Carg20211 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg20211
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	G-patch domain-containing protein
Location	Carg_Chr11: 390354 .. 392302 (+)
RNA-Seq Expression	Carg20211
Synteny	Carg20211

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACATGGCCGAAAACTGGGTTGGATTTTGAACAGTATAAAAAGCGCGGGGATAGAACAAGCCCGCCAAAGAGAATGGAGCGCGCGACAAAGTCCGGTTCCGAGGAATTGCAGGAGAGTCATTGCTCGTTCGTTTGGGATGAGAAGTCTCGGCTATACTTCCATTCCAGGTTTCTTTAACTATTCTCTCATCTATTGATTTTGCTTTGCTGACTTTTCATTGCCAAATCATCGAACATTTGTACAACAATCTTTTGGAGAAGGAAACTTGCTATTTCTGAAGTTACAGATGATTTGGAAGATAATTGTTAAGATACAGGATCGACACGAACGTTTTAAGATATCCTTATGGAAAATGTTTGATTGAGGAGTAATCTTATTGTTCTACAGCTTGAAATCACAATTAATTCGTAGTAATTTTGTTGTATAATATATAACAACTTAATGTACTACCTAAAAACTTATATCGTATATCGCATTGTTAGATGATAAGTGTACCGGTACCTTCACAGGATTTCTTCTATCCTCTGTGAAATTTTTCATACTGTTAGTTTGTTATTTCTTTCTAGAAGGATGTTGCCGAATTTCAACAACTCTGCTTCTAAGTTGCCATTTCAAGTGCATTTTCTACTGCAAATTGTTACTTACTTGCATTACTTCCAACAGCAGTGGATTTTATCTTGATCCTGTAGCCGATTGGTACTATAGCAGTCGAGATGGTTCTTATTACAAATTCGAAAATGGAAGCTATGTGCTTCTTCAGTCGAACGAGGTACTGTCAATTGGTTGTTTATATGAGCATACGCCTGCCGTAATCACTGTGGTCTTCTTTTGTTTTGATCTGAGATCACTCTAATTAATTTCTTGCTTTTTGGACATTGTAGCAGGTGAAGAATGTAAGATGTGTCGTGATATCCTGTTAAAGGCGAACCATGCAGATAAGTGTGTACTACCGGCAGCGAGGATCACTCTTCATTTGAGGCCAGTGGACTTGATGGTCTAAATGCAGAGGAACTGATGGAGACGGACTACCATTAGGTTAGTTATCAAAGCATTTTAACACTCTTCAGCCAATTATACTGCAGCTGCTTGTTTTCAATAGATTTCAAGTTTGGTCGTCGACGAAGAGCTGCTAATTATTTTATTGTTCTGGCCAATAGACCTAATTGATTACAGTTTCAAGTGAAGTTTCATATGCCTGGCTTGTTTTGGACCAGTACTGTGTATGCTTTCGATGATTGTTTAGATATTCCTCTTATCTTAATCCAGCCATTGATATTTATAAAACGCTTCCAGAGCCATTGGTTTTTAAATGTGAATATGCTTACTATTTTCGTCAAACTAGATGATTGGATTAGACTTTTCCTTTGTTAGATCCTCGACATATTCTGTATTTAAATTATATGTCAAGGCATGATAGATCTCTTTTTTGACAGCTGAACCAAAATCACTACTGTGCCCTACTACTTGCCAAGTTTAACCTATCTCAAACGGAAGATATTTCTAAGCTTCTAAAACTCCACTGCCATTTTCTGCAACACCGTTGATGTTGTTGCTTCCATGACTATGCTTACTTGCAAAAAATTTGTATAGTCGGCTGTGAATTCACATTTGACGACTCTCACTAAATGACGAATGGATAGTTATATGACATATGCTAAGGAAGCTTTATTTTTTTCATCAGCTCTTGATGCGGCCGATGTTGTCTTTTGTATTTAACTGACGAATATGTCCCATTTGTTTTTATTTTTAACTGGAGACACTGAGGTTGGCATTACTGTTCTTGAGCATAAGAATCATCCTACATCTTCAACAACTTATGATGCTAAAAACTGTCTGTCATCAAGTGTTTGTGTGCATTTTTATTATTATGATGAAACCAGAATGACTTTTGTTGTAGTTCAGGCTATGGTAACATAGAGGATAGAGGTGAATGTTACTACGATTAA

mRNA sequence

ATGACATGGCCGAAAACTGGGTTGGATTTTGAACAGTATAAAAAGCGCGGGGATAGAACAAGCCCGCCAAAGAGAATGGAGCGCGCGACAAAGTCCGGTTCCGAGGAATTGCAGGAGAGTCATTGCTCGTTCGTTTGGGATGAGAAGTCTCGGCTATACTTCCATTCCAGCAGTGGATTTTATCTTGATCCTGTAGCCGATTGGTACTATAGCAGTCGAGATGGTTCTTATTACAAATTCGAAAATGGAAGCTATGTGCTTCTTCAGTCGAACGAGAATGACTTTTGTTGTAGTTCAGGCTATGGTAACATAGAGGATAGAGGTGAATGTTACTACGATTAA

Coding sequence (CDS)

ATGACATGGCCGAAAACTGGGTTGGATTTTGAACAGTATAAAAAGCGCGGGGATAGAACAAGCCCGCCAAAGAGAATGGAGCGCGCGACAAAGTCCGGTTCCGAGGAATTGCAGGAGAGTCATTGCTCGTTCGTTTGGGATGAGAAGTCTCGGCTATACTTCCATTCCAGCAGTGGATTTTATCTTGATCCTGTAGCCGATTGGTACTATAGCAGTCGAGATGGTTCTTATTACAAATTCGAAAATGGAAGCTATGTGCTTCTTCAGTCGAACGAGAATGACTTTTGTTGTAGTTCAGGCTATGGTAACATAGAGGATAGAGGTGAATGTTACTACGATTAA

Protein sequence

MTWPKTGLDFEQYKKRGDRTSPPKRMERATKSGSEELQESHCSFVWDEKSRLYFHSSSGFYLDPVADWYYSSRDGSYYKFENGSYVLLQSNENDFCCSSGYGNIEDRGECYYD

Homology

[Close]

BLAST of Carg20211 vs. NCBI nr
Match: KAG7021437.1 (hypothetical protein SDJN02_15162, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 243.4 bits (620), Expect = 9.2e-61
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   MTWPKTGLDFEQYKKRGDRTSPPKRMERATKSGSEELQESHCSFVWDEKSRLYFHSSSGF 60
           MTWPKTGLDFEQYKKRGDRTSPPKRMERATKSGSEELQESHCSFVWDEKSRLYFHSSSGF
Sbjct: 1   MTWPKTGLDFEQYKKRGDRTSPPKRMERATKSGSEELQESHCSFVWDEKSRLYFHSSSGF 60

Query: 61  YLDPVADWYYSSRDGSYYKFENGSYVLLQSNENDFCCSSGYGNIEDRGECYYD 114
           YLDPVADWYYSSRDGSYYKFENGSYVLLQSNENDFCCSSGYGNIEDRGECYYD
Sbjct: 61  YLDPVADWYYSSRDGSYYKFENGSYVLLQSNENDFCCSSGYGNIEDRGECYYD 113

[Close]

BLAST of Carg20211 vs. NCBI nr
Match: KAG6587453.1 (hypothetical protein SDJN03_16018, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 140.6 bits (353), Expect = 8.4e-30
Identity = 66/67 (98.51%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 26 MERATKSGSEELQESHCSFVWDEKSRLYFHSSSGFYLDPVADWYYSSRDGSYYKFENGSY 85
          MERATKSGSEELQ+SHCSFVWDEKSRLYFHSSSGFYLDPVADWYYSSRDGSYYKFENGSY
Sbjct: 1  MERATKSGSEELQDSHCSFVWDEKSRLYFHSSSGFYLDPVADWYYSSRDGSYYKFENGSY 60

Query: 86 VLLQSNE 93
          VLLQSNE
Sbjct: 61 VLLQSNE 67

[Close]

BLAST of Carg20211 vs. NCBI nr
Match: KAA0057833.1 (D111/G-patch domain-containing protein, putative isoform 1 [Cucumis melo var. makuwa])

HSP 1 Score: 123.2 bits (308), Expect = 1.4e-24
Identity = 58/70 (82.86%), Postives = 62/70 (88.57%), Query Frame = 0


Query: 27 ERATKSGSEELQESHCSFVWDEKSRLYFHSSSGFYLDPVADWYYSSRDGSYYKFENGSYV 86
          E  TKSGSEELQ+S+CSFVWDE S+LYFHSSSGFY DPVA WYYSSRDGSYYKFENGSYV
Sbjct: 3  ENETKSGSEELQDSNCSFVWDENSQLYFHSSSGFYHDPVAGWYYSSRDGSYYKFENGSYV 62

Query: 87 LLQSNENDFC 97
          LLQ NE + C
Sbjct: 63 LLQLNEGEEC 72

[Close]

BLAST of Carg20211 vs. NCBI nr
Match: XP_008464535.1 (PREDICTED: uncharacterized protein LOC103502387 isoform X2 [Cucumis melo])

HSP 1 Score: 123.2 bits (308), Expect = 1.4e-24
Identity = 58/70 (82.86%), Postives = 62/70 (88.57%), Query Frame = 0


Query: 27 ERATKSGSEELQESHCSFVWDEKSRLYFHSSSGFYLDPVADWYYSSRDGSYYKFENGSYV 86
          E  TKSGSEELQ+S+CSFVWDE S+LYFHSSSGFY DPVA WYYSSRDGSYYKFENGSYV
Sbjct: 3  ENETKSGSEELQDSNCSFVWDENSQLYFHSSSGFYHDPVAGWYYSSRDGSYYKFENGSYV 62

Query: 87 LLQSNENDFC 97
          LLQ NE + C
Sbjct: 63 LLQLNEGEEC 72

[Close]

BLAST of Carg20211 vs. NCBI nr
Match: XP_022921822.1 (SUPPRESSOR OF ABI3-5 isoform X4 [Cucurbita moschata])

HSP 1 Score: 122.9 bits (307), Expect = 1.8e-24
Identity = 59/74 (79.73%), Postives = 62/74 (83.78%), Query Frame = 0


Query: 26  MERATKSGSEELQESHCSFVWDEKSRLYFHSSSGFYLDPVADWYYSSRDGSYYKFENGSY 85
           ME  T+SGSEELQ S CSFVWDE S+LYFHSSSGFY DPVA WYYSSRDGSYYKFENGSY
Sbjct: 1   MESETQSGSEELQNSRCSFVWDENSQLYFHSSSGFYHDPVAGWYYSSRDGSYYKFENGSY 60

Query: 86  VLLQSNENDFCCSS 100
           VLLQ NE D  C +
Sbjct: 61  VLLQMNEQDEECKT 74

[Close]

BLAST of Carg20211 vs. ExPASy TrEMBL
Match: A0A5A7UPP0 (D111/G-patch domain-containing protein, putative isoform 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G001200 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 6.7e-25
Identity = 58/70 (82.86%), Postives = 62/70 (88.57%), Query Frame = 0


Query: 27 ERATKSGSEELQESHCSFVWDEKSRLYFHSSSGFYLDPVADWYYSSRDGSYYKFENGSYV 86
          E  TKSGSEELQ+S+CSFVWDE S+LYFHSSSGFY DPVA WYYSSRDGSYYKFENGSYV
Sbjct: 3  ENETKSGSEELQDSNCSFVWDENSQLYFHSSSGFYHDPVAGWYYSSRDGSYYKFENGSYV 62

Query: 87 LLQSNENDFC 97
          LLQ NE + C
Sbjct: 63 LLQLNEGEEC 72

[Close]

BLAST of Carg20211 vs. ExPASy TrEMBL
Match: A0A1S3CLU7 (uncharacterized protein LOC103502387 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103502387 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 6.7e-25
Identity = 58/70 (82.86%), Postives = 62/70 (88.57%), Query Frame = 0


Query: 27 ERATKSGSEELQESHCSFVWDEKSRLYFHSSSGFYLDPVADWYYSSRDGSYYKFENGSYV 86
          E  TKSGSEELQ+S+CSFVWDE S+LYFHSSSGFY DPVA WYYSSRDGSYYKFENGSYV
Sbjct: 3  ENETKSGSEELQDSNCSFVWDENSQLYFHSSSGFYHDPVAGWYYSSRDGSYYKFENGSYV 62

Query: 87 LLQSNENDFC 97
          LLQ NE + C
Sbjct: 63 LLQLNEGEEC 72

[Close]

BLAST of Carg20211 vs. ExPASy TrEMBL
Match: A0A6J1E1M2 (uncharacterized protein LOC111429960 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111429960 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 8.8e-25
Identity = 59/74 (79.73%), Postives = 62/74 (83.78%), Query Frame = 0


Query: 26  MERATKSGSEELQESHCSFVWDEKSRLYFHSSSGFYLDPVADWYYSSRDGSYYKFENGSY 85
           ME  T+SGSEELQ S CSFVWDE S+LYFHSSSGFY DPVA WYYSSRDGSYYKFENGSY
Sbjct: 1   MESETQSGSEELQNSRCSFVWDENSQLYFHSSSGFYHDPVAGWYYSSRDGSYYKFENGSY 60

Query: 86  VLLQSNENDFCCSS 100
           VLLQ NE D  C +
Sbjct: 61  VLLQMNEQDEECKT 74

[Close]

BLAST of Carg20211 vs. ExPASy TrEMBL
Match: A0A6J1E1H5 (SUPPRESSOR OF ABI3-5 isoform X4 OS=Cucurbita moschata OX=3662 GN=LOC111429960 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 8.8e-25
Identity = 59/74 (79.73%), Postives = 62/74 (83.78%), Query Frame = 0


Query: 26  MERATKSGSEELQESHCSFVWDEKSRLYFHSSSGFYLDPVADWYYSSRDGSYYKFENGSY 85
           ME  T+SGSEELQ S CSFVWDE S+LYFHSSSGFY DPVA WYYSSRDGSYYKFENGSY
Sbjct: 1   MESETQSGSEELQNSRCSFVWDENSQLYFHSSSGFYHDPVAGWYYSSRDGSYYKFENGSY 60

Query: 86  VLLQSNENDFCCSS 100
           VLLQ NE D  C +
Sbjct: 61  VLLQMNEQDEECKT 74

[Close]

BLAST of Carg20211 vs. ExPASy TrEMBL
Match: A0A6J1E6V8 (uncharacterized protein LOC111429960 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111429960 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 8.8e-25
Identity = 58/71 (81.69%), Postives = 62/71 (87.32%), Query Frame = 0


Query: 26 MERATKSGSEELQESHCSFVWDEKSRLYFHSSSGFYLDPVADWYYSSRDGSYYKFENGSY 85
          ME  T+SGSEELQ S CSFVWDE S+LYFHSSSGFY DPVA WYYSSRDGSYYKFENGSY
Sbjct: 1  MESETQSGSEELQNSRCSFVWDENSQLYFHSSSGFYHDPVAGWYYSSRDGSYYKFENGSY 60

Query: 86 VLLQSNENDFC 97
          VLLQ NE++ C
Sbjct: 61 VLLQMNEDEEC 71

[Close]

BLAST of Carg20211 vs. TAIR 10
Match: AT4G34140.1 (D111/G-patch domain-containing protein )

HSP 1 Score: 72.4 bits (176), Expect = 2.6e-13
Identity = 35/61 (57.38%), Postives = 43/61 (70.49%), Query Frame = 0


Query: 35 EELQE--SHCSFVWDEKSRLYFHSSSGFYLDPVADWYYSSRDGSYYKFENGSYVLLQSNE 94
          +ELQE     S+VWD  ++LY H SSGFY DP A WYY S+DG YYK ENG YV L+ +E
Sbjct: 6  KELQEPKEEDSYVWDSDTQLYIHHSSGFYHDPNAGWYYCSKDGRYYKHENGEYVPLEYDE 65

[Close]

BLAST of Carg20211 vs. TAIR 10
Match: AT4G34140.2 (D111/G-patch domain-containing protein )

HSP 1 Score: 72.4 bits (176), Expect = 2.6e-13
Identity = 35/61 (57.38%), Postives = 43/61 (70.49%), Query Frame = 0


Query: 35 EELQE--SHCSFVWDEKSRLYFHSSSGFYLDPVADWYYSSRDGSYYKFENGSYVLLQSNE 94
          +ELQE     S+VWD  ++LY H SSGFY DP A WYY S+DG YYK ENG YV L+ +E
Sbjct: 6  KELQEPKEEDSYVWDSDTQLYIHHSSGFYHDPNAGWYYCSKDGRYYKHENGEYVPLEYDE 65

[Close]

BLAST of Carg20211 vs. TAIR 10
Match: AT4G34140.3 (D111/G-patch domain-containing protein )

HSP 1 Score: 72.4 bits (176), Expect = 2.6e-13
Identity = 35/61 (57.38%), Postives = 43/61 (70.49%), Query Frame = 0


Query: 35 EELQE--SHCSFVWDEKSRLYFHSSSGFYLDPVADWYYSSRDGSYYKFENGSYVLLQSNE 94
          +ELQE     S+VWD  ++LY H SSGFY DP A WYY S+DG YYK ENG YV L+ +E
Sbjct: 6  KELQEPKEEDSYVWDSDTQLYIHHSSGFYHDPNAGWYYCSKDGRYYKHENGEYVPLEYDE 65

The following BLAST results are available for this feature:

BLAST of Carg20211 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7021437.1	9.2e-61	100.00	hypothetical protein SDJN02_15162, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6587453.1	8.4e-30	98.51	hypothetical protein SDJN03_16018, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAA0057833.1	1.4e-24	82.86	D111/G-patch domain-containing protein, putative isoform 1 [Cucumis melo var. ma...	[more]
XP_008464535.1	1.4e-24	82.86	PREDICTED: uncharacterized protein LOC103502387 isoform X2 [Cucumis melo]	[more]
XP_022921822.1	1.8e-24	79.73	SUPPRESSOR OF ABI3-5 isoform X4 [Cucurbita moschata]	[more]

BLAST of Carg20211 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg20211 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UPP0	6.7e-25	82.86	D111/G-patch domain-containing protein, putative isoform 1 OS=Cucumis melo var. ...	[more]
A0A1S3CLU7	6.7e-25	82.86	uncharacterized protein LOC103502387 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A6J1E1M2	8.8e-25	79.73	uncharacterized protein LOC111429960 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1E1H5	8.8e-25	79.73	SUPPRESSOR OF ABI3-5 isoform X4 OS=Cucurbita moschata OX=3662 GN=LOC111429960 PE...	[more]
A0A6J1E6V8	8.8e-25	81.69	uncharacterized protein LOC111429960 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]

BLAST of Carg20211 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G34140.1	2.6e-13	57.38	D111/G-patch domain-containing protein	[more]
AT4G34140.2	2.6e-13	57.38	D111/G-patch domain-containing protein	[more]
AT4G34140.3	2.6e-13	57.38	D111/G-patch domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR041591	OCRE domain	PFAM	PF17780	OCRE	coord: 42..86 e-value: 3.2E-11 score: 43.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 9..36
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..36
None	No IPR available	PANTHER	PTHR13948	RNA-BINDING PROTEIN	coord: 34..95
None	No IPR available	PANTHER	PTHR13948:SF38	D111/G-PATCH DOMAIN-CONTAINING PROTEIN	coord: 34..95
None	No IPR available	CDD	cd16074	OCRE	coord: 43..84 e-value: 9.65135E-9 score: 45.7383

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg20211-RA	Carg20211-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0016491	oxidoreductase activity