
Carg20402 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCATGGAAGCAATCAACGAGAAGAGCGGTTTTGCGATCGAGGTACGGTTCTAGGATCCTCAGAGCTCGTAGAATCCACAAAAATGGCGGAAAAGCGTGCTCATCAGACGTATCGGCGAGGCTTGAGGCGCTCCAGAGTCTCATTCCGACTCAGAACAACGGCGAAGGACATCACCGGAGATCGGAGGAGTTGTTTCAAGAGACGGCGGATTACATCGTGCTTTTGAAGAATCAGGTGTTCGTCTTGCAGAGGCTGATCGAGTTTTACGGATCCGATGAGAGAGAAAATGCCGTATCAGCGTAG ATGTCATGGAAGCAATCAACGAGAAGAGCGGTTTTGCGATCGAGGTACGGTTCTAGGATCCTCAGAGCTCGTAGAATCCACAAAAATGGCGGAAAAGCGTGCTCATCAGACGTATCGGCGAGGCTTGAGGCGCTCCAGAGTCTCATTCCGACTCAGAACAACGGCGAAGGACATCACCGGAGATCGGAGGAGTTGTTTCAAGAGACGGCGGATTACATCGTGTTCGTCTTGCAGAGGCTGATCGAGTTTTACGGATCCGATGAGAGAGAAAATGCCGTATCAGCGTAG ATGTCATGGAAGCAATCAACGAGAAGAGCGGTTTTGCGATCGAGGTACGGTTCTAGGATCCTCAGAGCTCGTAGAATCCACAAAAATGGCGGAAAAGCGTGCTCATCAGACGTATCGGCGAGGCTTGAGGCGCTCCAGAGTCTCATTCCGACTCAGAACAACGGCGAAGGACATCACCGGAGATCGGAGGAGTTGTTTCAAGAGACGGCGGATTACATCGTGTTCGTCTTGCAGAGGCTGATCGAGTTTTACGGATCCGATGAGAGAGAAAATGCCGTATCAGCGTAG MSWKQSTRRAVLRSRYGSRILRARRIHKNGGKACSSDVSARLEALQSLIPTQNNGEGHHRRSEELFQETADYIVFVLQRLIEFYGSDERENAVSA Homology
BLAST of Carg20402 vs. NCBI nr
Match: KAG7036793.1 (hypothetical protein SDJN02_00413, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 188.0 bits (476), Expect = 3.9e-44 Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0
BLAST of Carg20402 vs. NCBI nr
Match: KAG6607102.1 (hypothetical protein SDJN03_00444, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 181.4 bits (459), Expect = 3.6e-42 Identity = 95/101 (94.06%), Postives = 95/101 (94.06%), Query Frame = 0
BLAST of Carg20402 vs. NCBI nr
Match: KAA0056655.1 (transcription factor UPBEAT1-like [Cucumis melo var. makuwa]) HSP 1 Score: 111.7 bits (278), Expect = 3.5e-21 Identity = 63/99 (63.64%), Postives = 79/99 (79.80%), Query Frame = 0
BLAST of Carg20402 vs. NCBI nr
Match: TYK04615.1 (transcription factor UPBEAT1-like [Cucumis melo var. makuwa]) HSP 1 Score: 111.7 bits (278), Expect = 3.5e-21 Identity = 63/99 (63.64%), Postives = 79/99 (79.80%), Query Frame = 0
BLAST of Carg20402 vs. NCBI nr
Match: PON40768.1 (transcription factor UPBEAT-like protein [Parasponia andersonii]) HSP 1 Score: 72.4 bits (176), Expect = 2.4e-09 Identity = 49/98 (50.00%), Postives = 61/98 (62.24%), Query Frame = 0
BLAST of Carg20402 vs. ExPASy TrEMBL
Match: A0A5A7UT08 (Transcription factor UPBEAT1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold288G001870 PE=4 SV=1) HSP 1 Score: 111.7 bits (278), Expect = 1.7e-21 Identity = 63/99 (63.64%), Postives = 79/99 (79.80%), Query Frame = 0
BLAST of Carg20402 vs. ExPASy TrEMBL
Match: A0A5D3BZU8 (Transcription factor UPBEAT1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold351G00200 PE=4 SV=1) HSP 1 Score: 111.7 bits (278), Expect = 1.7e-21 Identity = 63/99 (63.64%), Postives = 79/99 (79.80%), Query Frame = 0
BLAST of Carg20402 vs. ExPASy TrEMBL
Match: A0A2P5AW87 (Transcription factor UPBEAT-like protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_294590 PE=4 SV=1) HSP 1 Score: 72.4 bits (176), Expect = 1.1e-09 Identity = 49/98 (50.00%), Postives = 61/98 (62.24%), Query Frame = 0
BLAST of Carg20402 vs. ExPASy TrEMBL
Match: A0A6J5UGL2 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS23457 PE=4 SV=1) HSP 1 Score: 72.0 bits (175), Expect = 1.5e-09 Identity = 49/105 (46.67%), Postives = 64/105 (60.95%), Query Frame = 0
BLAST of Carg20402 vs. ExPASy TrEMBL
Match: A0A314YX88 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_32000 PE=4 SV=1) HSP 1 Score: 71.2 bits (173), Expect = 2.6e-09 Identity = 49/105 (46.67%), Postives = 63/105 (60.00%), Query Frame = 0
BLAST of Carg20402 vs. TAIR 10
Match: AT3G29370.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G39240.1); Has 16 Blast hits to 16 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 44.7 bits (104), Expect = 4.9e-05 Identity = 37/98 (37.76%), Postives = 49/98 (50.00%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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