Carg18593 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg18593
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	protein phosphatase 1 regulatory subunit pprA
Location	Carg_Chr12: 11730771 .. 11732374 (-)
RNA-Seq Expression	Carg18593
Synteny	Carg18593

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CTGAATCAGAGGCGGATGATCTCGATTATACGATTCTCGATCTCACAAGCTTTGTGGTCCACGATCTCGACTACATCCGAGTTGCCTTCGAGTTTAACGGAATTGGACCTGACGGAAAATCGACTTTCGAGTTTTGATTCTCGGATTAGAGAGGTCTAGAACCTGAAGCAGCTCTCTCTTAGTCAGAACTTTATCAATGATGCTACGGCTGAATCGCTTTCTCGCTGGTGCGCACTGTCAGGTCTCGAGGTATTCAATCGTTCACTTCGTCGCGTTCAGTTTTAGAAAAGTGTTCCAGAAATGGCCGAATCTTGCTTCGCATTACAGTTTTATAGAGATATTTGGTTTCTTTTTCTGTCTGAATGTGTACAGTGTGAGTCCTGAAGCGATTCTCGGATAGAGAGGTCTAGAACCTGAAGAAGCTCTCTCTTCGTCAGAACCTCATCAATGATGCTACGGCTGAATCGCTTTCTCGCTGGCGCGCACTGTCAGGTCTCGAGGTATTCAATAGTTCACTTCGTCGCGTTCAGTTTTAGAAGAGTGTTAGAGAAATGGCCGAATCTTGCTTCGCATTACAGTTTTATAGAGATATTTGGTTTCTTTGCTGTCTGAATGTGTACAGTGTGAGTCCTAAAGCGATTCTCGGATTAGAGAGGTCGAGAACCTGAAGAAGGTCTCTCTTCGTCAGAACCTCATCAATGATGCTACGGCTGAATCGCTTTCTCGCTGGAGCGCACATGTCAGGTCTCGAGGTATTCAATCGTTCACTTCGTTGCGTTCAGTTTTAGAAAAGTGTTAGAGAAATGGCCGAATCTTGCTTCGCATTACAGTTTTATAGAGATATTTGGTTTCTTTGCTGTCTGACTTTGTACAGTGCGAGTCCTAAAGCGATTCTCGGATTAGAGAGGTCTAGAACCTGTAGAAGCTCTCTCTTCGTCAGAACCTCATCAATGATGCTACGGCTGAATCGATTTCTTGCTGGAGCGCACTGTCAGGTCTCGAGGTATTCAATAGTTCACTTCGTCGCGTTCAGTTTTAGAAAAGTGTTAGAGAAATGGCCGAATCTTGCTTCGCATTACAGTTTTATAGAGATATTTGGTTTCTTTGCTGTCTGAAAGTGTACAGTGTGAGTCCTAAAGCGATTCTCGGATTAGAGAGGTCTAGAACCTGAAGAAGCTCTCTCTTCGTCAGAACCTCATCAATGATGCTACCGGCTGAATCGCTTTCTCGCTGGAGCGCACATGTCAGGTCTCGAGGTATTCAATCGTTCACTTCGTCGCGTTCAGTTTTAGAAAAGTGTTCCAGAATTGGCCGAATCTTGCTTCGCACTACAGTTTTATAGAGCTATTTTCGCTTTGTTTCTTTTGCTGTCTGAATGTGTACAGTGTGAGTCCTAAAGCTATATCTATATTCTTACGTCGTTCGGTGATTGTTTTCACTTAAATCACATCATCGAAAGCGTAGCCCGATGATTCTTAAAGTGATAGAACTCCAGAATAGTGCAAGACCGTGCTATTTTTATCTTCGTTATTTTATATGACTTTAATCTTAGAGACGATAAAATGACGAAAATACCTGATGCGAGCATATTCAAGAGGCTTTAG

mRNA sequence

CTGAATCAGAGGCGGATGATCTCGATTATACGATTCTCGATCTCACAAGCTTTGTGGTCCACGATCTCGACTACATCCGAGTTGCCTTCGAGTTTAACGGAATTGGACCTGACGGAAAATCGACTTTCGAGTTTTGATTCTCGGATTAGAGAGAACCTGAAGCAGCTCTCTCTTAGTCAGAACTTTATCAATGATGCTACGGCTGAATCGCTTTCTCGCTGGTGCGCACTGTCAGGTCTCGAGAACCTGAAGAAGCTCTCTCTTCGTCAGAACCTCATCAATGATGCTACGGCTGAATCGCTTTCTCGCTGGCGCGCACTGTCAGGTCTCGAGGTCGAGAACCTGAAGAAGGTCTCTCTTCGTCAGAACCTCATCAATGATGCTACGGCTGAATCGCTTTCTCGCTGGAGCGCACATGTCAGTGCGAGTCCTAAAGCGATTCTCGGATTAGAGAGGTCTAGAACCTGTAGAAGCTCTCTCTTCGTCAGAACCTCATCAATGATGCTACGGCTGAATCGATTTCTTGCTGGAGCGCACTGTCAGGTCTCGAGAGACGATAAAATGACGAAAATACCTGATGCGAGCATATTCAAGAGGCTTTAG

Coding sequence (CDS)

CTGAATCAGAGGCGGATGATCTCGATTATACGATTCTCGATCTCACAAGCTTTGTGGTCCACGATCTCGACTACATCCGAGTTGCCTTCGAGTTTAACGGAATTGGACCTGACGGAAAATCGACTTTCGAGTTTTGATTCTCGGATTAGAGAGAACCTGAAGCAGCTCTCTCTTAGTCAGAACTTTATCAATGATGCTACGGCTGAATCGCTTTCTCGCTGGTGCGCACTGTCAGGTCTCGAGAACCTGAAGAAGCTCTCTCTTCGTCAGAACCTCATCAATGATGCTACGGCTGAATCGCTTTCTCGCTGGCGCGCACTGTCAGGTCTCGAGGTCGAGAACCTGAAGAAGGTCTCTCTTCGTCAGAACCTCATCAATGATGCTACGGCTGAATCGCTTTCTCGCTGGAGCGCACATGTCAGTGCGAGTCCTAAAGCGATTCTCGGATTAGAGAGGTCTAGAACCTGTAGAAGCTCTCTCTTCGTCAGAACCTCATCAATGATGCTACGGCTGAATCGATTTCTTGCTGGAGCGCACTGTCAGGTCTCGAGAGACGATAAAATGACGAAAATACCTGATGCGAGCATATTCAAGAGGCTTTAG

Protein sequence

LNQRRMISIIRFSISQALWSTISTTSELPSSLTELDLTENRLSSFDSRIRENLKQLSLSQNFINDATAESLSRWCALSGLENLKKLSLRQNLINDATAESLSRWRALSGLEVENLKKVSLRQNLINDATAESLSRWSAHVSASPKAILGLERSRTCRSSLFVRTSSMMLRLNRFLAGAHCQVSRDDKMTKIPDASIFKRL

Homology

[Close]

BLAST of Carg18593 vs. NCBI nr
Match: XP_022154721.1 (protein phosphatase 1 regulatory subunit pprA [Momordica charantia] >XP_022154723.1 protein phosphatase 1 regulatory subunit pprA [Momordica charantia] >XP_022154724.1 protein phosphatase 1 regulatory subunit pprA [Momordica charantia])

HSP 1 Score: 83.2 bits (204), Expect = 2.8e-12
Identity = 50/73 (68.49%), Postives = 54/73 (73.97%), Query Frame = 0


Query: 27  ELPSSLTELDLTENRLSSFDSRIRE--NLKQLSLSQNFINDATAESLSRWCALSGLENLK 86
           ELPSSLTELDLT NRLSS DSRI E  NLK+LS+ QN INDA AESLSRW ALSGLE L 
Sbjct: 43  ELPSSLTELDLTANRLSSLDSRIGELSNLKKLSIRQNLINDAAAESLSRWNALSGLEELV 102

Query: 87  KLSLRQNLINDAT 98
               +   I DA+
Sbjct: 103 LRDNQMTKIPDAS 115

[Close]

BLAST of Carg18593 vs. NCBI nr
Match: XP_023547162.1 (protein phosphatase 1 regulatory inhibitor subunit PPP1R7 homolog [Cucurbita pepo subsp. pepo] >XP_023547163.1 protein phosphatase 1 regulatory inhibitor subunit PPP1R7 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 80.1 bits (196), Expect = 2.4e-11
Identity = 49/73 (67.12%), Postives = 52/73 (71.23%), Query Frame = 0


Query: 27  ELPSSLTELDLTENRLSSFDSRIRE--NLKQLSLSQNFINDATAESLSRWCALSGLENLK 86
           ELPSSL ELDLT NRLSS DSRI E  NLK+LSL QN INDA  ESLSRW ALSGLE L 
Sbjct: 43  ELPSSLMELDLTANRLSSLDSRIGELSNLKKLSLRQNLINDAAVESLSRWNALSGLEELV 102

Query: 87  KLSLRQNLINDAT 98
               +   I DA+
Sbjct: 103 LRDNQMTKIPDAS 115

[Close]

BLAST of Carg18593 vs. NCBI nr
Match: XP_022946403.1 (protein phosphatase 1 regulatory inhibitor subunit PPP1R7 homolog [Cucurbita moschata])

HSP 1 Score: 79.7 bits (195), Expect = 3.1e-11
Identity = 49/73 (67.12%), Postives = 52/73 (71.23%), Query Frame = 0


Query: 27  ELPSSLTELDLTENRLSSFDSRIRE--NLKQLSLSQNFINDATAESLSRWCALSGLENLK 86
           ELPSSL ELDLT NRLSS DSRI E  NLK+LSL QN INDA  ESLSRW ALSGLE L 
Sbjct: 43  ELPSSLMELDLTANRLSSLDSRIGELSNLKKLSLRQNLINDAAVESLSRWNALSGLEELI 102

Query: 87  KLSLRQNLINDAT 98
               +   I DA+
Sbjct: 103 LRDNQMTKIPDAS 115

[Close]

BLAST of Carg18593 vs. NCBI nr
Match: KAG6599471.1 (Protein phosphatase 1 regulatory inhibitor subunit PPP1R7-like protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7030449.1 Protein phosphatase 1 regulatory subunit pprA [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 79.7 bits (195), Expect = 3.1e-11
Identity = 49/73 (67.12%), Postives = 52/73 (71.23%), Query Frame = 0


Query: 27  ELPSSLTELDLTENRLSSFDSRIRE--NLKQLSLSQNFINDATAESLSRWCALSGLENLK 86
           ELPSSL ELDLT NRLSS DSRI E  NLK+LSL QN INDA  ESLSRW ALSGLE L 
Sbjct: 43  ELPSSLMELDLTANRLSSLDSRIGELSNLKKLSLRQNLINDAAVESLSRWNALSGLEELI 102

Query: 87  KLSLRQNLINDAT 98
               +   I DA+
Sbjct: 103 LRDNQMTKIPDAS 115

[Close]

BLAST of Carg18593 vs. NCBI nr
Match: XP_022999515.1 (protein phosphatase 1 regulatory inhibitor subunit PPP1R7 homolog [Cucurbita maxima])

HSP 1 Score: 79.7 bits (195), Expect = 3.1e-11
Identity = 49/73 (67.12%), Postives = 52/73 (71.23%), Query Frame = 0


Query: 27  ELPSSLTELDLTENRLSSFDSRIRE--NLKQLSLSQNFINDATAESLSRWCALSGLENLK 86
           ELPSSL ELDLT NRLSS DSRI E  NLK+LSL QN INDA  ESLSRW ALSGLE L 
Sbjct: 43  ELPSSLMELDLTANRLSSLDSRIGELSNLKKLSLRQNLINDAAVESLSRWNALSGLEELI 102

Query: 87  KLSLRQNLINDAT 98
               +   I DA+
Sbjct: 103 LRDNQMTKIPDAS 115

[Close]

BLAST of Carg18593 vs. ExPASy Swiss-Prot
Match: Q84WJ9 (Protein phosphatase 1 regulatory inhibitor subunit PPP1R7 homolog OS=Arabidopsis thaliana OX=3702 GN=At5g19680 PE=1 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 6.8e-09
Identity = 37/61 (60.66%), Postives = 42/61 (68.85%), Query Frame = 0


Query: 25 TSELPSSLTELDLTENRLSSFDSRIRE--NLKQLSLSQNFINDATAESLSRWCALSGLEN 84
          T ELP +L ELDLT NRLS  DSRI +   LK+LSL QN I+D+  E LS W ALS LE 
Sbjct: 32 TVELPPNLIELDLTANRLSGLDSRIAQLSTLKKLSLRQNLIDDSAVEPLSHWDALSDLEE 91

[Close]

BLAST of Carg18593 vs. ExPASy TrEMBL
Match: A0A6J1DN03 (protein phosphatase 1 regulatory subunit pprA OS=Momordica charantia OX=3673 GN=LOC111021907 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 1.4e-12
Identity = 50/73 (68.49%), Postives = 54/73 (73.97%), Query Frame = 0


Query: 27  ELPSSLTELDLTENRLSSFDSRIRE--NLKQLSLSQNFINDATAESLSRWCALSGLENLK 86
           ELPSSLTELDLT NRLSS DSRI E  NLK+LS+ QN INDA AESLSRW ALSGLE L 
Sbjct: 43  ELPSSLTELDLTANRLSSLDSRIGELSNLKKLSIRQNLINDAAAESLSRWNALSGLEELV 102

Query: 87  KLSLRQNLINDAT 98
               +   I DA+
Sbjct: 103 LRDNQMTKIPDAS 115

[Close]

BLAST of Carg18593 vs. ExPASy TrEMBL
Match: A0A6J1KFL4 (protein phosphatase 1 regulatory inhibitor subunit PPP1R7 homolog OS=Cucurbita maxima OX=3661 GN=LOC111493850 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.5e-11
Identity = 49/73 (67.12%), Postives = 52/73 (71.23%), Query Frame = 0


Query: 27  ELPSSLTELDLTENRLSSFDSRIRE--NLKQLSLSQNFINDATAESLSRWCALSGLENLK 86
           ELPSSL ELDLT NRLSS DSRI E  NLK+LSL QN INDA  ESLSRW ALSGLE L 
Sbjct: 43  ELPSSLMELDLTANRLSSLDSRIGELSNLKKLSLRQNLINDAAVESLSRWNALSGLEELI 102

Query: 87  KLSLRQNLINDAT 98
               +   I DA+
Sbjct: 103 LRDNQMTKIPDAS 115

[Close]

BLAST of Carg18593 vs. ExPASy TrEMBL
Match: A0A6J1G3P9 (protein phosphatase 1 regulatory inhibitor subunit PPP1R7 homolog OS=Cucurbita moschata OX=3662 GN=LOC111450470 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.5e-11
Identity = 49/73 (67.12%), Postives = 52/73 (71.23%), Query Frame = 0


Query: 27  ELPSSLTELDLTENRLSSFDSRIRE--NLKQLSLSQNFINDATAESLSRWCALSGLENLK 86
           ELPSSL ELDLT NRLSS DSRI E  NLK+LSL QN INDA  ESLSRW ALSGLE L 
Sbjct: 43  ELPSSLMELDLTANRLSSLDSRIGELSNLKKLSLRQNLINDAAVESLSRWNALSGLEELI 102

Query: 87  KLSLRQNLINDAT 98
               +   I DA+
Sbjct: 103 LRDNQMTKIPDAS 115

[Close]

BLAST of Carg18593 vs. ExPASy TrEMBL
Match: A0A5D3CKJ2 (Protein phosphatase 1 regulatory subunit pprA OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold332G00500 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 2.2e-10
Identity = 46/73 (63.01%), Postives = 52/73 (71.23%), Query Frame = 0


Query: 27  ELPSSLTELDLTENRLSSFDSRIRE--NLKQLSLSQNFINDATAESLSRWCALSGLENLK 86
           ELPSSLTELDLT NRL++ D RI E  NLK+LSL QN IN+A  ESLSRW ALSGLE L 
Sbjct: 37  ELPSSLTELDLTANRLTNLDPRIGELSNLKKLSLRQNLINNAAVESLSRWNALSGLEELI 96

Query: 87  KLSLRQNLINDAT 98
               +   I DA+
Sbjct: 97  LRDNQMTKIPDAS 109

[Close]

BLAST of Carg18593 vs. ExPASy TrEMBL
Match: A0A5A7V2Q2 (Protein phosphatase 1 regulatory subunit pprA OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold41G00950 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 2.2e-10
Identity = 46/73 (63.01%), Postives = 52/73 (71.23%), Query Frame = 0


Query: 27  ELPSSLTELDLTENRLSSFDSRIRE--NLKQLSLSQNFINDATAESLSRWCALSGLENLK 86
           ELPSSLTELDLT NRL++ D RI E  NLK+LSL QN IN+A  ESLSRW ALSGLE L 
Sbjct: 37  ELPSSLTELDLTANRLTNLDPRIGELSNLKKLSLRQNLINNAAVESLSRWNALSGLEELI 96

Query: 87  KLSLRQNLINDAT 98
               +   I DA+
Sbjct: 97  LRDNQMTKIPDAS 109

[Close]

BLAST of Carg18593 vs. TAIR 10
Match: AT5G19680.1 (Leucine-rich repeat (LRR) family protein )

HSP 1 Score: 62.4 bits (150), Expect = 4.8e-10
Identity = 37/61 (60.66%), Postives = 42/61 (68.85%), Query Frame = 0


Query: 25 TSELPSSLTELDLTENRLSSFDSRIRE--NLKQLSLSQNFINDATAESLSRWCALSGLEN 84
          T ELP +L ELDLT NRLS  DSRI +   LK+LSL QN I+D+  E LS W ALS LE 
Sbjct: 32 TVELPPNLIELDLTANRLSGLDSRIAQLSTLKKLSLRQNLIDDSAVEPLSHWDALSDLEE 91

The following BLAST results are available for this feature:

BLAST of Carg18593 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022154721.1	2.8e-12	68.49	protein phosphatase 1 regulatory subunit pprA [Momordica charantia] >XP_02215472...	[more]
XP_023547162.1	2.4e-11	67.12	protein phosphatase 1 regulatory inhibitor subunit PPP1R7 homolog [Cucurbita pep...	[more]
XP_022946403.1	3.1e-11	67.12	protein phosphatase 1 regulatory inhibitor subunit PPP1R7 homolog [Cucurbita mos...	[more]
KAG6599471.1	3.1e-11	67.12	Protein phosphatase 1 regulatory inhibitor subunit PPP1R7-like protein, partial ...	[more]
XP_022999515.1	3.1e-11	67.12	protein phosphatase 1 regulatory inhibitor subunit PPP1R7 homolog [Cucurbita max...	[more]

BLAST of Carg18593 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84WJ9	6.8e-09	60.66	Protein phosphatase 1 regulatory inhibitor subunit PPP1R7 homolog OS=Arabidopsis...	[more]

BLAST of Carg18593 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DN03	1.4e-12	68.49	protein phosphatase 1 regulatory subunit pprA OS=Momordica charantia OX=3673 GN=...	[more]
A0A6J1KFL4	1.5e-11	67.12	protein phosphatase 1 regulatory inhibitor subunit PPP1R7 homolog OS=Cucurbita m...	[more]
A0A6J1G3P9	1.5e-11	67.12	protein phosphatase 1 regulatory inhibitor subunit PPP1R7 homolog OS=Cucurbita m...	[more]
A0A5D3CKJ2	2.2e-10	63.01	Protein phosphatase 1 regulatory subunit pprA OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7V2Q2	2.2e-10	63.01	Protein phosphatase 1 regulatory subunit pprA OS=Cucumis melo var. makuwa OX=119...	[more]

BLAST of Carg18593 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G19680.1	4.8e-10	60.66	Leucine-rich repeat (LRR) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR032675	Leucine-rich repeat domain superfamily	GENE3D	3.80.10.10	Ribonuclease Inhibitor	coord: 8..156 e-value: 2.4E-14 score: 54.7
None	No IPR available	PANTHER	PTHR18849	LEUCINE RICH REPEAT PROTEIN	coord: 12..83
None	No IPR available	PANTHER	PTHR18849:SF13	BNACNNG14750D PROTEIN	coord: 12..83
None	No IPR available	PANTHER	PTHR18849:SF13	BNACNNG14750D PROTEIN	coord: 80..111
None	No IPR available	PANTHER	PTHR18849	LEUCINE RICH REPEAT PROTEIN	coord: 80..111
None	No IPR available	SUPERFAMILY	52047	RNI-like	coord: 19..137

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18593-RA	Carg18593-RA	mRNA