Carg19333 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg19333
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr03: 10066781 .. 10068142 (-)
RNA-Seq ExpressionCarg19333
SyntenyCarg19333
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGGCGGTTTGAAAAAGAGAAAGGGGAGACGGAAAACCGAGTCTAATCAACCGAACACGTGGGCGGTGGAGATTGGTAGACCCAATCATCTGCTGGCTGAGCCGGAGCCGACGTGGTCGCACGTAGCCGGCCACAATCTTTTGGTAAGGGGACACGTGTTGGTACCCTTTGATTGTATCGTCAACGCTATTCAACTCCGTCGCGCCGGAGGCGGTTTCCGAAAGTGGACTTCTGCGGACAGCAGCTCCCTTGTCAACGTCACTGCGAGTTCCACCAAGTAAAGATTATTTTATCCGCAAATTCCATCGAGTTTGCTCCTAATCAATCGTGCCGCCCAATTGTTTCTAATTGCACAATTCACTCAACACTAATCAATTTGCTTTATCCGCACCTGAATTGACTACTCAATTTGTTATTCCCATTCCATTTCTTTTGGATTTTTTTCTTTTTCTAATCTCCGTGGAGCAAGCGGATCACCTACTGCAACGAATACTGGCTTCAAAAGCACTTCTCCCACAGAGAAACAGAGAGAGAAGAGACACCCAGGGTTAAGGCTCCGATCATCAACAGTGCTCTTTTGGTCGTCTTCTTCCCCGAGGTTATTTTGTTTCCCTATTTTTGGTTTGGGGACGCGATGGGGGGTACATACATTTTATTTTCTTTTTTGGATGGTTCTTTATAGATTACGAGCAGTTATTGATTTAACGTATGGGCCTTCATCGGTGTTGTTATGATTATTGCTCTTTTAATTCTGAAGAAACATAATTGATTGTGTTCTTCTTGTTGCTGCTAGTTGTTTCCTGTTGCGCTTGGACGTTTTTATGTAATATGTATTTGCCGAAGCAGTATATGGTCAATCATGGCAGCTTGTGATCAAGACTCGAGAGAATTTGAATTTGAGGGATCTAATTTTATAAGAAAATTTCATGAACATGCATCATAGAGCTATCTGGTTTGTAAGGATATAAATTTTGGGAACAGGTAGGATTATCAGCGTCAAGAAATTTATAAACTTAATCCGCATCCCTGCAATCCTTTGCGCGGAACTTTCTTTTATAGGTTGGCGAGTGCGGGAAGAATAATTTGGTGAACCTAAGTAAATTACCAGAATATAGTGATCATTTGGGGTTCTTGCGCCTTCTACTGTCATAGGGATGGCTTCAGAATTCTCAATCTATTTCGTATCATGAGACATTTGTTTTCTTTTGTATTGCACAGTTTCATCATTGGCAGATTTTTCTCTATTTTTGGTGTTTTATCCTTGTTCTTCATCAACATGAAATGATCCAATTATATCATGAAACAATAACCATTATTGTATTTCTCTATATAAGCAGGTGGAAAATAATAATGCCTGA

mRNA sequence

ATGGAAGGCGGTTTGAAAAAGAGAAAGGGGAGACGGAAAACCGAGTCTAATCAACCGAACACGTGGGCGGTGGAGATTGGTAGACCCAATCATCTGCTGGCTGAGCCGGAGCCGACGTGGTCGCACGTAGCCGGCCACAATCTTTTGGTAAGGGGACACGTGTTGGTACCCTTTGATTGTATCGTCAACGCTATTCAACTCCGTCGCGCCGGAGGCGGTTTCCGAAAGTGGACTTCTGCGGACAGCAGCTCCCTTGTCAACGTCACTGCGAGTTCCACCAACAAGCGGATCACCTACTGCAACGAATACTGGCTTCAAAAGCACTTCTCCCACAGAGAAACAGAGAGAGAAGAGACACCCAGGGTTAAGGCTCCGATCATCAACAGTGCTCTTTTGGTCGTCTTCTTCCCCGAGGTGGAAAATAATAATGCCTGA

Coding sequence (CDS)

ATGGAAGGCGGTTTGAAAAAGAGAAAGGGGAGACGGAAAACCGAGTCTAATCAACCGAACACGTGGGCGGTGGAGATTGGTAGACCCAATCATCTGCTGGCTGAGCCGGAGCCGACGTGGTCGCACGTAGCCGGCCACAATCTTTTGGTAAGGGGACACGTGTTGGTACCCTTTGATTGTATCGTCAACGCTATTCAACTCCGTCGCGCCGGAGGCGGTTTCCGAAAGTGGACTTCTGCGGACAGCAGCTCCCTTGTCAACGTCACTGCGAGTTCCACCAACAAGCGGATCACCTACTGCAACGAATACTGGCTTCAAAAGCACTTCTCCCACAGAGAAACAGAGAGAGAAGAGACACCCAGGGTTAAGGCTCCGATCATCAACAGTGCTCTTTTGGTCGTCTTCTTCCCCGAGGTGGAAAATAATAATGCCTGA

Protein sequence

MEGGLKKRKGRRKTESNQPNTWAVEIGRPNHLLAEPEPTWSHVAGHNLLVRGHVLVPFDCIVNAIQLRRAGGGFRKWTSADSSSLVNVTASSTNKRITYCNEYWLQKHFSHRETEREETPRVKAPIINSALLVVFFPEVENNNA
Homology
[Close]
BLAST of Carg19333 vs. NCBI nr
Match: KAG7034782.1 (hypothetical protein SDJN02_04514, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 300.4 bits (768), Expect = 8.1e-78
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0 

Query: 1   MEGGLKKRKGRRKTESNQPNTWAVEIGRPNHLLAEPEPTWSHVAGHNLLVRGHVLVPFDC 60
           MEGGLKKRKGRRKTESNQPNTWAVEIGRPNHLLAEPEPTWSHVAGHNLLVRGHVLVPFDC
Sbjct: 1   MEGGLKKRKGRRKTESNQPNTWAVEIGRPNHLLAEPEPTWSHVAGHNLLVRGHVLVPFDC 60

Query: 61  IVNAIQLRRAGGGFRKWTSADSSSLVNVTASSTNKRITYCNEYWLQKHFSHRETEREETP 120
           IVNAIQLRRAGGGFRKWTSADSSSLVNVTASSTNKRITYCNEYWLQKHFSHRETEREETP
Sbjct: 61  IVNAIQLRRAGGGFRKWTSADSSSLVNVTASSTNKRITYCNEYWLQKHFSHRETEREETP 120

Query: 121 RVKAPIINSALLVVFFPEVENNNA 145
           RVKAPIINSALLVVFFPEVENNNA
Sbjct: 121 RVKAPIINSALLVVFFPEVENNNA 144

[Close]
BLAST of Carg19333 vs. NCBI nr
Match: KAG6581494.1 (hypothetical protein SDJN03_21496, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 243.0 bits (619), Expect = 1.5e-60
Identity = 124/144 (86.11%), Postives = 125/144 (86.81%), Query Frame = 0 

Query: 1   MEGGLKKRKGRRKTESNQPNTWAVEIGRPNHLLAEPEPTWSHVAGHNLLVRGHVLVPFDC 60
           MEGGLKKRKGRRKTESNQPNTWAVEIGRPNHLLAEPEPTWSHVAGHNLLVRGHVLV FDC
Sbjct: 1   MEGGLKKRKGRRKTESNQPNTWAVEIGRPNHLLAEPEPTWSHVAGHNLLVRGHVLVSFDC 60

Query: 61  IVNAIQLRRAGGGFRKWTSADSSSLVNVTASSTNKRITYCNEYWLQKHFSHRETEREETP 120
           IVNAIQLRRAGGGFRKWTSADSSSLVNVTASST                  +ETEREETP
Sbjct: 61  IVNAIQLRRAGGGFRKWTSADSSSLVNVTASST------------------KETEREETP 120

Query: 121 RVKAPIINSALLVVFFPEVENNNA 145
           RVKAPIINSALLVVFFPEVENNNA
Sbjct: 121 RVKAPIINSALLVVFFPEVENNNA 126

The following BLAST results are available for this feature:
BLAST of Carg19333 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7034782.18.1e-78100.00hypothetical protein SDJN02_04514, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6581494.11.5e-6086.11hypothetical protein SDJN03_21496, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Carg19333 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg19333 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg19333 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg19333-RACarg19333-RAmRNA