGAGAAGAGCGGTTTTGCGATCGAGGTACGGTTCTAGGATCCTCAGAGCTCGTAGAATCCACAAAAATGGCGGAAAAGCGTGCTCATCAGACGTATCGGCGAGGCTTGAGGCGCTCCAGAGTCTCATTCCGACTCAGAACAACGGCGAAGGACATCACCGGAGATCGGAGGAGTTGTTTCAAGAGACGGCGGATTACATCGTGTTCGTCTTGCAGAGGCTGATCGAGTTTTACGGATCCGATGAGAGAGAAAATGCCGTATCAGCGTAG

Protein sequence

MSWKQSTRRAVLRSRYGSRILRARRIHKNGGKACSSDVSARLEALQSLIPTQNNGEGHHRRSEELFQETADYIVFVLQRLIEFYGSDERENAVSA

Homology

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BLAST of Carg20402 vs. NCBI nr
Match: KAG7036793.1 (hypothetical protein SDJN02_00413, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 188.0 bits (476), Expect = 3.9e-44
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 1  MSWKQSTRRAVLRSRYGSRILRARRIHKNGGKACSSDVSARLEALQSLIPTQNNGEGHHR 60
          MSWKQSTRRAVLRSRYGSRILRARRIHKNGGKACSSDVSARLEALQSLIPTQNNGEGHHR
Sbjct: 1  MSWKQSTRRAVLRSRYGSRILRARRIHKNGGKACSSDVSARLEALQSLIPTQNNGEGHHR 60

Query: 61 RSEELFQETADYIVFVLQRLIEFYGSDERENAVSA 96
          RSEELFQETADYIVFVLQRLIEFYGSDERENAVSA
Sbjct: 61 RSEELFQETADYIVFVLQRLIEFYGSDERENAVSA 95

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BLAST of Carg20402 vs. NCBI nr
Match: KAG6607102.1 (hypothetical protein SDJN03_00444, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 181.4 bits (459), Expect = 3.6e-42
Identity = 95/101 (94.06%), Postives = 95/101 (94.06%), Query Frame = 0


Query: 1   MSWKQSTRRAVLRSRYGSRILRARRIHKNGGKACSSDVSARLEALQSLIPTQNNGEGHHR 60
           MSWKQSTRRAVLRSRYGSRILRARRIHKNGGKACSSDVSARLEALQSLIPTQNNGEGHHR
Sbjct: 1   MSWKQSTRRAVLRSRYGSRILRARRIHKNGGKACSSDVSARLEALQSLIPTQNNGEGHHR 60

Query: 61  RSEELFQETADYI------VFVLQRLIEFYGSDERENAVSA 96
           RSEELFQETADYI      VFVLQRLIEFYGSDERENAVSA
Sbjct: 61  RSEELFQETADYIVLLKNQVFVLQRLIEFYGSDERENAVSA 101

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BLAST of Carg20402 vs. NCBI nr
Match: KAA0056655.1 (transcription factor UPBEAT1-like [Cucumis melo var. makuwa])

HSP 1 Score: 111.7 bits (278), Expect = 3.5e-21
Identity = 63/99 (63.64%), Postives = 79/99 (79.80%), Query Frame = 0


Query: 3   WKQSTRRAVLRSRYGSRILRARRIHKNGGKACSSDVSARLEALQSLIPTQNNGEGHHRRS 62
           WKQSTRR VL SR     +R  R H+NGG AC+SD+SA+LE+LQSLIP++++ EG  RR+
Sbjct: 12  WKQSTRRTVLPSRK----VRGGRNHQNGGMACASDLSAKLESLQSLIPSRSDEEG-VRRA 71

Query: 63  EELFQETADYI------VFVLQRLIEFYGSDERENAVSA 96
           E+LF++TADYI      VFVLQRLIEFYGSD+RENAVS+
Sbjct: 72  EDLFKQTADYIVLLKSQVFVLQRLIEFYGSDDRENAVSS 105

[Close]

BLAST of Carg20402 vs. NCBI nr
Match: TYK04615.1 (transcription factor UPBEAT1-like [Cucumis melo var. makuwa])

HSP 1 Score: 111.7 bits (278), Expect = 3.5e-21
Identity = 63/99 (63.64%), Postives = 79/99 (79.80%), Query Frame = 0


Query: 3   WKQSTRRAVLRSRYGSRILRARRIHKNGGKACSSDVSARLEALQSLIPTQNNGEGHHRRS 62
           WKQSTRR VL SR     +R  R H+NGG AC+SD+SA+LE+LQSLIP++++ EG  RR+
Sbjct: 12  WKQSTRRTVLPSRK----VRGGRNHQNGGMACASDLSAKLESLQSLIPSRSDEEG-VRRA 71

Query: 63  EELFQETADYI------VFVLQRLIEFYGSDERENAVSA 96
           E+LF++TADYI      VFVLQRLIEFYGSD+RENAVS+
Sbjct: 72  EDLFKQTADYIVLLKSQVFVLQRLIEFYGSDDRENAVSS 105

[Close]

BLAST of Carg20402 vs. NCBI nr
Match: PON40768.1 (transcription factor UPBEAT-like protein [Parasponia andersonii])

HSP 1 Score: 72.4 bits (176), Expect = 2.4e-09
Identity = 49/98 (50.00%), Postives = 61/98 (62.24%), Query Frame = 0


Query: 4   KQSTRRAVLRSR-YGSRILRARRIHKNGGKACSSDVSARLEALQSLIPTQNNGEGHHRRS 63
           K + RR   R R   SR   ARR   NGG  CSS VS +LEAL+ LIP     EG   ++
Sbjct: 9   KTNVRRTRRRGRKTRSRDCVARRSCNNGGGTCSSKVSGKLEALKKLIP---GHEGEIVKT 68

Query: 64  EELFQETADYIVF------VLQRLIEFYGSDERENAVS 95
           ++LFQ+TADYIV       +LQ+LIEFYGS + E+AVS
Sbjct: 69  DQLFQQTADYIVLLRTQVVLLQKLIEFYGSADSEHAVS 103

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BLAST of Carg20402 vs. ExPASy TrEMBL
Match: A0A5A7UT08 (Transcription factor UPBEAT1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold288G001870 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.7e-21
Identity = 63/99 (63.64%), Postives = 79/99 (79.80%), Query Frame = 0


Query: 3   WKQSTRRAVLRSRYGSRILRARRIHKNGGKACSSDVSARLEALQSLIPTQNNGEGHHRRS 62
           WKQSTRR VL SR     +R  R H+NGG AC+SD+SA+LE+LQSLIP++++ EG  RR+
Sbjct: 12  WKQSTRRTVLPSRK----VRGGRNHQNGGMACASDLSAKLESLQSLIPSRSDEEG-VRRA 71

Query: 63  EELFQETADYI------VFVLQRLIEFYGSDERENAVSA 96
           E+LF++TADYI      VFVLQRLIEFYGSD+RENAVS+
Sbjct: 72  EDLFKQTADYIVLLKSQVFVLQRLIEFYGSDDRENAVSS 105

[Close]

BLAST of Carg20402 vs. ExPASy TrEMBL
Match: A0A5D3BZU8 (Transcription factor UPBEAT1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold351G00200 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.7e-21
Identity = 63/99 (63.64%), Postives = 79/99 (79.80%), Query Frame = 0


Query: 3   WKQSTRRAVLRSRYGSRILRARRIHKNGGKACSSDVSARLEALQSLIPTQNNGEGHHRRS 62
           WKQSTRR VL SR     +R  R H+NGG AC+SD+SA+LE+LQSLIP++++ EG  RR+
Sbjct: 12  WKQSTRRTVLPSRK----VRGGRNHQNGGMACASDLSAKLESLQSLIPSRSDEEG-VRRA 71

Query: 63  EELFQETADYI------VFVLQRLIEFYGSDERENAVSA 96
           E+LF++TADYI      VFVLQRLIEFYGSD+RENAVS+
Sbjct: 72  EDLFKQTADYIVLLKSQVFVLQRLIEFYGSDDRENAVSS 105

[Close]

BLAST of Carg20402 vs. ExPASy TrEMBL
Match: A0A2P5AW87 (Transcription factor UPBEAT-like protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_294590 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.1e-09
Identity = 49/98 (50.00%), Postives = 61/98 (62.24%), Query Frame = 0


Query: 4   KQSTRRAVLRSR-YGSRILRARRIHKNGGKACSSDVSARLEALQSLIPTQNNGEGHHRRS 63
           K + RR   R R   SR   ARR   NGG  CSS VS +LEAL+ LIP     EG   ++
Sbjct: 9   KTNVRRTRRRGRKTRSRDCVARRSCNNGGGTCSSKVSGKLEALKKLIP---GHEGEIVKT 68

Query: 64  EELFQETADYIVF------VLQRLIEFYGSDERENAVS 95
           ++LFQ+TADYIV       +LQ+LIEFYGS + E+AVS
Sbjct: 69  DQLFQQTADYIVLLRTQVVLLQKLIEFYGSADSEHAVS 103

[Close]

BLAST of Carg20402 vs. ExPASy TrEMBL
Match: A0A6J5UGL2 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS23457 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.5e-09
Identity = 49/105 (46.67%), Postives = 64/105 (60.95%), Query Frame = 0


Query: 1   MSWKQSTRRAVLRSRYGSRILRA-RRIHKNGG---KACSSDVSARLEALQSLIPTQNNGE 60
           ++ ++ TRR   R R GSR   A RR   NGG   K  S  VSA+LE L+SLI   + G+
Sbjct: 12  LAGRRRTRRISSRRRLGSRACGAPRRSFNNGGRKSKCSSKTVSAKLETLKSLISPSHAGK 71

Query: 61  GHHRRSEELFQETADYIVF------VLQRLIEFYGSDERENAVSA 96
               +++ELFQETADYIV       +LQRL+E YGS E+EN  +A
Sbjct: 72  --TLKADELFQETADYIVLLRTQVVILQRLVELYGSSEKENIAAA 114

[Close]

BLAST of Carg20402 vs. ExPASy TrEMBL
Match: A0A314YX88 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_32000 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 2.6e-09
Identity = 49/105 (46.67%), Postives = 63/105 (60.00%), Query Frame = 0


Query: 1   MSWKQSTRRAVLRSRYGSRILRA-RRIHKNGG---KACSSDVSARLEALQSLIPTQNNGE 60
           ++ ++ TRR   R R GSR   A RR   NGG   K  S  VSA+LE L+SLI   + G+
Sbjct: 12  LAGRRRTRRTSSRRRLGSRACGAPRRSFNNGGRKSKCSSKTVSAKLETLKSLISPSHAGK 71

Query: 61  GHHRRSEELFQETADYIVF------VLQRLIEFYGSDERENAVSA 96
               ++EELFQETADYIV       +LQRL+E YGS E+E   +A
Sbjct: 72  --TLKAEELFQETADYIVLLRTQVVILQRLVELYGSSEKEKIAAA 114

[Close]

BLAST of Carg20402 vs. TAIR 10
Match: AT3G29370.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G39240.1); Has 16 Blast hits to 16 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 44.7 bits (104), Expect = 4.9e-05
Identity = 37/98 (37.76%), Postives = 49/98 (50.00%), Query Frame = 0


Query: 4   KQSTRRAVLRSRYGSRILRARRIHKNGGKACSSDVSARLEALQSLIPTQNNGEGHHRRSE 63
           K  T R   R+   SR         NG       V  +L AL+SL+P   N  G    +E
Sbjct: 5   KTQTTRGRRRANVSSRTRVLHTCCGNGSSDGGKTVMEKLLALKSLLPPPVNVGG--GETE 64

Query: 64  ELFQETADYI------VFVLQRLIEFY--GSDERENAV 94
           ELFQETA+YI      V VL++LIE Y   SD++++ V
Sbjct: 65  ELFQETAEYIVKLRTQVVVLKKLIEIYDNSSDQKKDVV 100

The following BLAST results are available for this feature:

BLAST of Carg20402 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7036793.1	3.9e-44	100.00	hypothetical protein SDJN02_00413, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6607102.1	3.6e-42	94.06	hypothetical protein SDJN03_00444, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAA0056655.1	3.5e-21	63.64	transcription factor UPBEAT1-like [Cucumis melo var. makuwa]	[more]
TYK04615.1	3.5e-21	63.64	transcription factor UPBEAT1-like [Cucumis melo var. makuwa]	[more]
PON40768.1	2.4e-09	50.00	transcription factor UPBEAT-like protein [Parasponia andersonii]	[more]

BLAST of Carg20402 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg20402 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UT08	1.7e-21	63.64	Transcription factor UPBEAT1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3BZU8	1.7e-21	63.64	Transcription factor UPBEAT1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A2P5AW87	1.1e-09	50.00	Transcription factor UPBEAT-like protein OS=Parasponia andersonii OX=3476 GN=Pan...	[more]
A0A6J5UGL2	1.5e-09	46.67	Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS23457 PE=4 S...	[more]
A0A314YX88	2.6e-09	46.67	Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_320...	[more]

BLAST of Carg20402 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G29370.1	4.9e-05	37.76	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR044660	Transcription factor IBH1-like	PANTHER	PTHR33124	TRANSCRIPTION FACTOR IBH1-LIKE 1	coord: 10..91
None	No IPR available	PANTHER	PTHR33124:SF70	SUBFAMILY NOT NAMED	coord: 10..91

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg20402-RA	Carg20402-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated