Carg18735 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg18735
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	photosynthetic NDH subunit of subcomplex B 1, chloroplastic
Location	Carg_Chr17: 7185209 .. 7189273 (+)
RNA-Seq Expression	Carg18735
Synteny	Carg18735

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTACTTCTTCTCTTCCCACCAAATCCCTCCCGCCATTTTTGCCGGCATCAAGCTTTCCACCTTCTTCTCCTTCAACCCACTTCACTAAGCCGCCATTCCTAGCCCCACCTGACATTTCTCTCTCCACCTCTTCCTCATCGCCCTCTAAACTTCATATTCCCAGTTGTGCCAAGAAGAATCCCTGGCTCGACCCTTTCGACGATGGCGATGATCCGGACATGGAATACGGCTCTCTCTTCGCCGATGGGAAGCAGGAAGAGGACCCTCGCCCACCGGACAATCCGAACAATCCGTATGGGTTCTTGAAATTTCCTCAGGGTTATATGGTGGAAGTTGCTTCTCTAGGTCTTAAACTCCGGGGAGATGTACGGCGGTGCTGCTGCGTGATTTCCGGCGGGGTCTATGAAAACCTACTCTTCTTTCCGGCCATTCAATTGCTCAAGGATCGGTACCCGGGTGTTCAAATCGACGTGGTGGCTTCGGCGAGGGGTAAACAGACTTATGAATTGAATAAGAATGTGCGATGGTCTAATGTCTATGATCCGGATGATTATTTTCCTGAACCGGCCGATTACACTGACATGGTTGGATTGCTCAAGGTTGGTTCATTTTCTCGCCAATAATTGACCTAGAAATTGATAGAACAATATTGCTAGTGATTCTACCATGTATGAAAGACTTCAAATATTGGATCCCACTTCGATTTAGAACTTTGATGATACTTAGAAACTTTGATAGCCATATTAGTGATTTGTTAGGAGATCTCTTAGAAAAATATTTAGTGCCCATTTGAAACAATGGTTTCATTGTTGTTGCAGGGTAGATATTATGATATGGTGTTGTCAACAAAGCTAGCAGGGATTGGGCATGCGGCGTTTTTGTTCATGACAACAGCCAGAGACAGAGTTAGCTACATTTACCCTGATGTGAATGCTGCTGGAGCAGGGCTTTTCTTGTCTCAAACATTTAAACCAGATAGCTCTAATCTTTCCGAGGGAGGGTTCAACATGTGAGAATATTTTATACTTTTGTTTTGAATCTGTACAAAAGTTTTCATATAAGCTTTTGAGTTTAGTATTAGTATGACATAGCATTGGAGTGGAAGCTACTTTATGTAACGGCCCAAACTCACCGCTAGTAGCTATTGTCCTCTTTGAGTTTTCCCTCAAGGTTTTTAAAACGCGTTTGTTAGGGGAGAGGTTTCCACACCCTTATAAAGAATATTTCATTCTCCTCCCTAACTGATGTGAGATCTCACAATCCACCTCCCTTCGGGGCCCAGCGTCCTCGTTGGCACTTTTTCCCTTCTCCAATCGATGTAGGACCCTCCAATCCACACCCCCTTCGGGGCTAGTGTCCTTGCTTGCACACCGCCTCGTGTCCATCCCCTTTCAGGACTCAGCTTCCTTGCTGGCACACAGCTTGGTGTCTGGCTTTGATATCATTTGTAACAGCCCAAGCCACCGCTAGTAGATATTACCTCTTTGGGTTTTCCCTTCTCGGGTCTCCCCTCAAAGTTTTTAAAACACGTCTACTAGGGAGAGGTTTCCACACTTTTATCAAAAATGTTTTGTTCTCTTCCCCAATCGATGTGGGATCTCACACTTTATCTGTTTAAGTTCTTAGCAATCTCGTTTTCTTTTCAGTTTATACTGATAGTCACTCGTTGCGTTCTTGTGCTTATTTCCTAAGCCACAAGGAGGATGTCAAGAATGTATATAAAAGATTACATACTCCATAACTCATCAATATAAGTTATTACTGTATAGTATTAGTTTGATATAGGGTGCAGTTTTTGCCACTAAATGAGTGAAGTATGGCTTTTATGAGAGGACACTAAGTAATGTTCTACGTGAAAGCTGAAGAACAAAATAGAAATAGCAAGCTCAAACTTCTACTTTTTTGATGCCTTGAAGGCTGATTTTCATGATTTAGGTATCATCAAATGGTTGATTGGTTAGGGAGACCATTTCGTAGCGTTCCCAGGCATCCCGTTCCTCCGCTCAAAGTTTCGATTTCAAGAAAATTGAAGGAGATTGTAAAGGAAAAGTATAATCAAGCAGGTGTTGAGAAAGGAAAATATATTGTGATTCATGGAATAGAATCAGATTCAAAAGCCTCAATGCAGTCCAAAGGTGATACTGATAGCTTGCTACCCATTCAAGCCTGGGCTGAAATAGCCAATGCTATAAGGTAGGTATTATGTCAATATCTTGCTTTATCAGAAAAAAAATGATGAACTATAGGCAACAGTAACATAATGCAGCTTTTTCTTTCATTATTTTCTGATGATAACACTTGTTGAATCTAAACACAGGGGATTCAAGCCAGTTTTTGTCATTCCGCACGAAAAAGAAAGGGAAAACGTCGAGGAGGAGGTCGGAGATAACGCAAGCATCGTATTTATCACTACCCCAGGACAGGTACTCATAACTATCCATCTTTCTCTTTTGAGTATAGAAGAGTGAACTGTGAAAAGGATGAAAAAACAGTTTTAAGTAAGAAAGAAAGGATTGAAGAAAGGGAAATTAATGTTTTGAAGAAGTTGATAAATGTGAGATCTCACATTGGCTGGAGAGGGGAACGAAGCATTCCTTATAAGGGTGTGGAAACGTCTCCCTAGTAGACGTGTTTTAAAACTGTGAGGGAAAGCCCAAAGAGGATAATATGTACTAGCGGTGGACTTGGACTGTTACAAATGACAAATGGTATCAGAGCCAAGCATCGAACGGTGTGCTAGTGAGAACGTTGGGCCCCGCAAGGGGTGGATTGTGAGATCCGACATTGGTTGGAGAGGGGAATGAAGCATTCCTTATAAGGGTGTGGAAACCTCTCCTTAGTAGACGTGTTTTAAAAACCTTGAGGGAAAGCCTAAAGAGGATAATATCGGTTCGTGGTGGGCTTGGGCTATTACAAATGGTATCAAAGCTAGGCACCGAACGGTGTGCCAGCAAGGATGCTAGGCCCTGCTGGGGGTGGGTTGTGAGATCTCACATTAGTTGGAGAGGGGAACGAAACATTCCTTGTAAAGGTGTGGAAGCCTCTCTCTAGTAGACATGTTTTAAAGGTGTGGAAGCCTCTCTCTAGTACGAAACATTCTTTGTAAAGGTGTGGAAGCCTCTCTCTAGTAGACATGTTTTAAAACTTTGAGAGAAATCCTAAAAAATGATAATATTTGCTAGCGGTGGGTTTTGGGCTATTACAAATGGTACCAGAGCCAAGCACTGAACGGTGTGTCATCGAAGATGCTGGGCTCCGTAGGGAGTGGATTGTGAGATCCCACCTTGGTTGGAGAAGCACTCCTTATAAAAGTGTGGAAACCTCTCTCTAGTAGAGACGCGTTTTAAAACCTTGAGAGAAAGTCCAAGATAATATCTTCTAGCTGTGAGCTTGGGCTGTTAGAATAAAAGTGATACTTAAAAGCACACCATGCTTAACTTCAATCTGCAGTTAGCTGCTCTCATTAACGACTCGGCTGGTGTAATAGCTACCAACACAGCTGCGATCCAACTCGCCATTGCTCGCGAAAAACCAAGGTCTTGATCTGTTTCTCCTTCCCAGAAACTCAATAGTTTGCTTACTGATCTTAAAATCTCCCATTTGCTAGTAGTATGAAAAGAACAGTGCTTGATATGCATCTATAATTCCAATGTGTTTGCAGCATTGCATTGTTTTGCTCTGAAGAGAAAGCAAAACTATTTGTTCCGGACGCCGAAGCAAAGAGATGCATCGCAGTTTCATCGACAACGGGACGACTAATCGACATCGATATGGGCACAGTTAAAAGGGCGATTCAGAGCTTTGAAGTGCCTCTAGCTCTTGCTTTTCAGTGACATTACAGATTTTCTTACCCACTTTGTGCTTATCATCATGATAGTTACCGTCAGTTGTATATCAAAGCATTGGCAATGAAGAGGGTAATTGTATATTTTCTGTTTGGTCTTAACTCTTTTGAAAGCTCCCTTTCCTTACTCTTACTCTATCTCAGCTTTCGGTCCAAATTTCATTTGAACCTCGATCCGTTAGAGCTGGTGAGAAAAATCTAAAGTTCGTTCTTTCTA

mRNA sequence

ATGGCTACTTCTTCTCTTCCCACCAAATCCCTCCCGCCATTTTTGCCGGCATCAAGCTTTCCACCTTCTTCTCCTTCAACCCACTTCACTAAGCCGCCATTCCTAGCCCCACCTGACATTTCTCTCTCCACCTCTTCCTCATCGCCCTCTAAACTTCATATTCCCAGTTGTGCCAAGAAGAATCCCTGGCTCGACCCTTTCGACGATGGCGATGATCCGGACATGGAATACGGCTCTCTCTTCGCCGATGGGAAGCAGGAAGAGGACCCTCGCCCACCGGACAATCCGAACAATCCGTATGGGTTCTTGAAATTTCCTCAGGGTTATATGGTGGAAGTTGCTTCTCTAGGTCTTAAACTCCGGGGAGATGTACGGCGGTGCTGCTGCGTGATTTCCGGCGGGGTCTATGAAAACCTACTCTTCTTTCCGGCCATTCAATTGCTCAAGGATCGGTACCCGGGTGTTCAAATCGACGTGGTGGCTTCGGCGAGGGGTAAACAGACTTATGAATTGAATAAGAATGTGCGATGGTCTAATGTCTATGATCCGGATGATTATTTTCCTGAACCGGCCGATTACACTGACATGGTTGGATTGCTCAAGGGTAGATATTATGATATGGTGTTGTCAACAAAGCTAGCAGGGATTGGGCATGCGGCGTTTTTGTTCATGACAACAGCCAGAGACAGAGTTAGCTACATTTACCCTGATGTGAATGCTGCTGGAGCAGGGCTTTTCTTGTCTCAAACATTTAAACCAGATAGCTCTAATCTTTCCGAGGGAGGGTTCAACATGTATCATCAAATGGTTGATTGGTTAGGGAGACCATTTCGTAGCGTTCCCAGGCATCCCGTTCCTCCGCTCAAAGTTTCGATTTCAAGAAAATTGAAGGAGATTGTAAAGGAAAAGTATAATCAAGCAGGTGTTGAGAAAGGAAAATATATTGTGATTCATGGAATAGAATCAGATTCAAAAGCCTCAATGCAGTCCAAAGGTGATACTGATAGCTTGCTACCCATTCAAGCCTGGGCTGAAATAGCCAATGCTATAAGGGGATTCAAGCCAGTTTTTGTCATTCCGCACGAAAAAGAAAGGGAAAACGTCGAGGAGGAGGTCGGAGATAACGCAAGCATCGTATTTATCACTACCCCAGGACAGTTAGCTGCTCTCATTAACGACTCGGCTGGTGTAATAGCTACCAACACAGCTGCGATCCAACTCGCCATTGCTCGCGAAAAACCAAGCATTGCATTGTTTTGCTCTGAAGAGAAAGCAAAACTATTTGTTCCGGACGCCGAAGCAAAGAGATGCATCGCAGTTTCATCGACAACGGGACGACTAATCGACATCGATATGGGCACAGTTAAAAGGGCGATTCAGAGCTTTGAAGTGCCTCTAGCTCTTGCTTTTCAGTGACATTACAGATTTTCTTACCCACTTTGTGCTTATCATCATGATAGTTACCGTCAGTTGTATATCAAAGCATTGGCAATGAAGAGGGTAATTGTATATTTTCTGTTTGGTCTTAACTCTTTTGAAAGCTCCCTTTCCTTACTCTTACTCTATCTCAGCTTTCGGTCCAAATTTCATTTGAACCTCGATCCGTTAGAGCTGGTGAGAAAAATCTAAAGTTCGTTCTTTCTA

Coding sequence (CDS)

ATGGCTACTTCTTCTCTTCCCACCAAATCCCTCCCGCCATTTTTGCCGGCATCAAGCTTTCCACCTTCTTCTCCTTCAACCCACTTCACTAAGCCGCCATTCCTAGCCCCACCTGACATTTCTCTCTCCACCTCTTCCTCATCGCCCTCTAAACTTCATATTCCCAGTTGTGCCAAGAAGAATCCCTGGCTCGACCCTTTCGACGATGGCGATGATCCGGACATGGAATACGGCTCTCTCTTCGCCGATGGGAAGCAGGAAGAGGACCCTCGCCCACCGGACAATCCGAACAATCCGTATGGGTTCTTGAAATTTCCTCAGGGTTATATGGTGGAAGTTGCTTCTCTAGGTCTTAAACTCCGGGGAGATGTACGGCGGTGCTGCTGCGTGATTTCCGGCGGGGTCTATGAAAACCTACTCTTCTTTCCGGCCATTCAATTGCTCAAGGATCGGTACCCGGGTGTTCAAATCGACGTGGTGGCTTCGGCGAGGGGTAAACAGACTTATGAATTGAATAAGAATGTGCGATGGTCTAATGTCTATGATCCGGATGATTATTTTCCTGAACCGGCCGATTACACTGACATGGTTGGATTGCTCAAGGGTAGATATTATGATATGGTGTTGTCAACAAAGCTAGCAGGGATTGGGCATGCGGCGTTTTTGTTCATGACAACAGCCAGAGACAGAGTTAGCTACATTTACCCTGATGTGAATGCTGCTGGAGCAGGGCTTTTCTTGTCTCAAACATTTAAACCAGATAGCTCTAATCTTTCCGAGGGAGGGTTCAACATGTATCATCAAATGGTTGATTGGTTAGGGAGACCATTTCGTAGCGTTCCCAGGCATCCCGTTCCTCCGCTCAAAGTTTCGATTTCAAGAAAATTGAAGGAGATTGTAAAGGAAAAGTATAATCAAGCAGGTGTTGAGAAAGGAAAATATATTGTGATTCATGGAATAGAATCAGATTCAAAAGCCTCAATGCAGTCCAAAGGTGATACTGATAGCTTGCTACCCATTCAAGCCTGGGCTGAAATAGCCAATGCTATAAGGGGATTCAAGCCAGTTTTTGTCATTCCGCACGAAAAAGAAAGGGAAAACGTCGAGGAGGAGGTCGGAGATAACGCAAGCATCGTATTTATCACTACCCCAGGACAGTTAGCTGCTCTCATTAACGACTCGGCTGGTGTAATAGCTACCAACACAGCTGCGATCCAACTCGCCATTGCTCGCGAAAAACCAAGCATTGCATTGTTTTGCTCTGAAGAGAAAGCAAAACTATTTGTTCCGGACGCCGAAGCAAAGAGATGCATCGCAGTTTCATCGACAACGGGACGACTAATCGACATCGATATGGGCACAGTTAAAAGGGCGATTCAGAGCTTTGAAGTGCCTCTAGCTCTTGCTTTTCAGTGA

Protein sequence

MATSSLPTKSLPPFLPASSFPPSSPSTHFTKPPFLAPPDISLSTSSSSPSKLHIPSCAKKNPWLDPFDDGDDPDMEYGSLFADGKQEEDPRPPDNPNNPYGFLKFPQGYMVEVASLGLKLRGDVRRCCCVISGGVYENLLFFPAIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNVYDPDDYFPEPADYTDMVGLLKGRYYDMVLSTKLAGIGHAAFLFMTTARDRVSYIYPDVNAAGAGLFLSQTFKPDSSNLSEGGFNMYHQMVDWLGRPFRSVPRHPVPPLKVSISRKLKEIVKEKYNQAGVEKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIANAIRGFKPVFVIPHEKERENVEEEVGDNASIVFITTPGQLAALINDSAGVIATNTAAIQLAIAREKPSIALFCSEEKAKLFVPDAEAKRCIAVSSTTGRLIDIDMGTVKRAIQSFEVPLALAFQ

Homology

[Close]

BLAST of Carg18735 vs. NCBI nr
Match: KAG6575629.1 (Photosynthetic NDH subunit of subcomplex B 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014183.1 Photosynthetic NDH subunit of subcomplex B 1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 942.6 bits (2435), Expect = 1.3e-270
Identity = 471/471 (100.00%), Postives = 471/471 (100.00%), Query Frame = 0


Query: 1   MATSSLPTKSLPPFLPASSFPPSSPSTHFTKPPFLAPPDISLSTSSSSPSKLHIPSCAKK 60
           MATSSLPTKSLPPFLPASSFPPSSPSTHFTKPPFLAPPDISLSTSSSSPSKLHIPSCAKK
Sbjct: 1   MATSSLPTKSLPPFLPASSFPPSSPSTHFTKPPFLAPPDISLSTSSSSPSKLHIPSCAKK 60

Query: 61  NPWLDPFDDGDDPDMEYGSLFADGKQEEDPRPPDNPNNPYGFLKFPQGYMVEVASLGLKL 120
           NPWLDPFDDGDDPDMEYGSLFADGKQEEDPRPPDNPNNPYGFLKFPQGYMVEVASLGLKL
Sbjct: 61  NPWLDPFDDGDDPDMEYGSLFADGKQEEDPRPPDNPNNPYGFLKFPQGYMVEVASLGLKL 120

Query: 121 RGDVRRCCCVISGGVYENLLFFPAIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNV 180
           RGDVRRCCCVISGGVYENLLFFPAIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNV
Sbjct: 121 RGDVRRCCCVISGGVYENLLFFPAIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNV 180

Query: 181 YDPDDYFPEPADYTDMVGLLKGRYYDMVLSTKLAGIGHAAFLFMTTARDRVSYIYPDVNA 240
           YDPDDYFPEPADYTDMVGLLKGRYYDMVLSTKLAGIGHAAFLFMTTARDRVSYIYPDVNA
Sbjct: 181 YDPDDYFPEPADYTDMVGLLKGRYYDMVLSTKLAGIGHAAFLFMTTARDRVSYIYPDVNA 240

Query: 241 AGAGLFLSQTFKPDSSNLSEGGFNMYHQMVDWLGRPFRSVPRHPVPPLKVSISRKLKEIV 300
           AGAGLFLSQTFKPDSSNLSEGGFNMYHQMVDWLGRPFRSVPRHPVPPLKVSISRKLKEIV
Sbjct: 241 AGAGLFLSQTFKPDSSNLSEGGFNMYHQMVDWLGRPFRSVPRHPVPPLKVSISRKLKEIV 300

Query: 301 KEKYNQAGVEKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIANAIRGFKPVFVIP 360
           KEKYNQAGVEKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIANAIRGFKPVFVIP
Sbjct: 301 KEKYNQAGVEKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIANAIRGFKPVFVIP 360

Query: 361 HEKERENVEEEVGDNASIVFITTPGQLAALINDSAGVIATNTAAIQLAIAREKPSIALFC 420
           HEKERENVEEEVGDNASIVFITTPGQLAALINDSAGVIATNTAAIQLAIAREKPSIALFC
Sbjct: 361 HEKERENVEEEVGDNASIVFITTPGQLAALINDSAGVIATNTAAIQLAIAREKPSIALFC 420

Query: 421 SEEKAKLFVPDAEAKRCIAVSSTTGRLIDIDMGTVKRAIQSFEVPLALAFQ 472
           SEEKAKLFVPDAEAKRCIAVSSTTGRLIDIDMGTVKRAIQSFEVPLALAFQ
Sbjct: 421 SEEKAKLFVPDAEAKRCIAVSSTTGRLIDIDMGTVKRAIQSFEVPLALAFQ 471

[Close]

BLAST of Carg18735 vs. NCBI nr
Match: XP_022953552.1 (photosynthetic NDH subunit of subcomplex B 1, chloroplastic [Cucurbita moschata])

HSP 1 Score: 939.5 bits (2427), Expect = 1.1e-269
Identity = 469/471 (99.58%), Postives = 470/471 (99.79%), Query Frame = 0


Query: 1   MATSSLPTKSLPPFLPASSFPPSSPSTHFTKPPFLAPPDISLSTSSSSPSKLHIPSCAKK 60
           MATSSLPTKSLPPFLPASSFPPSSPSTHFTKPPFLAPPDISLSTSSSSPSKLHIPSCAKK
Sbjct: 1   MATSSLPTKSLPPFLPASSFPPSSPSTHFTKPPFLAPPDISLSTSSSSPSKLHIPSCAKK 60

Query: 61  NPWLDPFDDGDDPDMEYGSLFADGKQEEDPRPPDNPNNPYGFLKFPQGYMVEVASLGLKL 120
           NPWLDPFDDGDDPDMEYGSLFADGKQEEDPRPPDNPNNPYGFLKFPQGYMVEVASLGLKL
Sbjct: 61  NPWLDPFDDGDDPDMEYGSLFADGKQEEDPRPPDNPNNPYGFLKFPQGYMVEVASLGLKL 120

Query: 121 RGDVRRCCCVISGGVYENLLFFPAIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNV 180
           RGDVRRCCCVISGGVYENLLFFPAIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNV
Sbjct: 121 RGDVRRCCCVISGGVYENLLFFPAIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNV 180

Query: 181 YDPDDYFPEPADYTDMVGLLKGRYYDMVLSTKLAGIGHAAFLFMTTARDRVSYIYPDVNA 240
           YDPDDYFPEPADYTDMVGLLKGRYYDMVLSTKLAGIGHAAFLFMTTARDRVSYIYPDVNA
Sbjct: 181 YDPDDYFPEPADYTDMVGLLKGRYYDMVLSTKLAGIGHAAFLFMTTARDRVSYIYPDVNA 240

Query: 241 AGAGLFLSQTFKPDSSNLSEGGFNMYHQMVDWLGRPFRSVPRHPVPPLKVSISRKLKEIV 300
           AGAGLFLSQTFKPDSSNLSEGGFNMYHQMVDWLGRPFRSVPRHPVPPLKVSISRKLKEIV
Sbjct: 241 AGAGLFLSQTFKPDSSNLSEGGFNMYHQMVDWLGRPFRSVPRHPVPPLKVSISRKLKEIV 300

Query: 301 KEKYNQAGVEKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIANAIRGFKPVFVIP 360
           KEKYNQAGVEKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIANAIRGFKPVFVIP
Sbjct: 301 KEKYNQAGVEKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIANAIRGFKPVFVIP 360

Query: 361 HEKERENVEEEVGDNASIVFITTPGQLAALINDSAGVIATNTAAIQLAIAREKPSIALFC 420
           HEKERENVEEEVGDNASIVFITTPGQLAALINDSAGVIATNTAAIQLAIAREKPSIALFC
Sbjct: 361 HEKERENVEEEVGDNASIVFITTPGQLAALINDSAGVIATNTAAIQLAIAREKPSIALFC 420

Query: 421 SEEKAKLFVPDAEAKRCIAVSSTTGRLIDIDMGTVKRAIQSFEVPLALAFQ 472
           SEEKAKLFVPD+EAKRCIAVSS TGRLIDIDMGTVKRAIQSFEVPLALAFQ
Sbjct: 421 SEEKAKLFVPDSEAKRCIAVSSATGRLIDIDMGTVKRAIQSFEVPLALAFQ 471

[Close]

BLAST of Carg18735 vs. NCBI nr
Match: XP_022992479.1 (photosynthetic NDH subunit of subcomplex B 1, chloroplastic [Cucurbita maxima])

HSP 1 Score: 935.6 bits (2417), Expect = 1.6e-268
Identity = 466/471 (98.94%), Postives = 468/471 (99.36%), Query Frame = 0


Query: 1   MATSSLPTKSLPPFLPASSFPPSSPSTHFTKPPFLAPPDISLSTSSSSPSKLHIPSCAKK 60
           MATSSLPTKSLPPFLPASSFPPSSPSTHFTKPPFLAPPDISLSTSSSSPSKLHIPSCAKK
Sbjct: 1   MATSSLPTKSLPPFLPASSFPPSSPSTHFTKPPFLAPPDISLSTSSSSPSKLHIPSCAKK 60

Query: 61  NPWLDPFDDGDDPDMEYGSLFADGKQEEDPRPPDNPNNPYGFLKFPQGYMVEVASLGLKL 120
           NPWLDPFDDGDDPDMEYGSLFADGKQEEDPRPPDNPNNPYGFLKFPQGYMVE+ASLGLKL
Sbjct: 61  NPWLDPFDDGDDPDMEYGSLFADGKQEEDPRPPDNPNNPYGFLKFPQGYMVEIASLGLKL 120

Query: 121 RGDVRRCCCVISGGVYENLLFFPAIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNV 180
           RGDVRRCCCVISGGVYENLLFFP IQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNV
Sbjct: 121 RGDVRRCCCVISGGVYENLLFFPTIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNV 180

Query: 181 YDPDDYFPEPADYTDMVGLLKGRYYDMVLSTKLAGIGHAAFLFMTTARDRVSYIYPDVNA 240
           YDPDDYFPEPADYTDMVGLLKGRYYDMVLSTKLAGIGHAAFLFMTTARDRVSYIYPDVNA
Sbjct: 181 YDPDDYFPEPADYTDMVGLLKGRYYDMVLSTKLAGIGHAAFLFMTTARDRVSYIYPDVNA 240

Query: 241 AGAGLFLSQTFKPDSSNLSEGGFNMYHQMVDWLGRPFRSVPRHPVPPLKVSISRKLKEIV 300
           AGAGLFLSQTFKP+SSNLSEGGFNMYHQM DWLGRPFRSVPRHPVPPLKVSISRKLKEIV
Sbjct: 241 AGAGLFLSQTFKPESSNLSEGGFNMYHQMADWLGRPFRSVPRHPVPPLKVSISRKLKEIV 300

Query: 301 KEKYNQAGVEKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIANAIRGFKPVFVIP 360
           KEKYNQAGVEKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIANAIRGFKPVFVIP
Sbjct: 301 KEKYNQAGVEKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIANAIRGFKPVFVIP 360

Query: 361 HEKERENVEEEVGDNASIVFITTPGQLAALINDSAGVIATNTAAIQLAIAREKPSIALFC 420
           HEKERENVEEEVGDNASIVFITTPGQLAALINDSAGVIATNTAAIQLAIAREKPSIALFC
Sbjct: 361 HEKERENVEEEVGDNASIVFITTPGQLAALINDSAGVIATNTAAIQLAIAREKPSIALFC 420

Query: 421 SEEKAKLFVPDAEAKRCIAVSSTTGRLIDIDMGTVKRAIQSFEVPLALAFQ 472
           SEEKAKLFVPDAEAKRCIAVSS TGRLIDIDMGTVKRAIQSFEVPLALAFQ
Sbjct: 421 SEEKAKLFVPDAEAKRCIAVSSATGRLIDIDMGTVKRAIQSFEVPLALAFQ 471

[Close]

BLAST of Carg18735 vs. NCBI nr
Match: XP_023548446.1 (photosynthetic NDH subunit of subcomplex B 1, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 933.7 bits (2412), Expect = 6.2e-268
Identity = 467/471 (99.15%), Postives = 468/471 (99.36%), Query Frame = 0


Query: 1   MATSSLPTKSLPPFLPASSFPPSSPSTHFTKPPFLAPPDISLSTSSSSPSKLHIPSCAKK 60
           MATSSLPTKSLPPFLPASSFPPSSPSTHFTKPPFLAPPDISLSTSSSSP KLHIPSCAKK
Sbjct: 1   MATSSLPTKSLPPFLPASSFPPSSPSTHFTKPPFLAPPDISLSTSSSSPCKLHIPSCAKK 60

Query: 61  NPWLDPFDDGDDPDMEYGSLFADGKQEEDPRPPDNPNNPYGFLKFPQGYMVEVASLGLKL 120
           NPWLDPFDDGDDPDMEYGSLFADGKQEEDPRPPDNPNNPYGFLKFPQGYMVEVASLGLKL
Sbjct: 61  NPWLDPFDDGDDPDMEYGSLFADGKQEEDPRPPDNPNNPYGFLKFPQGYMVEVASLGLKL 120

Query: 121 RGDVRRCCCVISGGVYENLLFFPAIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNV 180
           RGDVRRCCCVISGGVYENLLFFPAIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNV
Sbjct: 121 RGDVRRCCCVISGGVYENLLFFPAIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNV 180

Query: 181 YDPDDYFPEPADYTDMVGLLKGRYYDMVLSTKLAGIGHAAFLFMTTARDRVSYIYPDVNA 240
           YDPDDYFPEPADYTDMVGLLKGRYYDMVLSTKLAG GHAAFLFMTTARDRVSYIYPDVNA
Sbjct: 181 YDPDDYFPEPADYTDMVGLLKGRYYDMVLSTKLAGFGHAAFLFMTTARDRVSYIYPDVNA 240

Query: 241 AGAGLFLSQTFKPDSSNLSEGGFNMYHQMVDWLGRPFRSVPRHPVPPLKVSISRKLKEIV 300
           AGAGLFLSQTFKPDSSNLSEGGFNMYHQMVDWLGRPFRSVPRH VPPLKVSISRKLKEIV
Sbjct: 241 AGAGLFLSQTFKPDSSNLSEGGFNMYHQMVDWLGRPFRSVPRHLVPPLKVSISRKLKEIV 300

Query: 301 KEKYNQAGVEKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIANAIRGFKPVFVIP 360
           KEKYNQAGVEKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIANAIRGFKPVFVIP
Sbjct: 301 KEKYNQAGVEKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIANAIRGFKPVFVIP 360

Query: 361 HEKERENVEEEVGDNASIVFITTPGQLAALINDSAGVIATNTAAIQLAIAREKPSIALFC 420
           HEKERENVEEEVGDNASIVFITTPGQLAALINDSAGVIATNTAAIQLAIAREKPSIALFC
Sbjct: 361 HEKERENVEEEVGDNASIVFITTPGQLAALINDSAGVIATNTAAIQLAIAREKPSIALFC 420

Query: 421 SEEKAKLFVPDAEAKRCIAVSSTTGRLIDIDMGTVKRAIQSFEVPLALAFQ 472
           SEEKAKLFVP+AEAKRCIAVSSTTGRLIDIDMGTVKRAIQSFEVPLALAFQ
Sbjct: 421 SEEKAKLFVPEAEAKRCIAVSSTTGRLIDIDMGTVKRAIQSFEVPLALAFQ 471

[Close]

BLAST of Carg18735 vs. NCBI nr
Match: XP_038896546.1 (photosynthetic NDH subunit of subcomplex B 1, chloroplastic [Benincasa hispida])

HSP 1 Score: 885.6 bits (2287), Expect = 1.9e-253
Identity = 442/471 (93.84%), Postives = 456/471 (96.82%), Query Frame = 0


Query: 1   MATSSLPTKSLPPFLPASSFPPSSPSTHFTKPPFLAPPDISLSTSSSSPSKLHIPSCAKK 60
           MATSSLPTKSLPPF P SSF PSSPSTHFTKP FLAPPDISLSTSSSS SKL IPS +KK
Sbjct: 1   MATSSLPTKSLPPFSPTSSFSPSSPSTHFTKPLFLAPPDISLSTSSSSSSKLLIPS-SKK 60

Query: 61  NPWLDPFDDGDDPDMEYGSLFADGKQEEDPRPPDNPNNPYGFLKFPQGYMVEVASLGLKL 120
           N WLDPFDDGDDP+MEYGSLFADGKQEEDPRPPDNPNNPYGFLKFPQGYMVE+ASLGLKL
Sbjct: 61  NQWLDPFDDGDDPEMEYGSLFADGKQEEDPRPPDNPNNPYGFLKFPQGYMVEIASLGLKL 120

Query: 121 RGDVRRCCCVISGGVYENLLFFPAIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNV 180
           RGDVRRCCCV+SGGVYENLLFFPAIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNV
Sbjct: 121 RGDVRRCCCVMSGGVYENLLFFPAIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNV 180

Query: 181 YDPDDYFPEPADYTDMVGLLKGRYYDMVLSTKLAGIGHAAFLFMTTARDRVSYIYPDVNA 240
           YDPDDYFPEPA+YTDMVGLLKGRYYDMVLSTKLAG+GHA FLFMTTARDRVSYIYPDVNA
Sbjct: 181 YDPDDYFPEPAEYTDMVGLLKGRYYDMVLSTKLAGLGHAVFLFMTTARDRVSYIYPDVNA 240

Query: 241 AGAGLFLSQTFKPDSSNLSEGGFNMYHQMVDWLGRPFRSVPRHPVPPLKVSISRKLKEIV 300
           AGAGLFLS+TFKPDSSNLSEGGFNMYHQMVDWLGRPFRSVPRHPVPPLKVSISRKLKE+V
Sbjct: 241 AGAGLFLSETFKPDSSNLSEGGFNMYHQMVDWLGRPFRSVPRHPVPPLKVSISRKLKEVV 300

Query: 301 KEKYNQAGVEKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIANAIRGFKPVFVIP 360
            EKY +AG EKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIANA+RGFKPVFVIP
Sbjct: 301 AEKYKKAGAEKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIANAVRGFKPVFVIP 360

Query: 361 HEKERENVEEEVGDNASIVFITTPGQLAALINDSAGVIATNTAAIQLAIAREKPSIALFC 420
           HEKERENVEEEVGD+ASIVFITTPGQLAALINDSAGVIATNTAA+QLAIAREKPSIALFC
Sbjct: 361 HEKERENVEEEVGDDASIVFITTPGQLAALINDSAGVIATNTAAVQLAIAREKPSIALFC 420

Query: 421 SEEKAKLFVPDAEAKRCIAVSSTTGRLIDIDMGTVKRAIQSFEVPLALAFQ 472
           SEEKAKLFVPDAEAKRCI VSS TGRL DID+GTVK+AIQSFEVPLALAFQ
Sbjct: 421 SEEKAKLFVPDAEAKRCITVSSATGRLTDIDLGTVKKAIQSFEVPLALAFQ 470

[Close]

BLAST of Carg18735 vs. ExPASy Swiss-Prot
Match: Q9S9N6 (Photosynthetic NDH subunit of subcomplex B 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PNSB1 PE=2 SV=1)

HSP 1 Score: 664.8 bits (1714), Expect = 7.0e-190
Identity = 337/461 (73.10%), Postives = 386/461 (83.73%), Query Frame = 0


Query: 17  ASSFP--PSSPSTHFTKPPF-LAPPDISLS-----TSSSSPSKLHIPSCAKKNPWLDPFD 76
           ASS P  P   S  F  PPF  + P + L+     TS SS   +++    K NPWLDPFD
Sbjct: 2   ASSLPLLPKPISPFFKTPPFSTSKPLVFLNFQTRLTSRSSDVSVNLKK--KNNPWLDPFD 61

Query: 77  DGDDPDMEYGSLFADGKQEEDPRPPDNPNNPYGFLKFPQGYMVEVASLGLKLRGDVRRCC 136
            G+DPD EYGSLFADGKQ+EDPRPPDNP+NPYGFLKFP+GY VE+ASL LK+RGDVRRCC
Sbjct: 62  SGEDPDNEYGSLFADGKQDEDPRPPDNPDNPYGFLKFPKGYTVELASLPLKIRGDVRRCC 121

Query: 137 CVISGGVYENLLFFPAIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNVYDPDDYFP 196
           CVISGGVYENLLFFP IQL+KDRYPGVQ+D++ + RGKQTYELNKNVRW+NVYDPDD++P
Sbjct: 122 CVISGGVYENLLFFPTIQLIKDRYPGVQVDILTTERGKQTYELNKNVRWANVYDPDDHWP 181

Query: 197 EPADYTDMVGLLKGRYYDMVLSTKLAGIGHAAFLFMTTARDRVSYIYPDVNAAGAGLFLS 256
           EPA+YTDM+GLLKGRYYDMVLSTKLAG+GHAAFLFMTTARDRVSYIYP+VN+AGAGL LS
Sbjct: 182 EPAEYTDMIGLLKGRYYDMVLSTKLAGLGHAAFLFMTTARDRVSYIYPNVNSAGAGLMLS 241

Query: 257 QTFKPDSSNLSEGGFNMYHQMVDWLGRPFRSVPRHPVPPLKVSISRKLKEIVKEKYNQAG 316
           +TF  +++NLSE G++MY QM DWLGRPFRSVPR P+ PL+VSISRK+KE+V  KY  AG
Sbjct: 242 ETFTAENTNLSELGYSMYTQMEDWLGRPFRSVPRTPLLPLRVSISRKVKEVVAAKYRNAG 301

Query: 317 VEKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIANAIRGFKPVFVIPHEKERENV 376
              GK+IVIHGIESDSKASMQSKGD DSLL ++ WA+I   +RGFKPVFVIPHEKERENV
Sbjct: 302 AVTGKFIVIHGIESDSKASMQSKGDADSLLSLEKWAKIIKGVRGFKPVFVIPHEKERENV 361

Query: 377 EEEVGDNASIVFITTPGQLAALINDSAGVIATNTAAIQLAIAREKPSIALFCSEEKAKLF 436
           E+ VGD+ SIVFITTPGQLAALINDSAGVIATNTAAIQLA AR+KP I LF SEEK KLF
Sbjct: 362 EDFVGDDTSIVFITTPGQLAALINDSAGVIATNTAAIQLANARDKPCIGLFSSEEKGKLF 421

Query: 437 VPDAEAK-RCIAVSSTTGRLIDIDMGTVKRAIQSFEVPLAL 469
           VP AE K  C+ ++S TG+L DID+GTVK A+Q FE  LAL
Sbjct: 422 VPYAEEKSNCVIIASKTGKLADIDIGTVKNAMQVFEGSLAL 460

[Close]

BLAST of Carg18735 vs. ExPASy TrEMBL
Match: A0A6J1GNJ2 (photosynthetic NDH subunit of subcomplex B 1, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111456057 PE=4 SV=1)

HSP 1 Score: 939.5 bits (2427), Expect = 5.4e-270
Identity = 469/471 (99.58%), Postives = 470/471 (99.79%), Query Frame = 0


Query: 1   MATSSLPTKSLPPFLPASSFPPSSPSTHFTKPPFLAPPDISLSTSSSSPSKLHIPSCAKK 60
           MATSSLPTKSLPPFLPASSFPPSSPSTHFTKPPFLAPPDISLSTSSSSPSKLHIPSCAKK
Sbjct: 1   MATSSLPTKSLPPFLPASSFPPSSPSTHFTKPPFLAPPDISLSTSSSSPSKLHIPSCAKK 60

Query: 61  NPWLDPFDDGDDPDMEYGSLFADGKQEEDPRPPDNPNNPYGFLKFPQGYMVEVASLGLKL 120
           NPWLDPFDDGDDPDMEYGSLFADGKQEEDPRPPDNPNNPYGFLKFPQGYMVEVASLGLKL
Sbjct: 61  NPWLDPFDDGDDPDMEYGSLFADGKQEEDPRPPDNPNNPYGFLKFPQGYMVEVASLGLKL 120

Query: 121 RGDVRRCCCVISGGVYENLLFFPAIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNV 180
           RGDVRRCCCVISGGVYENLLFFPAIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNV
Sbjct: 121 RGDVRRCCCVISGGVYENLLFFPAIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNV 180

Query: 181 YDPDDYFPEPADYTDMVGLLKGRYYDMVLSTKLAGIGHAAFLFMTTARDRVSYIYPDVNA 240
           YDPDDYFPEPADYTDMVGLLKGRYYDMVLSTKLAGIGHAAFLFMTTARDRVSYIYPDVNA
Sbjct: 181 YDPDDYFPEPADYTDMVGLLKGRYYDMVLSTKLAGIGHAAFLFMTTARDRVSYIYPDVNA 240

Query: 241 AGAGLFLSQTFKPDSSNLSEGGFNMYHQMVDWLGRPFRSVPRHPVPPLKVSISRKLKEIV 300
           AGAGLFLSQTFKPDSSNLSEGGFNMYHQMVDWLGRPFRSVPRHPVPPLKVSISRKLKEIV
Sbjct: 241 AGAGLFLSQTFKPDSSNLSEGGFNMYHQMVDWLGRPFRSVPRHPVPPLKVSISRKLKEIV 300

Query: 301 KEKYNQAGVEKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIANAIRGFKPVFVIP 360
           KEKYNQAGVEKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIANAIRGFKPVFVIP
Sbjct: 301 KEKYNQAGVEKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIANAIRGFKPVFVIP 360

Query: 361 HEKERENVEEEVGDNASIVFITTPGQLAALINDSAGVIATNTAAIQLAIAREKPSIALFC 420
           HEKERENVEEEVGDNASIVFITTPGQLAALINDSAGVIATNTAAIQLAIAREKPSIALFC
Sbjct: 361 HEKERENVEEEVGDNASIVFITTPGQLAALINDSAGVIATNTAAIQLAIAREKPSIALFC 420

Query: 421 SEEKAKLFVPDAEAKRCIAVSSTTGRLIDIDMGTVKRAIQSFEVPLALAFQ 472
           SEEKAKLFVPD+EAKRCIAVSS TGRLIDIDMGTVKRAIQSFEVPLALAFQ
Sbjct: 421 SEEKAKLFVPDSEAKRCIAVSSATGRLIDIDMGTVKRAIQSFEVPLALAFQ 471

[Close]

BLAST of Carg18735 vs. ExPASy TrEMBL
Match: A0A6J1JXN2 (photosynthetic NDH subunit of subcomplex B 1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111488799 PE=4 SV=1)

HSP 1 Score: 935.6 bits (2417), Expect = 7.9e-269
Identity = 466/471 (98.94%), Postives = 468/471 (99.36%), Query Frame = 0


Query: 1   MATSSLPTKSLPPFLPASSFPPSSPSTHFTKPPFLAPPDISLSTSSSSPSKLHIPSCAKK 60
           MATSSLPTKSLPPFLPASSFPPSSPSTHFTKPPFLAPPDISLSTSSSSPSKLHIPSCAKK
Sbjct: 1   MATSSLPTKSLPPFLPASSFPPSSPSTHFTKPPFLAPPDISLSTSSSSPSKLHIPSCAKK 60

Query: 61  NPWLDPFDDGDDPDMEYGSLFADGKQEEDPRPPDNPNNPYGFLKFPQGYMVEVASLGLKL 120
           NPWLDPFDDGDDPDMEYGSLFADGKQEEDPRPPDNPNNPYGFLKFPQGYMVE+ASLGLKL
Sbjct: 61  NPWLDPFDDGDDPDMEYGSLFADGKQEEDPRPPDNPNNPYGFLKFPQGYMVEIASLGLKL 120

Query: 121 RGDVRRCCCVISGGVYENLLFFPAIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNV 180
           RGDVRRCCCVISGGVYENLLFFP IQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNV
Sbjct: 121 RGDVRRCCCVISGGVYENLLFFPTIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNV 180

Query: 181 YDPDDYFPEPADYTDMVGLLKGRYYDMVLSTKLAGIGHAAFLFMTTARDRVSYIYPDVNA 240
           YDPDDYFPEPADYTDMVGLLKGRYYDMVLSTKLAGIGHAAFLFMTTARDRVSYIYPDVNA
Sbjct: 181 YDPDDYFPEPADYTDMVGLLKGRYYDMVLSTKLAGIGHAAFLFMTTARDRVSYIYPDVNA 240

Query: 241 AGAGLFLSQTFKPDSSNLSEGGFNMYHQMVDWLGRPFRSVPRHPVPPLKVSISRKLKEIV 300
           AGAGLFLSQTFKP+SSNLSEGGFNMYHQM DWLGRPFRSVPRHPVPPLKVSISRKLKEIV
Sbjct: 241 AGAGLFLSQTFKPESSNLSEGGFNMYHQMADWLGRPFRSVPRHPVPPLKVSISRKLKEIV 300

Query: 301 KEKYNQAGVEKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIANAIRGFKPVFVIP 360
           KEKYNQAGVEKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIANAIRGFKPVFVIP
Sbjct: 301 KEKYNQAGVEKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIANAIRGFKPVFVIP 360

Query: 361 HEKERENVEEEVGDNASIVFITTPGQLAALINDSAGVIATNTAAIQLAIAREKPSIALFC 420
           HEKERENVEEEVGDNASIVFITTPGQLAALINDSAGVIATNTAAIQLAIAREKPSIALFC
Sbjct: 361 HEKERENVEEEVGDNASIVFITTPGQLAALINDSAGVIATNTAAIQLAIAREKPSIALFC 420

Query: 421 SEEKAKLFVPDAEAKRCIAVSSTTGRLIDIDMGTVKRAIQSFEVPLALAFQ 472
           SEEKAKLFVPDAEAKRCIAVSS TGRLIDIDMGTVKRAIQSFEVPLALAFQ
Sbjct: 421 SEEKAKLFVPDAEAKRCIAVSSATGRLIDIDMGTVKRAIQSFEVPLALAFQ 471

[Close]

BLAST of Carg18735 vs. ExPASy TrEMBL
Match: A0A5A7UYW0 (Photosynthetic NDH subunit of subcomplex B 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G001650 PE=4 SV=1)

HSP 1 Score: 875.2 bits (2260), Expect = 1.3e-250
Identity = 435/471 (92.36%), Postives = 455/471 (96.60%), Query Frame = 0


Query: 1   MATSSLPTKSLPPFLPASSFPPSSPSTHFTKPPFLAPPDISLSTSSSSPSKLHIPSCAKK 60
           MATSSLPTKSLPPFLP SSFPPSSPSTHFTKP FL+P  ISLSTS    SKL IP C+KK
Sbjct: 1   MATSSLPTKSLPPFLPTSSFPPSSPSTHFTKPLFLSPLLISLSTS----SKLRIP-CSKK 60

Query: 61  NPWLDPFDDGDDPDMEYGSLFADGKQEEDPRPPDNPNNPYGFLKFPQGYMVEVASLGLKL 120
           NPW DPFDDG+DP+MEYGSLF+DGKQEEDPRPPDNPNNPYGFLKFPQGYMVE+ASLGLKL
Sbjct: 61  NPWFDPFDDGEDPEMEYGSLFSDGKQEEDPRPPDNPNNPYGFLKFPQGYMVEIASLGLKL 120

Query: 121 RGDVRRCCCVISGGVYENLLFFPAIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNV 180
           RGDVRRCCCVISGGVYENLLFFPAIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNV
Sbjct: 121 RGDVRRCCCVISGGVYENLLFFPAIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNV 180

Query: 181 YDPDDYFPEPADYTDMVGLLKGRYYDMVLSTKLAGIGHAAFLFMTTARDRVSYIYPDVNA 240
           YDPDDYFPEPA+YTDMVG+LKGRYYDMVLSTKLAGIGHA FLFMTTARDRVSYIYPDVNA
Sbjct: 181 YDPDDYFPEPAEYTDMVGVLKGRYYDMVLSTKLAGIGHAVFLFMTTARDRVSYIYPDVNA 240

Query: 241 AGAGLFLSQTFKPDSSNLSEGGFNMYHQMVDWLGRPFRSVPRHPVPPLKVSISRKLKEIV 300
           AGAGLFLS+TFKP+SSNLSEGGFNMYHQMVDWLGRPFRSVPRHPVPPLKVSI+RKLKE++
Sbjct: 241 AGAGLFLSETFKPESSNLSEGGFNMYHQMVDWLGRPFRSVPRHPVPPLKVSIARKLKEVI 300

Query: 301 KEKYNQAGVEKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIANAIRGFKPVFVIP 360
            EKY +AGVEKGKYIVIHGIESDSKASMQSKGDTDSLLPI+AWAEIAN IRGFKPVFVIP
Sbjct: 301 AEKYKKAGVEKGKYIVIHGIESDSKASMQSKGDTDSLLPIRAWAEIANCIRGFKPVFVIP 360

Query: 361 HEKERENVEEEVGDNASIVFITTPGQLAALINDSAGVIATNTAAIQLAIAREKPSIALFC 420
           HEKERENVEEEVG+NASIVFITTPGQLAALINDSAG+IATNTAA+QLAIAREKPSIALFC
Sbjct: 361 HEKERENVEEEVGNNASIVFITTPGQLAALINDSAGLIATNTAAVQLAIAREKPSIALFC 420

Query: 421 SEEKAKLFVPDAEAKRCIAVSSTTGRLIDIDMGTVKRAIQSFEVPLALAFQ 472
           SEEKAKLFVPDAEAKRCI VSSTTGRLIDIDMGT+K+AIQSFEVPLALAFQ
Sbjct: 421 SEEKAKLFVPDAEAKRCITVSSTTGRLIDIDMGTIKKAIQSFEVPLALAFQ 466

[Close]

BLAST of Carg18735 vs. ExPASy TrEMBL
Match: A0A1S3CEK1 (photosynthetic NDH subunit of subcomplex B 1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103499839 PE=4 SV=1)

HSP 1 Score: 872.1 bits (2252), Expect = 1.1e-249
Identity = 434/471 (92.14%), Postives = 454/471 (96.39%), Query Frame = 0


Query: 1   MATSSLPTKSLPPFLPASSFPPSSPSTHFTKPPFLAPPDISLSTSSSSPSKLHIPSCAKK 60
           MATSSLPTKSLPPFLP SSFPPSSPSTHFTKP FL+P  ISLSTS    SKL IP C+KK
Sbjct: 1   MATSSLPTKSLPPFLPTSSFPPSSPSTHFTKPLFLSPLLISLSTS----SKLRIP-CSKK 60

Query: 61  NPWLDPFDDGDDPDMEYGSLFADGKQEEDPRPPDNPNNPYGFLKFPQGYMVEVASLGLKL 120
           NPW DPFDDG+DP+MEYGSLF+DGKQEEDPRPPDNPNNPYGFLKFPQGYMVE+ASLGLKL
Sbjct: 61  NPWFDPFDDGEDPEMEYGSLFSDGKQEEDPRPPDNPNNPYGFLKFPQGYMVEIASLGLKL 120

Query: 121 RGDVRRCCCVISGGVYENLLFFPAIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNV 180
           RGDVRRCCCVISGGVYENLLFFPAIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNV
Sbjct: 121 RGDVRRCCCVISGGVYENLLFFPAIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNV 180

Query: 181 YDPDDYFPEPADYTDMVGLLKGRYYDMVLSTKLAGIGHAAFLFMTTARDRVSYIYPDVNA 240
           YDPDDYFPEPA+YTDMVG+LKGRYYDMVLSTKLAGIGHA FLFMTTARDRVSYIYPDVNA
Sbjct: 181 YDPDDYFPEPAEYTDMVGVLKGRYYDMVLSTKLAGIGHAVFLFMTTARDRVSYIYPDVNA 240

Query: 241 AGAGLFLSQTFKPDSSNLSEGGFNMYHQMVDWLGRPFRSVPRHPVPPLKVSISRKLKEIV 300
           AGAGLFLS+TFKP+SSNLSEGGFNMYHQMVDWLGRPFRSVPRHPVPPLKVSI+RKLKE++
Sbjct: 241 AGAGLFLSETFKPESSNLSEGGFNMYHQMVDWLGRPFRSVPRHPVPPLKVSIARKLKEVI 300

Query: 301 KEKYNQAGVEKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIANAIRGFKPVFVIP 360
            EKY +AGVEKGKYIVIHGIESDSKASMQSKGDTDSLLPI+AWAEIAN IRGFKPVFVIP
Sbjct: 301 AEKYKKAGVEKGKYIVIHGIESDSKASMQSKGDTDSLLPIRAWAEIANCIRGFKPVFVIP 360

Query: 361 HEKERENVEEEVGDNASIVFITTPGQLAALINDSAGVIATNTAAIQLAIAREKPSIALFC 420
            EKERENVEEEVG+NASIVFITTPGQLAALINDSAG+IATNTAA+QLAIAREKPSIALFC
Sbjct: 361 REKERENVEEEVGNNASIVFITTPGQLAALINDSAGLIATNTAAVQLAIAREKPSIALFC 420

Query: 421 SEEKAKLFVPDAEAKRCIAVSSTTGRLIDIDMGTVKRAIQSFEVPLALAFQ 472
           SEEKAKLFVPDAEAKRCI VSSTTGRLIDIDMGT+K+AIQSFEVPLALAFQ
Sbjct: 421 SEEKAKLFVPDAEAKRCITVSSTTGRLIDIDMGTIKKAIQSFEVPLALAFQ 466

[Close]

BLAST of Carg18735 vs. ExPASy TrEMBL
Match: A0A6J1CV27 (photosynthetic NDH subunit of subcomplex B 1, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111014527 PE=4 SV=1)

HSP 1 Score: 869.8 bits (2246), Expect = 5.3e-249
Identity = 432/470 (91.91%), Postives = 451/470 (95.96%), Query Frame = 0


Query: 1   MATSSLPTKSLPPFLPASSFPPSSPSTHFTKPPFLAPPDISLSTSSSSPSKLHIPSCAKK 60
           MATSSLPTKSLPPFLP+S+ PPSSPSTHFTKP FLAPPDIS  +++ SP K HIP+ AKK
Sbjct: 3   MATSSLPTKSLPPFLPSSASPPSSPSTHFTKPLFLAPPDISPLSTTPSPPKSHIPT-AKK 62

Query: 61  NPWLDPFDDGDDPDMEYGSLFADGKQEEDPRPPDNPNNPYGFLKFPQGYMVEVASLGLKL 120
           NPW DPFDDGDDPDMEYGSLFADGKQEEDPRPPDNPNNPYGFLKFPQGYMVE+ASLGLKL
Sbjct: 63  NPWFDPFDDGDDPDMEYGSLFADGKQEEDPRPPDNPNNPYGFLKFPQGYMVEIASLGLKL 122

Query: 121 RGDVRRCCCVISGGVYENLLFFPAIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNV 180
           RGDVRRCCCVISGGVYENLLFFPAIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNV
Sbjct: 123 RGDVRRCCCVISGGVYENLLFFPAIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNV 182

Query: 181 YDPDDYFPEPADYTDMVGLLKGRYYDMVLSTKLAGIGHAAFLFMTTARDRVSYIYPDVNA 240
           YDPDDYFPEPA+YTDMVGLLK RYYDMVLSTKLAG+GHA FLFMTTARDRVSYIYPDVNA
Sbjct: 183 YDPDDYFPEPAEYTDMVGLLKSRYYDMVLSTKLAGVGHAVFLFMTTARDRVSYIYPDVNA 242

Query: 241 AGAGLFLSQTFKPDSSNLSEGGFNMYHQMVDWLGRPFRSVPRHPVPPLKVSISRKLKEIV 300
           AGAGLFLS+TFKPDSSNLSEGGFNMYHQMVDWLGRPFRSVPRHPVPPLKV ISRKLKE+V
Sbjct: 243 AGAGLFLSETFKPDSSNLSEGGFNMYHQMVDWLGRPFRSVPRHPVPPLKVLISRKLKEVV 302

Query: 301 KEKYNQAGVEKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIANAIRGFKPVFVIP 360
           +EKY +AG EKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIA+ IRGFKPVFVIP
Sbjct: 303 EEKYKKAGAEKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIASTIRGFKPVFVIP 362

Query: 361 HEKERENVEEEVGDNASIVFITTPGQLAALINDSAGVIATNTAAIQLAIAREKPSIALFC 420
           HEKERENVEEEVGD+A I+FITTPGQLAALINDSAG+IATNTAAIQLAIAREKPSIALF 
Sbjct: 363 HEKERENVEEEVGDDAGILFITTPGQLAALINDSAGLIATNTAAIQLAIAREKPSIALFS 422

Query: 421 SEEKAKLFVPDAEAKRCIAVSSTTGRLIDIDMGTVKRAIQSFEVPLALAF 471
           S+EKAKLFVPDAE+KRCI VSS TGRLIDIDMGTVKRAIQSFEVPLALAF
Sbjct: 423 SDEKAKLFVPDAESKRCITVSSATGRLIDIDMGTVKRAIQSFEVPLALAF 471

[Close]

BLAST of Carg18735 vs. TAIR 10
Match: AT1G15980.1 (NDH-dependent cyclic electron flow 1 )

HSP 1 Score: 664.8 bits (1714), Expect = 5.0e-191
Identity = 337/461 (73.10%), Postives = 386/461 (83.73%), Query Frame = 0


Query: 17  ASSFP--PSSPSTHFTKPPF-LAPPDISLS-----TSSSSPSKLHIPSCAKKNPWLDPFD 76
           ASS P  P   S  F  PPF  + P + L+     TS SS   +++    K NPWLDPFD
Sbjct: 2   ASSLPLLPKPISPFFKTPPFSTSKPLVFLNFQTRLTSRSSDVSVNLKK--KNNPWLDPFD 61

Query: 77  DGDDPDMEYGSLFADGKQEEDPRPPDNPNNPYGFLKFPQGYMVEVASLGLKLRGDVRRCC 136
            G+DPD EYGSLFADGKQ+EDPRPPDNP+NPYGFLKFP+GY VE+ASL LK+RGDVRRCC
Sbjct: 62  SGEDPDNEYGSLFADGKQDEDPRPPDNPDNPYGFLKFPKGYTVELASLPLKIRGDVRRCC 121

Query: 137 CVISGGVYENLLFFPAIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNVYDPDDYFP 196
           CVISGGVYENLLFFP IQL+KDRYPGVQ+D++ + RGKQTYELNKNVRW+NVYDPDD++P
Sbjct: 122 CVISGGVYENLLFFPTIQLIKDRYPGVQVDILTTERGKQTYELNKNVRWANVYDPDDHWP 181

Query: 197 EPADYTDMVGLLKGRYYDMVLSTKLAGIGHAAFLFMTTARDRVSYIYPDVNAAGAGLFLS 256
           EPA+YTDM+GLLKGRYYDMVLSTKLAG+GHAAFLFMTTARDRVSYIYP+VN+AGAGL LS
Sbjct: 182 EPAEYTDMIGLLKGRYYDMVLSTKLAGLGHAAFLFMTTARDRVSYIYPNVNSAGAGLMLS 241

Query: 257 QTFKPDSSNLSEGGFNMYHQMVDWLGRPFRSVPRHPVPPLKVSISRKLKEIVKEKYNQAG 316
           +TF  +++NLSE G++MY QM DWLGRPFRSVPR P+ PL+VSISRK+KE+V  KY  AG
Sbjct: 242 ETFTAENTNLSELGYSMYTQMEDWLGRPFRSVPRTPLLPLRVSISRKVKEVVAAKYRNAG 301

Query: 317 VEKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIANAIRGFKPVFVIPHEKERENV 376
              GK+IVIHGIESDSKASMQSKGD DSLL ++ WA+I   +RGFKPVFVIPHEKERENV
Sbjct: 302 AVTGKFIVIHGIESDSKASMQSKGDADSLLSLEKWAKIIKGVRGFKPVFVIPHEKERENV 361

Query: 377 EEEVGDNASIVFITTPGQLAALINDSAGVIATNTAAIQLAIAREKPSIALFCSEEKAKLF 436
           E+ VGD+ SIVFITTPGQLAALINDSAGVIATNTAAIQLA AR+KP I LF SEEK KLF
Sbjct: 362 EDFVGDDTSIVFITTPGQLAALINDSAGVIATNTAAIQLANARDKPCIGLFSSEEKGKLF 421

Query: 437 VPDAEAK-RCIAVSSTTGRLIDIDMGTVKRAIQSFEVPLAL 469
           VP AE K  C+ ++S TG+L DID+GTVK A+Q FE  LAL
Sbjct: 422 VPYAEEKSNCVIIASKTGKLADIDIGTVKNAMQVFEGSLAL 460

The following BLAST results are available for this feature:

BLAST of Carg18735 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6575629.1	1.3e-270	100.00	Photosynthetic NDH subunit of subcomplex B 1, chloroplastic, partial [Cucurbita ...	[more]
XP_022953552.1	1.1e-269	99.58	photosynthetic NDH subunit of subcomplex B 1, chloroplastic [Cucurbita moschata]	[more]
XP_022992479.1	1.6e-268	98.94	photosynthetic NDH subunit of subcomplex B 1, chloroplastic [Cucurbita maxima]	[more]
XP_023548446.1	6.2e-268	99.15	photosynthetic NDH subunit of subcomplex B 1, chloroplastic [Cucurbita pepo subs...	[more]
XP_038896546.1	1.9e-253	93.84	photosynthetic NDH subunit of subcomplex B 1, chloroplastic [Benincasa hispida]	[more]

BLAST of Carg18735 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9S9N6	7.0e-190	73.10	Photosynthetic NDH subunit of subcomplex B 1, chloroplastic OS=Arabidopsis thali...	[more]

BLAST of Carg18735 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GNJ2	5.4e-270	99.58	photosynthetic NDH subunit of subcomplex B 1, chloroplastic OS=Cucurbita moschat...	[more]
A0A6J1JXN2	7.9e-269	98.94	photosynthetic NDH subunit of subcomplex B 1, chloroplastic OS=Cucurbita maxima ...	[more]
A0A5A7UYW0	1.3e-250	92.36	Photosynthetic NDH subunit of subcomplex B 1 OS=Cucumis melo var. makuwa OX=1194...	[more]
A0A1S3CEK1	1.1e-249	92.14	photosynthetic NDH subunit of subcomplex B 1, chloroplastic OS=Cucumis melo OX=3...	[more]
A0A6J1CV27	5.3e-249	91.91	photosynthetic NDH subunit of subcomplex B 1, chloroplastic OS=Momordica charant...	[more]

BLAST of Carg18735 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G15980.1	5.0e-191	73.10	NDH-dependent cyclic electron flow 1	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.40.50.2000	Glycogen Phosphorylase B;	coord: 138..272 e-value: 1.6E-8 score: 36.8
None	No IPR available	GENE3D	3.40.50.2000	Glycogen Phosphorylase B;	coord: 299..464 e-value: 7.1E-12 score: 47.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..99
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..54
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 14..32
None	No IPR available	SUPERFAMILY	53756	UDP-Glycosyltransferase/glycogen phosphorylase	coord: 138..461
IPR044983	Photosynthetic NDH subunit of subcomplex B 1, chloroplastic	PANTHER	PTHR37698	PHOTOSYNTHETIC NDH SUBUNIT OF SUBCOMPLEX B 1, CHLOROPLASTIC	coord: 1..469

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18735-RA	Carg18735-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009773	photosynthetic electron transport in photosystem I
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0010598	NAD(P)H dehydrogenase complex (plastoquinone)
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0016757	glycosyltransferase activity