Carg20136 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg20136
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	F-box domain-containing protein
Location	Carg_Chr14: 12248350 .. 12251076 (+)
RNA-Seq Expression	Carg20136
Synteny	Carg20136

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACTACGTTCCACTATAAATATTTTCGCCATCGTCAAATTCTCCGTCCCCAGTTCTCGACTCCAGCATACTCCGTTCGGAAGCAAGCTCGGTTAGGGATTGAATCCATGGGTTTGCACCTTCTTCCCATTGATGCTGCCTTGAAGATTGCTTCTTCGCTTCAGGTTCCAATGGAGTTTTGTGTGATTCTGTTTCCTTTTTTTTTTCTTACTGTAATAATGTCTGTGGATTAATTTATCTATCTCTCTGGAATTTGGGGATGTGATGCGAATCGGTACGAAGGCATCGGACATTTGTTCTTTGGGCTGTTGCTCGCGATTTTGTAAGCAACTCTGCGATTCCGATTACCTGTGGGAATCTCTCACTCGAGAAAGATGGCCTTATATCAATGTTGCTTCGTCTACTGGTTCTTCTTCATCAACTCTCGCACAATCGCCTATCTCCATGGTGCTATTTCCATTATCTTTATCTCTTCTTAATTTAGTAAATTGTTTCTCATATTGGATGGAAATTTGACTTGTTTAGTATATTTAGGTTTCTTGGAATCGATTGAGAGATTTGGAAGGTTCTTTTGTTATTTCCGCCTCTTAATTCAAGTGTAGCTAATGCGCCTTTGGAATTTCCCCTGCCCCTACCTGAAATGGTTTGATTATTTTGTGAAACGTACATTGGATATTTATCTAGAGTTGAACGTAAGTATCTGTTCTTCTAATTCATGAATGTTTAGGCCATATACAGACACTGTTCGATTGTAATGTATTTCCAATGAAAACTCGTAGGATATTAAATCTTAGCCTATTATTGTTTATGTTGATCCTTTGATGATCATTTCCATAATGGTGTTAAGGATCTTTGTTTTTGAAATCAATCCAGAGATTTGAAAGCTTGTTTTGTTCTTTCTTTGTCGCATTACAAATGTTGTTGAATTAGCTCCTTTGATGTTTCTCCTTCCCTATCTGAAATGATTGAACAGCTTAGGGAAACGTGTTAGGGATTTCAGGTTGATTTAGAACTTAAGTTCTGTTATTCTCATTCTTGAATTTAGTTGTTCTACGTGTTTTTTGATACCTTATTTGTTCTGTAGTTGAATGGGCCCTTTCGAATTTTCTCCATCCTTTCTGAAATGGTTGGTTTTCTTAGTGAAACATATATTGGATGTTTATCTTGAGTTGAACTATTGTTGGATATTTATCCGAGTCTTTGTTCTTATATACGTTATGAGATTTCTGTTCATTAACAAACAAATGAAACGTCTTCCAGGGATGGAAAAGCTTTTACATCCAGAGACATATCGAGATATCAAGACGAGCCCAAGCAGCGGTAAAGTTTATAGAACAATACTCTCCTTCTTCCCCAATTGAGGGTGGAGACTATCTCAGGACAATTGTAGGCTTGTGGGATTTGAAGCTTAGTTTTATAGATGCTCAAATGGTGCTCTTCAAACCTCACCTGAATGAGCTGCTGAACTTGGTTGGCTTACACTACTGTCAAAGTTGGCTTCAAGTTCCTGTATGTCCTGCTGCTTTTGCCATTTTAGTTCAATCATTTGTAGGTTTAAATCACATTTTGGTCGTGAACTTTTATACTCATTCCATTTCGATCCCTTAAATCTTCAAATGTTCTATTTTTGTAACAACCCACCGCTAGCTGATATTGTCTTCTTTGGGTTTTCCCCTTCGAGCTTTCCCTCAAAGTTTTTAAAGTGAGATCCTACATCGGTTGGAGAGGGGAACGAAAGATTATTTATAAGGTTGTGGAAACCTCTCCCTAGTAGACGCGTTTTAAAAATCTTGAGGGAAAGCTCGAAAGAGAGCTCAAAAACGACAATATCGAGAGAGCTAAAAAACGACAATATCAACTAACAGTGGGTGTGGTCTGTTACAGTTTTAGGGATTTAAACCGAAGAGCTTAGCAGTTAGGAAGTTTTTGAGTGATAAACTAAAAAGAGGTAAAAATGAAATACTGTATTATAGGAGAATTAGGATTCCTGCTTCTTTTGTATATGATGCGTCTGAAATTGTTGAGTTGATATCCAACTTGTGGCAGGGGAATGAAATCATAGAAGCACTTGAAAGATGCAAGATCTCAGAGAGGCAAGTAAGTGTGAAATGGTGGAAGCTGGGAAGATGGTTTTATGGCTTCCGTATGAGAGACGAGCAACAAACTCGTCGAGTCTCTCTAGCAGCACTCGTAGCAGAAGAAGGGGAAGACGTTCTCGAGGTGCTTAGCCGAGGCGCTGTTAACGAGGTGCTTCGAGTTCAGGTATCTGTAGGTGAGCCCTTTGCCAGTAACTGATCTCAGGAAAGCACATAAAAACACCCTTTGCATCTCCTAAGTAAGCATTCTGCAGCAATGATCTATGTGCTAATTAATAGTTGCTTCATATATTTCAAATAAATGCTTATAGATTTATGCCTGCAGATTCCCAAATGCTAAATACTTGTTGCCCATTCAGGTTTGATTTATAATTGGTATATTTTGTAAATTATTAGGAGCTTTTGGCTCCCCAGTATTGCGTTTCGGACAATCTTAATATCTTAGGTCACAGAGTACTAATAGTATAGTCCATAGCTACAACATTACTTTTCTATTTTGTTCGATTAAATCTTTAACATTCAAGTTTGTGCTATTTTATGTTCTATATTTTTAGAATGATCGAGTTCATGAATATGAATTTGTTATTTGAAAACTTTTTGTTTTCAAAATTTATGAACTAAATAATACAAATT

mRNA sequence

ACTACGTTCCACTATAAATATTTTCGCCATCGTCAAATTCTCCGTCCCCAGTTCTCGACTCCAGCATACTCCGTTCGGAAGCAAGCTCGGTTAGGGATTGAATCCATGGGTTTGCACCTTCTTCCCATTGATGCTGCCTTGAAGATTGCTTCTTCGCTTCAGGTTCCAATGGAGTTTTGTGTGATTCTGTTTCCTTTTTTTTTTCTTACTGTAATAATGTCTGTGGATTAATTTATCTATCTCTCTGGAATTTGGGGATGTGATGCGAATCGGTACGAAGGCATCGGACATTTGTTCTTTGGGCTGTTGCTCGCGATTTTGTAAGCAACTCTGCGATTCCGATTACCTGTGGGAATCTCTCACTCGAGAAAGATGGCCTTATATCAATGTTGCTTCGTCTACTGGTTCTTCTTCATCAACTCTCGCACAATCGCCTATCTCCATGGGATGGAAAAGCTTTTACATCCAGAGACATATCGAGATATCAAGACGAGCCCAAGCAGCGGTAAAGTTTATAGAACAATACTCTCCTTCTTCCCCAATTGAGGGTGGAGACTATCTCAGGACAATTGTAGGCTTGTGGGATTTGAAGCTTAGTTTTATAGATGCTCAAATGGTGCTCTTCAAACCTCACCTGAATGAGCTGCTGAACTTGGTTGGCTTACACTACTGTCAAAGTTGGCTTCAAGTTCCTGGGAATGAAATCATAGAAGCACTTGAAAGATGCAAGATCTCAGAGAGGCAAGTAAGTGTGAAATGGTGGAAGCTGGGAAGATGGTTTTATGGCTTCCGTATGAGAGACGAGCAACAAACTCGTCGAGTCTCTCTAGCAGCACTCGTAGCAGAAGAAGGGGAAGACGTTCTCGAGGTGCTTAGCCGAGGCGCTGTTAACGAGGTGCTTCGAGTTCAGGTATCTGTAGGTGAGCCCTTTGCCAGTAACTGATCTCAGGAAAGCACATAAAAACACCCTTTGCATCTCCTAAGTAAGCATTCTGCAGCAATGATCTATGTGCTAATTAATAGTTGCTTCATATATTTCAAATAAATGCTTATAGATTTATGCCTGCAGATTCCCAAATGCTAAATACTTGTTGCCCATTCAGGTTTGATTTATAATTGGTATATTTTGTAAATTATTAGGAGCTTTTGGCTCCCCAGTATTGCGTTTCGGACAATCTTAATATCTTAGGTCACAGAGTACTAATAGTATAGTCCATAGCTACAACATTACTTTTCTATTTTGTTCGATTAAATCTTTAACATTCAAGTTTGTGCTATTTTATGTTCTATATTTTTAGAATGATCGAGTTCATGAATATGAATTTGTTATTTGAAAACTTTTTGTTTTCAAAATTTATGAACTAAATAATACAAATT

Coding sequence (CDS)

ATGCGAATCGGTACGAAGGCATCGGACATTTGTTCTTTGGGCTGTTGCTCGCGATTTTGTAAGCAACTCTGCGATTCCGATTACCTGTGGGAATCTCTCACTCGAGAAAGATGGCCTTATATCAATGTTGCTTCGTCTACTGGTTCTTCTTCATCAACTCTCGCACAATCGCCTATCTCCATGGGATGGAAAAGCTTTTACATCCAGAGACATATCGAGATATCAAGACGAGCCCAAGCAGCGGTAAAGTTTATAGAACAATACTCTCCTTCTTCCCCAATTGAGGGTGGAGACTATCTCAGGACAATTGTAGGCTTGTGGGATTTGAAGCTTAGTTTTATAGATGCTCAAATGGTGCTCTTCAAACCTCACCTGAATGAGCTGCTGAACTTGGTTGGCTTACACTACTGTCAAAGTTGGCTTCAAGTTCCTGGGAATGAAATCATAGAAGCACTTGAAAGATGCAAGATCTCAGAGAGGCAAGTAAGTGTGAAATGGTGGAAGCTGGGAAGATGGTTTTATGGCTTCCGTATGAGAGACGAGCAACAAACTCGTCGAGTCTCTCTAGCAGCACTCGTAGCAGAAGAAGGGGAAGACGTTCTCGAGGTGCTTAGCCGAGGCGCTGTTAACGAGGTGCTTCGAGTTCAGGTATCTGTAGGTGAGCCCTTTGCCAGTAACTGA

Protein sequence

MRIGTKASDICSLGCCSRFCKQLCDSDYLWESLTRERWPYINVASSTGSSSSTLAQSPISMGWKSFYIQRHIEISRRAQAAVKFIEQYSPSSPIEGGDYLRTIVGLWDLKLSFIDAQMVLFKPHLNELLNLVGLHYCQSWLQVPGNEIIEALERCKISERQVSVKWWKLGRWFYGFRMRDEQQTRRVSLAALVAEEGEDVLEVLSRGAVNEVLRVQVSVGEPFASN

Homology

[Close]

BLAST of Carg20136 vs. NCBI nr
Match: XP_022979916.1 (uncharacterized protein LOC111479465 isoform X2 [Cucurbita maxima] >XP_023526477.1 uncharacterized protein LOC111789966 isoform X2 [Cucurbita pepo subsp. pepo] >KAG7018640.1 hypothetical protein SDJN02_20510 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 461.8 bits (1187), Expect = 3.3e-126
Identity = 226/226 (100.00%), Postives = 226/226 (100.00%), Query Frame = 0


Query: 1   MRIGTKASDICSLGCCSRFCKQLCDSDYLWESLTRERWPYINVASSTGSSSSTLAQSPIS 60
           MRIGTKASDICSLGCCSRFCKQLCDSDYLWESLTRERWPYINVASSTGSSSSTLAQSPIS
Sbjct: 1   MRIGTKASDICSLGCCSRFCKQLCDSDYLWESLTRERWPYINVASSTGSSSSTLAQSPIS 60

Query: 61  MGWKSFYIQRHIEISRRAQAAVKFIEQYSPSSPIEGGDYLRTIVGLWDLKLSFIDAQMVL 120
           MGWKSFYIQRHIEISRRAQAAVKFIEQYSPSSPIEGGDYLRTIVGLWDLKLSFIDAQMVL
Sbjct: 61  MGWKSFYIQRHIEISRRAQAAVKFIEQYSPSSPIEGGDYLRTIVGLWDLKLSFIDAQMVL 120

Query: 121 FKPHLNELLNLVGLHYCQSWLQVPGNEIIEALERCKISERQVSVKWWKLGRWFYGFRMRD 180
           FKPHLNELLNLVGLHYCQSWLQVPGNEIIEALERCKISERQVSVKWWKLGRWFYGFRMRD
Sbjct: 121 FKPHLNELLNLVGLHYCQSWLQVPGNEIIEALERCKISERQVSVKWWKLGRWFYGFRMRD 180

Query: 181 EQQTRRVSLAALVAEEGEDVLEVLSRGAVNEVLRVQVSVGEPFASN 227
           EQQTRRVSLAALVAEEGEDVLEVLSRGAVNEVLRVQVSVGEPFASN
Sbjct: 181 EQQTRRVSLAALVAEEGEDVLEVLSRGAVNEVLRVQVSVGEPFASN 226

[Close]

BLAST of Carg20136 vs. NCBI nr
Match: XP_022979915.1 (uncharacterized protein LOC111479465 isoform X1 [Cucurbita maxima] >XP_023526476.1 uncharacterized protein LOC111789966 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 450.3 bits (1157), Expect = 9.9e-123
Identity = 220/221 (99.55%), Postives = 221/221 (100.00%), Query Frame = 0


Query: 6   KASDICSLGCCSRFCKQLCDSDYLWESLTRERWPYINVASSTGSSSSTLAQSPISMGWKS 65
           +ASDICSLGCCSRFCKQLCDSDYLWESLTRERWPYINVASSTGSSSSTLAQSPISMGWKS
Sbjct: 19  QASDICSLGCCSRFCKQLCDSDYLWESLTRERWPYINVASSTGSSSSTLAQSPISMGWKS 78

Query: 66  FYIQRHIEISRRAQAAVKFIEQYSPSSPIEGGDYLRTIVGLWDLKLSFIDAQMVLFKPHL 125
           FYIQRHIEISRRAQAAVKFIEQYSPSSPIEGGDYLRTIVGLWDLKLSFIDAQMVLFKPHL
Sbjct: 79  FYIQRHIEISRRAQAAVKFIEQYSPSSPIEGGDYLRTIVGLWDLKLSFIDAQMVLFKPHL 138

Query: 126 NELLNLVGLHYCQSWLQVPGNEIIEALERCKISERQVSVKWWKLGRWFYGFRMRDEQQTR 185
           NELLNLVGLHYCQSWLQVPGNEIIEALERCKISERQVSVKWWKLGRWFYGFRMRDEQQTR
Sbjct: 139 NELLNLVGLHYCQSWLQVPGNEIIEALERCKISERQVSVKWWKLGRWFYGFRMRDEQQTR 198

Query: 186 RVSLAALVAEEGEDVLEVLSRGAVNEVLRVQVSVGEPFASN 227
           RVSLAALVAEEGEDVLEVLSRGAVNEVLRVQVSVGEPFASN
Sbjct: 199 RVSLAALVAEEGEDVLEVLSRGAVNEVLRVQVSVGEPFASN 239

[Close]

BLAST of Carg20136 vs. NCBI nr
Match: KAG6582240.1 (CASP-like protein 1D1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 450.3 bits (1157), Expect = 9.9e-123
Identity = 220/221 (99.55%), Postives = 221/221 (100.00%), Query Frame = 0


Query: 6   KASDICSLGCCSRFCKQLCDSDYLWESLTRERWPYINVASSTGSSSSTLAQSPISMGWKS 65
           +ASDICSLGCCSRFCKQLCDSDYLWESLTRERWPYINVASSTGSSSSTLAQSPISMGWKS
Sbjct: 216 QASDICSLGCCSRFCKQLCDSDYLWESLTRERWPYINVASSTGSSSSTLAQSPISMGWKS 275

Query: 66  FYIQRHIEISRRAQAAVKFIEQYSPSSPIEGGDYLRTIVGLWDLKLSFIDAQMVLFKPHL 125
           FYIQRHIEISRRAQAAVKFIEQYSPSSPIEGGDYLRTIVGLWDLKLSFIDAQMVLFKPHL
Sbjct: 276 FYIQRHIEISRRAQAAVKFIEQYSPSSPIEGGDYLRTIVGLWDLKLSFIDAQMVLFKPHL 335

Query: 126 NELLNLVGLHYCQSWLQVPGNEIIEALERCKISERQVSVKWWKLGRWFYGFRMRDEQQTR 185
           NELLNLVGLHYCQSWLQVPGNEIIEALERCKISERQVSVKWWKLGRWFYGFRMRDEQQTR
Sbjct: 336 NELLNLVGLHYCQSWLQVPGNEIIEALERCKISERQVSVKWWKLGRWFYGFRMRDEQQTR 395

Query: 186 RVSLAALVAEEGEDVLEVLSRGAVNEVLRVQVSVGEPFASN 227
           RVSLAALVAEEGEDVLEVLSRGAVNEVLRVQVSVGEPFASN
Sbjct: 396 RVSLAALVAEEGEDVLEVLSRGAVNEVLRVQVSVGEPFASN 436

[Close]

BLAST of Carg20136 vs. NCBI nr
Match: XP_022955428.1 (uncharacterized protein LOC111457456 isoform X2 [Cucurbita moschata])

HSP 1 Score: 449.9 bits (1156), Expect = 1.3e-122
Identity = 222/226 (98.23%), Postives = 223/226 (98.67%), Query Frame = 0


Query: 1   MRIGTKASDICSLGCCSRFCKQLCDSDYLWESLTRERWPYINVASSTGSSSSTLAQSPIS 60
           MRIGTKASDICSLGCCSRFCKQLCDSDYLWESLTRERWPYINVAS   SSSSTLAQSPIS
Sbjct: 1   MRIGTKASDICSLGCCSRFCKQLCDSDYLWESLTRERWPYINVASV--SSSSTLAQSPIS 60

Query: 61  MGWKSFYIQRHIEISRRAQAAVKFIEQYSPSSPIEGGDYLRTIVGLWDLKLSFIDAQMVL 120
           MGWKSFYIQRHIEISRRAQAAVKFIEQYSPSSPIEGGDYLRTIVGLWDLKLSFIDAQMVL
Sbjct: 61  MGWKSFYIQRHIEISRRAQAAVKFIEQYSPSSPIEGGDYLRTIVGLWDLKLSFIDAQMVL 120

Query: 121 FKPHLNELLNLVGLHYCQSWLQVPGNEIIEALERCKISERQVSVKWWKLGRWFYGFRMRD 180
           FKPHLNELLNLVGLHYCQSWLQVPGNEIIEALERCKISERQVSVKWWKLGRWFYGFRMRD
Sbjct: 121 FKPHLNELLNLVGLHYCQSWLQVPGNEIIEALERCKISERQVSVKWWKLGRWFYGFRMRD 180

Query: 181 EQQTRRVSLAALVAEEGEDVLEVLSRGAVNEVLRVQVSVGEPFASN 227
           EQQTRRVSLAAL+AEEGEDVLEVLSRGAVNEVLRVQVSVGEPFASN
Sbjct: 181 EQQTRRVSLAALIAEEGEDVLEVLSRGAVNEVLRVQVSVGEPFASN 224

[Close]

BLAST of Carg20136 vs. NCBI nr
Match: XP_022955427.1 (uncharacterized protein LOC111457456 isoform X1 [Cucurbita moschata])

HSP 1 Score: 438.3 bits (1126), Expect = 3.9e-119
Identity = 216/221 (97.74%), Postives = 218/221 (98.64%), Query Frame = 0


Query: 6   KASDICSLGCCSRFCKQLCDSDYLWESLTRERWPYINVASSTGSSSSTLAQSPISMGWKS 65
           +ASDICSLGCCSRFCKQLCDSDYLWESLTRERWPYINVAS   SSSSTLAQSPISMGWKS
Sbjct: 19  QASDICSLGCCSRFCKQLCDSDYLWESLTRERWPYINVASV--SSSSTLAQSPISMGWKS 78

Query: 66  FYIQRHIEISRRAQAAVKFIEQYSPSSPIEGGDYLRTIVGLWDLKLSFIDAQMVLFKPHL 125
           FYIQRHIEISRRAQAAVKFIEQYSPSSPIEGGDYLRTIVGLWDLKLSFIDAQMVLFKPHL
Sbjct: 79  FYIQRHIEISRRAQAAVKFIEQYSPSSPIEGGDYLRTIVGLWDLKLSFIDAQMVLFKPHL 138

Query: 126 NELLNLVGLHYCQSWLQVPGNEIIEALERCKISERQVSVKWWKLGRWFYGFRMRDEQQTR 185
           NELLNLVGLHYCQSWLQVPGNEIIEALERCKISERQVSVKWWKLGRWFYGFRMRDEQQTR
Sbjct: 139 NELLNLVGLHYCQSWLQVPGNEIIEALERCKISERQVSVKWWKLGRWFYGFRMRDEQQTR 198

Query: 186 RVSLAALVAEEGEDVLEVLSRGAVNEVLRVQVSVGEPFASN 227
           RVSLAAL+AEEGEDVLEVLSRGAVNEVLRVQVSVGEPFASN
Sbjct: 199 RVSLAALIAEEGEDVLEVLSRGAVNEVLRVQVSVGEPFASN 237

[Close]

BLAST of Carg20136 vs. ExPASy TrEMBL
Match: A0A6J1IS41 (uncharacterized protein LOC111479465 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111479465 PE=4 SV=1)

HSP 1 Score: 461.8 bits (1187), Expect = 1.6e-126
Identity = 226/226 (100.00%), Postives = 226/226 (100.00%), Query Frame = 0


Query: 1   MRIGTKASDICSLGCCSRFCKQLCDSDYLWESLTRERWPYINVASSTGSSSSTLAQSPIS 60
           MRIGTKASDICSLGCCSRFCKQLCDSDYLWESLTRERWPYINVASSTGSSSSTLAQSPIS
Sbjct: 1   MRIGTKASDICSLGCCSRFCKQLCDSDYLWESLTRERWPYINVASSTGSSSSTLAQSPIS 60

Query: 61  MGWKSFYIQRHIEISRRAQAAVKFIEQYSPSSPIEGGDYLRTIVGLWDLKLSFIDAQMVL 120
           MGWKSFYIQRHIEISRRAQAAVKFIEQYSPSSPIEGGDYLRTIVGLWDLKLSFIDAQMVL
Sbjct: 61  MGWKSFYIQRHIEISRRAQAAVKFIEQYSPSSPIEGGDYLRTIVGLWDLKLSFIDAQMVL 120

Query: 121 FKPHLNELLNLVGLHYCQSWLQVPGNEIIEALERCKISERQVSVKWWKLGRWFYGFRMRD 180
           FKPHLNELLNLVGLHYCQSWLQVPGNEIIEALERCKISERQVSVKWWKLGRWFYGFRMRD
Sbjct: 121 FKPHLNELLNLVGLHYCQSWLQVPGNEIIEALERCKISERQVSVKWWKLGRWFYGFRMRD 180

Query: 181 EQQTRRVSLAALVAEEGEDVLEVLSRGAVNEVLRVQVSVGEPFASN 227
           EQQTRRVSLAALVAEEGEDVLEVLSRGAVNEVLRVQVSVGEPFASN
Sbjct: 181 EQQTRRVSLAALVAEEGEDVLEVLSRGAVNEVLRVQVSVGEPFASN 226

[Close]

BLAST of Carg20136 vs. ExPASy TrEMBL
Match: A0A6J1IUP6 (uncharacterized protein LOC111479465 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111479465 PE=4 SV=1)

HSP 1 Score: 450.3 bits (1157), Expect = 4.8e-123
Identity = 220/221 (99.55%), Postives = 221/221 (100.00%), Query Frame = 0


Query: 6   KASDICSLGCCSRFCKQLCDSDYLWESLTRERWPYINVASSTGSSSSTLAQSPISMGWKS 65
           +ASDICSLGCCSRFCKQLCDSDYLWESLTRERWPYINVASSTGSSSSTLAQSPISMGWKS
Sbjct: 19  QASDICSLGCCSRFCKQLCDSDYLWESLTRERWPYINVASSTGSSSSTLAQSPISMGWKS 78

Query: 66  FYIQRHIEISRRAQAAVKFIEQYSPSSPIEGGDYLRTIVGLWDLKLSFIDAQMVLFKPHL 125
           FYIQRHIEISRRAQAAVKFIEQYSPSSPIEGGDYLRTIVGLWDLKLSFIDAQMVLFKPHL
Sbjct: 79  FYIQRHIEISRRAQAAVKFIEQYSPSSPIEGGDYLRTIVGLWDLKLSFIDAQMVLFKPHL 138

Query: 126 NELLNLVGLHYCQSWLQVPGNEIIEALERCKISERQVSVKWWKLGRWFYGFRMRDEQQTR 185
           NELLNLVGLHYCQSWLQVPGNEIIEALERCKISERQVSVKWWKLGRWFYGFRMRDEQQTR
Sbjct: 139 NELLNLVGLHYCQSWLQVPGNEIIEALERCKISERQVSVKWWKLGRWFYGFRMRDEQQTR 198

Query: 186 RVSLAALVAEEGEDVLEVLSRGAVNEVLRVQVSVGEPFASN 227
           RVSLAALVAEEGEDVLEVLSRGAVNEVLRVQVSVGEPFASN
Sbjct: 199 RVSLAALVAEEGEDVLEVLSRGAVNEVLRVQVSVGEPFASN 239

[Close]

BLAST of Carg20136 vs. ExPASy TrEMBL
Match: A0A6J1GTX1 (uncharacterized protein LOC111457456 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111457456 PE=4 SV=1)

HSP 1 Score: 449.9 bits (1156), Expect = 6.3e-123
Identity = 222/226 (98.23%), Postives = 223/226 (98.67%), Query Frame = 0


Query: 1   MRIGTKASDICSLGCCSRFCKQLCDSDYLWESLTRERWPYINVASSTGSSSSTLAQSPIS 60
           MRIGTKASDICSLGCCSRFCKQLCDSDYLWESLTRERWPYINVAS   SSSSTLAQSPIS
Sbjct: 1   MRIGTKASDICSLGCCSRFCKQLCDSDYLWESLTRERWPYINVASV--SSSSTLAQSPIS 60

Query: 61  MGWKSFYIQRHIEISRRAQAAVKFIEQYSPSSPIEGGDYLRTIVGLWDLKLSFIDAQMVL 120
           MGWKSFYIQRHIEISRRAQAAVKFIEQYSPSSPIEGGDYLRTIVGLWDLKLSFIDAQMVL
Sbjct: 61  MGWKSFYIQRHIEISRRAQAAVKFIEQYSPSSPIEGGDYLRTIVGLWDLKLSFIDAQMVL 120

Query: 121 FKPHLNELLNLVGLHYCQSWLQVPGNEIIEALERCKISERQVSVKWWKLGRWFYGFRMRD 180
           FKPHLNELLNLVGLHYCQSWLQVPGNEIIEALERCKISERQVSVKWWKLGRWFYGFRMRD
Sbjct: 121 FKPHLNELLNLVGLHYCQSWLQVPGNEIIEALERCKISERQVSVKWWKLGRWFYGFRMRD 180

Query: 181 EQQTRRVSLAALVAEEGEDVLEVLSRGAVNEVLRVQVSVGEPFASN 227
           EQQTRRVSLAAL+AEEGEDVLEVLSRGAVNEVLRVQVSVGEPFASN
Sbjct: 181 EQQTRRVSLAALIAEEGEDVLEVLSRGAVNEVLRVQVSVGEPFASN 224

[Close]

BLAST of Carg20136 vs. ExPASy TrEMBL
Match: A0A6J1GTL4 (uncharacterized protein LOC111457456 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111457456 PE=4 SV=1)

HSP 1 Score: 438.3 bits (1126), Expect = 1.9e-119
Identity = 216/221 (97.74%), Postives = 218/221 (98.64%), Query Frame = 0


Query: 6   KASDICSLGCCSRFCKQLCDSDYLWESLTRERWPYINVASSTGSSSSTLAQSPISMGWKS 65
           +ASDICSLGCCSRFCKQLCDSDYLWESLTRERWPYINVAS   SSSSTLAQSPISMGWKS
Sbjct: 19  QASDICSLGCCSRFCKQLCDSDYLWESLTRERWPYINVASV--SSSSTLAQSPISMGWKS 78

Query: 66  FYIQRHIEISRRAQAAVKFIEQYSPSSPIEGGDYLRTIVGLWDLKLSFIDAQMVLFKPHL 125
           FYIQRHIEISRRAQAAVKFIEQYSPSSPIEGGDYLRTIVGLWDLKLSFIDAQMVLFKPHL
Sbjct: 79  FYIQRHIEISRRAQAAVKFIEQYSPSSPIEGGDYLRTIVGLWDLKLSFIDAQMVLFKPHL 138

Query: 126 NELLNLVGLHYCQSWLQVPGNEIIEALERCKISERQVSVKWWKLGRWFYGFRMRDEQQTR 185
           NELLNLVGLHYCQSWLQVPGNEIIEALERCKISERQVSVKWWKLGRWFYGFRMRDEQQTR
Sbjct: 139 NELLNLVGLHYCQSWLQVPGNEIIEALERCKISERQVSVKWWKLGRWFYGFRMRDEQQTR 198

Query: 186 RVSLAALVAEEGEDVLEVLSRGAVNEVLRVQVSVGEPFASN 227
           RVSLAAL+AEEGEDVLEVLSRGAVNEVLRVQVSVGEPFASN
Sbjct: 199 RVSLAALIAEEGEDVLEVLSRGAVNEVLRVQVSVGEPFASN 237

[Close]

BLAST of Carg20136 vs. ExPASy TrEMBL
Match: A0A5A7U795 (F-box-like domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold209G00440 PE=4 SV=1)

HSP 1 Score: 382.5 bits (981), Expect = 1.2e-102
Identity = 184/221 (83.26%), Postives = 200/221 (90.50%), Query Frame = 0


Query: 6   KASDICSLGCCSRFCKQLCDSDYLWESLTRERWPYINVASSTGSSSSTLAQSPISMGWKS 65
           + S+ICSLGCCSRFC+QLCDSDYLWESL RERWPYIN     GSSSSTLAQSPISMGWKS
Sbjct: 19  QVSEICSLGCCSRFCRQLCDSDYLWESLARERWPYIN-----GSSSSTLAQSPISMGWKS 78

Query: 66  FYIQRHIEISRRAQAAVKFIEQYSPSSPIEGGDYLRTIVGLWDLKLSFIDAQMVLFKPHL 125
           FYIQRHIEI  RAQAAVKF+EQ SPS+PIEGGDYLRTI GLWDLKLSF+DAQMVLFKP L
Sbjct: 79  FYIQRHIEILGRAQAAVKFVEQCSPSTPIEGGDYLRTIGGLWDLKLSFVDAQMVLFKPQL 138

Query: 126 NELLNLVGLHYCQSWLQVPGNEIIEALERCKISERQVSVKWWKLGRWFYGFRMRDEQQTR 185
           NELLNLVGLHYC+ WLQVP N+I+EAL+RCKI+ER + VKWWKLGRWFYGFRMRDEQQTR
Sbjct: 139 NELLNLVGLHYCRIWLQVPANQILEALQRCKIAERHICVKWWKLGRWFYGFRMRDEQQTR 198

Query: 186 RVSLAALVAEEGEDVLEVLSRGAVNEVLRVQVSVGEPFASN 227
           RVSLA L+ EEGEDVL VLSRGAV+EVLRVQVSVG+ FA +
Sbjct: 199 RVSLAELMTEEGEDVLGVLSRGAVHEVLRVQVSVGDSFAGH 234

[Close]

BLAST of Carg20136 vs. TAIR 10
Match: AT4G15563.1 (unknown protein; Has 36 Blast hits to 36 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 121.7 bits (304), Expect = 7.5e-28
Identity = 61/149 (40.94%), Postives = 93/149 (62.42%), Query Frame = 0


Query: 70  RHIEISRRAQAAVKFIEQYSPSSPIEGGDYLRTIVGLWDLKLSFIDAQMVLFKPHLNELL 129
           +H E++ RA   +K++ +   +  +E G YL  +  +  ++  F D ++  FKP+L+ LL
Sbjct: 2   QHKEMASRASEVIKYVTKSPATLSLEAGIYLHAVETMSSMRFGFQDVELFFFKPNLSVLL 61

Query: 130 NLVGLHYCQSWLQVPGNEIIEALERCKISERQVSVKWWKLGRWFYGFRMRDEQQTRRVSL 189
           NL+GL YC   L+    ++++ L +C ISE+ V VKW  LGRW  G RMRD+  +R+VSL
Sbjct: 62  NLIGLIYCIQHLKPRREQVVDVLRQCGISEQLVWVKWLTLGRWSGGSRMRDDIVSRQVSL 121

Query: 190 AALVAEEGEDVLEVLSRGAVNEVLRVQVS 219
             +V  + E VL VL RG V+EVLRV +S
Sbjct: 122 VDVVTGKEETVLRVLQRGVVHEVLRVCIS 150

The following BLAST results are available for this feature:

BLAST of Carg20136 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022979916.1	3.3e-126	100.00	uncharacterized protein LOC111479465 isoform X2 [Cucurbita maxima] >XP_023526477...	[more]
XP_022979915.1	9.9e-123	99.55	uncharacterized protein LOC111479465 isoform X1 [Cucurbita maxima] >XP_023526476...	[more]
KAG6582240.1	9.9e-123	99.55	CASP-like protein 1D1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022955428.1	1.3e-122	98.23	uncharacterized protein LOC111457456 isoform X2 [Cucurbita moschata]	[more]
XP_022955427.1	3.9e-119	97.74	uncharacterized protein LOC111457456 isoform X1 [Cucurbita moschata]	[more]

BLAST of Carg20136 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg20136 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IS41	1.6e-126	100.00	uncharacterized protein LOC111479465 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1IUP6	4.8e-123	99.55	uncharacterized protein LOC111479465 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1GTX1	6.3e-123	98.23	uncharacterized protein LOC111457456 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1GTL4	1.9e-119	97.74	uncharacterized protein LOC111457456 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A5A7U795	1.2e-102	83.26	F-box-like domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]

BLAST of Carg20136 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G15563.1	7.5e-28	40.94	unknown protein; Has 36 Blast hits to 36 proteins in 12 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR039588	F-box only protein 4	PANTHER	PTHR16008	F-BOX ONLY PROTEIN 4	coord: 7..221
None	No IPR available	PANTHER	PTHR16008:SF4	F-BOX ONLY PROTEIN 4	coord: 7..221
IPR036047	F-box-like domain superfamily	SUPERFAMILY	81383	F-box domain	coord: 7..72

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg20136-RA	Carg20136-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000209	protein polyubiquitination
biological_process	GO:0031146	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
cellular_component	GO:0019005	SCF ubiquitin ligase complex
molecular_function	GO:0005515	protein binding