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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. ATGGAAGGCGGTTTGAAAAAGAGAAAGGGGAGACGGAAAACCGAGTCTAATCAACCGAACACGTGGGCGGTGGAGATTGGTAGACCCAATCATCTGCTGGCTGAGCCGGAGCCGACGTGGTCGCACGTAGCCGGCCACAATCTTTTGGTAAGGGGACACGTGTTGGTACCCTTTGATTGTATCGTCAACGCTATTCAACTCCGTCGCGCCGGAGGCGGTTTCCGAAAGTGGACTTCTGCGGACAGCAGCTCCCTTGTCAACGTCACTGCGAGTTCCACCAAGTAAAGATTATTTTATCCGCAAATTCCATCGAGTTTGCTCCTAATCAATCGTGCCGCCCAATTGTTTCTAATTGCACAATTCACTCAACACTAATCAATTTGCTTTATCCGCACCTGAATTGACTACTCAATTTGTTATTCCCATTCCATTTCTTTTGGATTTTTTTCTTTTTCTAATCTCCGTGGAGCAAGCGGATCACCTACTGCAACGAATACTGGCTTCAAAAGCACTTCTCCCACAGAGAAACAGAGAGAGAAGAGACACCCAGGGTTAAGGCTCCGATCATCAACAGTGCTCTTTTGGTCGTCTTCTTCCCCGAGGTTATTTTGTTTCCCTATTTTTGGTTTGGGGACGCGATGGGGGGTACATACATTTTATTTTCTTTTTTGGATGGTTCTTTATAGATTACGAGCAGTTATTGATTTAACGTATGGGCCTTCATCGGTGTTGTTATGATTATTGCTCTTTTAATTCTGAAGAAACATAATTGATTGTGTTCTTCTTGTTGCTGCTAGTTGTTTCCTGTTGCGCTTGGACGTTTTTATGTAATATGTATTTGCCGAAGCAGTATATGGTCAATCATGGCAGCTTGTGATCAAGACTCGAGAGAATTTGAATTTGAGGGATCTAATTTTATAAGAAAATTTCATGAACATGCATCATAGAGCTATCTGGTTTGTAAGGATATAAATTTTGGGAACAGGTAGGATTATCAGCGTCAAGAAATTTATAAACTTAATCCGCATCCCTGCAATCCTTTGCGCGGAACTTTCTTTTATAGGTTGGCGAGTGCGGGAAGAATAATTTGGTGAACCTAAGTAAATTACCAGAATATAGTGATCATTTGGGGTTCTTGCGCCTTCTACTGTCATAGGGATGGCTTCAGAATTCTCAATCTATTTCGTATCATGAGACATTTGTTTTCTTTTGTATTGCACAGTTTCATCATTGGCAGATTTTTCTCTATTTTTGGTGTTTTATCCTTGTTCTTCATCAACATGAAATGATCCAATTATATCATGAAACAATAACCATTATTGTATTTCTCTATATAAGCAGGTGGAAAATAATAATGCCTGA mRNA sequence ATGGAAGGCGGTTTGAAAAAGAGAAAGGGGAGACGGAAAACCGAGTCTAATCAACCGAACACGTGGGCGGTGGAGATTGGTAGACCCAATCATCTGCTGGCTGAGCCGGAGCCGACGTGGTCGCACGTAGCCGGCCACAATCTTTTGGTAAGGGGACACGTGTTGGTACCCTTTGATTGTATCGTCAACGCTATTCAACTCCGTCGCGCCGGAGGCGGTTTCCGAAAGTGGACTTCTGCGGACAGCAGCTCCCTTGTCAACGTCACTGCGAGTTCCACCAACAAGCGGATCACCTACTGCAACGAATACTGGCTTCAAAAGCACTTCTCCCACAGAGAAACAGAGAGAGAAGAGACACCCAGGGTTAAGGCTCCGATCATCAACAGTGCTCTTTTGGTCGTCTTCTTCCCCGAGGTGGAAAATAATAATGCCTGA Coding sequence (CDS) ATGGAAGGCGGTTTGAAAAAGAGAAAGGGGAGACGGAAAACCGAGTCTAATCAACCGAACACGTGGGCGGTGGAGATTGGTAGACCCAATCATCTGCTGGCTGAGCCGGAGCCGACGTGGTCGCACGTAGCCGGCCACAATCTTTTGGTAAGGGGACACGTGTTGGTACCCTTTGATTGTATCGTCAACGCTATTCAACTCCGTCGCGCCGGAGGCGGTTTCCGAAAGTGGACTTCTGCGGACAGCAGCTCCCTTGTCAACGTCACTGCGAGTTCCACCAACAAGCGGATCACCTACTGCAACGAATACTGGCTTCAAAAGCACTTCTCCCACAGAGAAACAGAGAGAGAAGAGACACCCAGGGTTAAGGCTCCGATCATCAACAGTGCTCTTTTGGTCGTCTTCTTCCCCGAGGTGGAAAATAATAATGCCTGA Protein sequence MEGGLKKRKGRRKTESNQPNTWAVEIGRPNHLLAEPEPTWSHVAGHNLLVRGHVLVPFDCIVNAIQLRRAGGGFRKWTSADSSSLVNVTASSTNKRITYCNEYWLQKHFSHRETEREETPRVKAPIINSALLVVFFPEVENNNA
Homology
BLAST of Carg19333 vs. NCBI nr
Match: KAG7034782.1 (hypothetical protein SDJN02_04514, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 300.4 bits (768), Expect = 8.1e-78 Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0
Query: 1 MEGGLKKRKGRRKTESNQPNTWAVEIGRPNHLLAEPEPTWSHVAGHNLLVRGHVLVPFDC 60
MEGGLKKRKGRRKTESNQPNTWAVEIGRPNHLLAEPEPTWSHVAGHNLLVRGHVLVPFDC
Sbjct: 1 MEGGLKKRKGRRKTESNQPNTWAVEIGRPNHLLAEPEPTWSHVAGHNLLVRGHVLVPFDC 60
Query: 61 IVNAIQLRRAGGGFRKWTSADSSSLVNVTASSTNKRITYCNEYWLQKHFSHRETEREETP 120
IVNAIQLRRAGGGFRKWTSADSSSLVNVTASSTNKRITYCNEYWLQKHFSHRETEREETP
Sbjct: 61 IVNAIQLRRAGGGFRKWTSADSSSLVNVTASSTNKRITYCNEYWLQKHFSHRETEREETP 120
Query: 121 RVKAPIINSALLVVFFPEVENNNA 145
RVKAPIINSALLVVFFPEVENNNA
Sbjct: 121 RVKAPIINSALLVVFFPEVENNNA 144
BLAST of Carg19333 vs. NCBI nr
Match: KAG6581494.1 (hypothetical protein SDJN03_21496, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 243.0 bits (619), Expect = 1.5e-60 Identity = 124/144 (86.11%), Postives = 125/144 (86.81%), Query Frame = 0
Query: 1 MEGGLKKRKGRRKTESNQPNTWAVEIGRPNHLLAEPEPTWSHVAGHNLLVRGHVLVPFDC 60
MEGGLKKRKGRRKTESNQPNTWAVEIGRPNHLLAEPEPTWSHVAGHNLLVRGHVLV FDC
Sbjct: 1 MEGGLKKRKGRRKTESNQPNTWAVEIGRPNHLLAEPEPTWSHVAGHNLLVRGHVLVSFDC 60
Query: 61 IVNAIQLRRAGGGFRKWTSADSSSLVNVTASSTNKRITYCNEYWLQKHFSHRETEREETP 120
IVNAIQLRRAGGGFRKWTSADSSSLVNVTASST +ETEREETP
Sbjct: 61 IVNAIQLRRAGGGFRKWTSADSSSLVNVTASST------------------KETEREETP 120
Query: 121 RVKAPIINSALLVVFFPEVENNNA 145
RVKAPIINSALLVVFFPEVENNNA
Sbjct: 121 RVKAPIINSALLVVFFPEVENNNA 126
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KAG7034782.1 | 8.1e-78 | 100.00 | hypothetical protein SDJN02_04514, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
| KAG6581494.1 | 1.5e-60 | 86.11 | hypothetical protein SDJN03_21496, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| Match Name | E-value | Identity | Description | |
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| Match Name | E-value | Identity | Description | |
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| Match Name | E-value | Identity | Description | |
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InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..20 |
Relationships
The following mRNA feature(s) are a part of this gene:
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